Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00682

Experiment: Thymidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00681 and MPMX20_00682 are separated by 53 nucleotidesMPMX20_00682 and MPMX20_00683 are separated by 104 nucleotidesMPMX20_00683 and MPMX20_00684 are separated by 46 nucleotides MPMX20_00681: MPMX20_00681 - Thymidine phosphorylase, at 699,485 to 700,807 _00681 MPMX20_00682: MPMX20_00682 - Phosphopentomutase, at 700,861 to 702,084 _00682 MPMX20_00683: MPMX20_00683 - Purine nucleoside phosphorylase DeoD-type, at 702,189 to 702,911 _00683 MPMX20_00684: MPMX20_00684 - Protein GltF, at 702,958 to 703,662 _00684 Position (kb) 700 701 702 703Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 699.870 kb on - strand, within MPMX20_00681at 699.957 kb on + strand, within MPMX20_00681at 700.046 kb on - strand, within MPMX20_00681at 700.075 kb on - strand, within MPMX20_00681at 700.076 kb on - strand, within MPMX20_00681at 700.122 kb on + strand, within MPMX20_00681at 700.130 kb on - strand, within MPMX20_00681at 700.144 kb on + strand, within MPMX20_00681at 700.173 kb on - strand, within MPMX20_00681at 700.193 kb on + strand, within MPMX20_00681at 700.196 kb on - strand, within MPMX20_00681at 700.205 kb on + strand, within MPMX20_00681at 700.242 kb on + strand, within MPMX20_00681at 700.252 kb on + strand, within MPMX20_00681at 700.260 kb on - strand, within MPMX20_00681at 700.267 kb on - strand, within MPMX20_00681at 700.275 kb on - strand, within MPMX20_00681at 700.283 kb on - strand, within MPMX20_00681at 700.309 kb on + strand, within MPMX20_00681at 700.309 kb on + strand, within MPMX20_00681at 700.309 kb on + strand, within MPMX20_00681at 700.319 kb on - strand, within MPMX20_00681at 700.319 kb on - strand, within MPMX20_00681at 700.346 kb on + strand, within MPMX20_00681at 700.399 kb on - strand, within MPMX20_00681at 700.519 kb on - strand, within MPMX20_00681at 700.531 kb on - strand, within MPMX20_00681at 700.537 kb on - strand, within MPMX20_00681at 700.538 kb on - strand, within MPMX20_00681at 700.602 kb on - strand, within MPMX20_00681at 700.619 kb on - strand, within MPMX20_00681at 700.619 kb on - strand, within MPMX20_00681at 700.682 kb on + strandat 700.690 kb on - strandat 700.690 kb on - strandat 700.707 kb on - strandat 700.708 kb on - strandat 700.774 kb on - strandat 700.807 kb on + strandat 700.807 kb on + strandat 700.807 kb on + strandat 700.807 kb on + strandat 700.812 kb on + strandat 700.812 kb on + strandat 700.812 kb on + strandat 700.812 kb on + strandat 700.815 kb on - strandat 700.820 kb on - strandat 700.882 kb on + strandat 700.882 kb on + strandat 700.890 kb on - strandat 700.890 kb on - strandat 700.890 kb on - strandat 700.890 kb on - strandat 700.963 kb on + strandat 700.963 kb on + strandat 700.963 kb on + strandat 700.971 kb on - strandat 701.033 kb on + strand, within MPMX20_00682at 701.053 kb on + strand, within MPMX20_00682at 701.096 kb on + strand, within MPMX20_00682at 701.282 kb on + strand, within MPMX20_00682at 701.317 kb on - strand, within MPMX20_00682at 701.348 kb on - strand, within MPMX20_00682at 701.369 kb on + strand, within MPMX20_00682at 701.377 kb on - strand, within MPMX20_00682at 701.411 kb on + strand, within MPMX20_00682at 701.427 kb on + strand, within MPMX20_00682at 701.430 kb on + strand, within MPMX20_00682at 701.521 kb on + strand, within MPMX20_00682at 701.575 kb on + strand, within MPMX20_00682at 701.575 kb on + strand, within MPMX20_00682at 701.623 kb on - strand, within MPMX20_00682at 701.646 kb on + strand, within MPMX20_00682at 701.646 kb on + strand, within MPMX20_00682at 701.646 kb on + strand, within MPMX20_00682at 701.646 kb on + strand, within MPMX20_00682at 701.646 kb on + strand, within MPMX20_00682at 701.646 kb on + strand, within MPMX20_00682at 701.654 kb on - strand, within MPMX20_00682at 701.690 kb on + strand, within MPMX20_00682at 701.703 kb on + strand, within MPMX20_00682at 701.722 kb on - strand, within MPMX20_00682at 701.754 kb on - strand, within MPMX20_00682at 701.788 kb on - strand, within MPMX20_00682at 701.830 kb on - strand, within MPMX20_00682at 701.846 kb on + strand, within MPMX20_00682at 701.914 kb on - strand, within MPMX20_00682at 701.916 kb on + strand, within MPMX20_00682at 701.917 kb on + strand, within MPMX20_00682at 701.922 kb on + strand, within MPMX20_00682at 701.961 kb on + strand, within MPMX20_00682at 701.977 kb on + strandat 702.049 kb on - strandat 702.061 kb on + strandat 702.069 kb on - strandat 702.073 kb on + strandat 702.078 kb on + strandat 702.078 kb on + strandat 702.078 kb on + strandat 702.081 kb on - strandat 702.086 kb on - strandat 702.088 kb on + strandat 702.088 kb on + strandat 702.096 kb on - strandat 702.126 kb on + strandat 702.198 kb on + strandat 702.198 kb on + strandat 702.198 kb on + strandat 702.203 kb on + strandat 702.206 kb on - strandat 702.211 kb on - strandat 702.242 kb on + strandat 702.377 kb on + strand, within MPMX20_00683at 702.377 kb on + strand, within MPMX20_00683at 702.385 kb on - strand, within MPMX20_00683at 702.414 kb on + strand, within MPMX20_00683at 702.456 kb on + strand, within MPMX20_00683at 702.481 kb on + strand, within MPMX20_00683at 702.489 kb on - strand, within MPMX20_00683at 702.489 kb on - strand, within MPMX20_00683at 702.508 kb on + strand, within MPMX20_00683at 702.527 kb on + strand, within MPMX20_00683at 702.589 kb on - strand, within MPMX20_00683at 702.633 kb on - strand, within MPMX20_00683at 702.633 kb on - strand, within MPMX20_00683at 702.645 kb on + strand, within MPMX20_00683at 702.650 kb on + strand, within MPMX20_00683at 702.655 kb on + strand, within MPMX20_00683at 702.660 kb on + strand, within MPMX20_00683at 702.668 kb on - strand, within MPMX20_00683at 702.673 kb on - strand, within MPMX20_00683at 702.681 kb on - strand, within MPMX20_00683at 702.746 kb on + strand, within MPMX20_00683at 702.914 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (C)
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699,870 - MPMX20_00681 0.29 -0.6
699,957 + MPMX20_00681 0.36 -3.2
700,046 - MPMX20_00681 0.42 -0.6
700,075 - MPMX20_00681 0.45 -3.3
700,076 - MPMX20_00681 0.45 -1.6
700,122 + MPMX20_00681 0.48 -3.4
700,130 - MPMX20_00681 0.49 -2.3
700,144 + MPMX20_00681 0.50 -3.0
700,173 - MPMX20_00681 0.52 -1.0
700,193 + MPMX20_00681 0.54 -4.4
700,196 - MPMX20_00681 0.54 -1.9
700,205 + MPMX20_00681 0.54 -2.2
700,242 + MPMX20_00681 0.57 -2.3
700,252 + MPMX20_00681 0.58 -2.2
700,260 - MPMX20_00681 0.59 -3.9
700,267 - MPMX20_00681 0.59 -2.3
700,275 - MPMX20_00681 0.60 -1.5
700,283 - MPMX20_00681 0.60 -2.7
700,309 + MPMX20_00681 0.62 -2.7
700,309 + MPMX20_00681 0.62 -4.2
700,309 + MPMX20_00681 0.62 -5.5
700,319 - MPMX20_00681 0.63 -2.9
700,319 - MPMX20_00681 0.63 -3.0
700,346 + MPMX20_00681 0.65 +0.4
700,399 - MPMX20_00681 0.69 -4.1
700,519 - MPMX20_00681 0.78 -3.5
700,531 - MPMX20_00681 0.79 -2.0
700,537 - MPMX20_00681 0.80 -1.6
700,538 - MPMX20_00681 0.80 -2.5
700,602 - MPMX20_00681 0.84 -2.9
700,619 - MPMX20_00681 0.86 -4.2
700,619 - MPMX20_00681 0.86 -5.0
700,682 + -4.2
700,690 - -2.2
700,690 - -1.6
700,707 - -3.7
700,708 - -4.2
700,774 - -3.7
700,807 + -1.3
700,807 + -0.2
700,807 + -2.9
700,807 + -0.9
700,812 + -1.5
700,812 + -0.7
700,812 + -1.8
700,812 + +0.4
700,815 - -2.7
700,820 - -4.9
700,882 + +2.0
700,882 + -2.7
700,890 - -2.2
700,890 - -4.5
700,890 - -3.3
700,890 - -1.3
700,963 + -2.3
700,963 + -1.3
700,963 + -1.9
700,971 - -0.0
701,033 + MPMX20_00682 0.14 -1.3
701,053 + MPMX20_00682 0.16 -3.1
701,096 + MPMX20_00682 0.19 -2.4
701,282 + MPMX20_00682 0.34 -1.0
701,317 - MPMX20_00682 0.37 -4.1
701,348 - MPMX20_00682 0.40 -0.6
701,369 + MPMX20_00682 0.42 -1.2
701,377 - MPMX20_00682 0.42 -2.7
701,411 + MPMX20_00682 0.45 -2.2
701,427 + MPMX20_00682 0.46 -3.0
701,430 + MPMX20_00682 0.46 -2.5
701,521 + MPMX20_00682 0.54 -2.5
701,575 + MPMX20_00682 0.58 -0.3
701,575 + MPMX20_00682 0.58 -1.0
701,623 - MPMX20_00682 0.62 -3.9
701,646 + MPMX20_00682 0.64 -1.3
701,646 + MPMX20_00682 0.64 -2.8
701,646 + MPMX20_00682 0.64 -1.7
701,646 + MPMX20_00682 0.64 -2.2
701,646 + MPMX20_00682 0.64 -4.2
701,646 + MPMX20_00682 0.64 -2.9
701,654 - MPMX20_00682 0.65 -3.9
701,690 + MPMX20_00682 0.68 -4.0
701,703 + MPMX20_00682 0.69 -2.9
701,722 - MPMX20_00682 0.70 -3.4
701,754 - MPMX20_00682 0.73 -2.9
701,788 - MPMX20_00682 0.76 -3.1
701,830 - MPMX20_00682 0.79 -2.9
701,846 + MPMX20_00682 0.80 -3.6
701,914 - MPMX20_00682 0.86 -1.0
701,916 + MPMX20_00682 0.86 -3.5
701,917 + MPMX20_00682 0.86 -3.7
701,922 + MPMX20_00682 0.87 -2.4
701,961 + MPMX20_00682 0.90 -0.0
701,977 + -2.7
702,049 - -3.7
702,061 + -3.8
702,069 - -2.5
702,073 + -1.8
702,078 + -1.1
702,078 + -0.9
702,078 + +0.2
702,081 - -0.6
702,086 - -0.5
702,088 + -0.8
702,088 + +0.4
702,096 - -0.4
702,126 + -0.0
702,198 + +0.2
702,198 + -0.4
702,198 + +1.4
702,203 + -0.6
702,206 - +0.3
702,211 - -1.8
702,242 + +0.7
702,377 + MPMX20_00683 0.26 +0.5
702,377 + MPMX20_00683 0.26 -0.1
702,385 - MPMX20_00683 0.27 -1.3
702,414 + MPMX20_00683 0.31 +0.2
702,456 + MPMX20_00683 0.37 -0.4
702,481 + MPMX20_00683 0.40 +0.1
702,489 - MPMX20_00683 0.41 +0.0
702,489 - MPMX20_00683 0.41 -0.4
702,508 + MPMX20_00683 0.44 +1.3
702,527 + MPMX20_00683 0.47 -0.1
702,589 - MPMX20_00683 0.55 +0.4
702,633 - MPMX20_00683 0.61 -1.2
702,633 - MPMX20_00683 0.61 -0.1
702,645 + MPMX20_00683 0.63 +1.2
702,650 + MPMX20_00683 0.64 -1.3
702,655 + MPMX20_00683 0.64 -0.4
702,660 + MPMX20_00683 0.65 -0.3
702,668 - MPMX20_00683 0.66 -0.1
702,673 - MPMX20_00683 0.67 +1.3
702,681 - MPMX20_00683 0.68 -1.3
702,746 + MPMX20_00683 0.77 +0.2
702,914 - -0.2

Or see this region's nucleotide sequence