Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00680

Experiment: Thymidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00679 and MPMX20_00680 are separated by 261 nucleotidesMPMX20_00680 and MPMX20_00681 are separated by 56 nucleotides MPMX20_00679: MPMX20_00679 - putative protein YjjI, at 696,840 to 698,387 _00679 MPMX20_00680: MPMX20_00680 - Deoxyribose-phosphate aldolase, at 698,649 to 699,428 _00680 MPMX20_00681: MPMX20_00681 - Thymidine phosphorylase, at 699,485 to 700,807 _00681 Position (kb) 698 699 700Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 697.778 kb on + strand, within MPMX20_00679at 697.778 kb on + strand, within MPMX20_00679at 697.785 kb on - strand, within MPMX20_00679at 697.785 kb on - strand, within MPMX20_00679at 697.788 kb on - strand, within MPMX20_00679at 697.886 kb on - strand, within MPMX20_00679at 698.079 kb on + strand, within MPMX20_00679at 698.123 kb on + strand, within MPMX20_00679at 698.131 kb on - strand, within MPMX20_00679at 698.248 kb on + strandat 698.248 kb on + strandat 698.256 kb on - strandat 698.256 kb on - strandat 698.256 kb on - strandat 698.256 kb on - strandat 698.256 kb on - strandat 698.256 kb on - strandat 698.263 kb on + strandat 698.271 kb on - strandat 698.324 kb on + strandat 698.327 kb on - strandat 698.327 kb on - strandat 698.371 kb on + strandat 698.380 kb on - strandat 698.404 kb on - strandat 698.463 kb on - strandat 698.483 kb on - strandat 698.483 kb on - strandat 698.517 kb on + strandat 698.572 kb on + strandat 698.688 kb on - strandat 698.688 kb on - strandat 698.694 kb on + strandat 698.697 kb on - strandat 698.702 kb on - strandat 698.776 kb on + strand, within MPMX20_00680at 698.782 kb on - strand, within MPMX20_00680at 698.784 kb on - strand, within MPMX20_00680at 698.792 kb on - strand, within MPMX20_00680at 698.918 kb on - strand, within MPMX20_00680at 698.963 kb on + strand, within MPMX20_00680at 698.963 kb on + strand, within MPMX20_00680at 698.994 kb on - strand, within MPMX20_00680at 699.037 kb on - strand, within MPMX20_00680at 699.100 kb on + strand, within MPMX20_00680at 699.108 kb on - strand, within MPMX20_00680at 699.251 kb on - strand, within MPMX20_00680at 699.352 kb on - strandat 699.354 kb on + strandat 699.380 kb on + strandat 699.400 kb on - strandat 699.608 kb on - strandat 699.689 kb on + strand, within MPMX20_00681at 699.697 kb on - strand, within MPMX20_00681at 699.699 kb on + strand, within MPMX20_00681at 699.712 kb on + strand, within MPMX20_00681at 699.720 kb on - strand, within MPMX20_00681at 699.780 kb on + strand, within MPMX20_00681at 699.788 kb on - strand, within MPMX20_00681at 699.793 kb on + strand, within MPMX20_00681at 699.793 kb on + strand, within MPMX20_00681at 699.870 kb on - strand, within MPMX20_00681at 699.957 kb on + strand, within MPMX20_00681at 700.046 kb on - strand, within MPMX20_00681at 700.075 kb on - strand, within MPMX20_00681at 700.076 kb on - strand, within MPMX20_00681at 700.122 kb on + strand, within MPMX20_00681at 700.130 kb on - strand, within MPMX20_00681at 700.144 kb on + strand, within MPMX20_00681at 700.173 kb on - strand, within MPMX20_00681at 700.193 kb on + strand, within MPMX20_00681at 700.196 kb on - strand, within MPMX20_00681at 700.205 kb on + strand, within MPMX20_00681at 700.242 kb on + strand, within MPMX20_00681at 700.252 kb on + strand, within MPMX20_00681at 700.260 kb on - strand, within MPMX20_00681at 700.267 kb on - strand, within MPMX20_00681at 700.275 kb on - strand, within MPMX20_00681at 700.283 kb on - strand, within MPMX20_00681at 700.309 kb on + strand, within MPMX20_00681at 700.309 kb on + strand, within MPMX20_00681at 700.309 kb on + strand, within MPMX20_00681at 700.319 kb on - strand, within MPMX20_00681at 700.319 kb on - strand, within MPMX20_00681at 700.346 kb on + strand, within MPMX20_00681at 700.399 kb on - strand, within MPMX20_00681

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (C)
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697,778 + MPMX20_00679 0.61 +0.8
697,778 + MPMX20_00679 0.61 +0.3
697,785 - MPMX20_00679 0.61 -0.2
697,785 - MPMX20_00679 0.61 -1.2
697,788 - MPMX20_00679 0.61 -0.9
697,886 - MPMX20_00679 0.68 -0.7
698,079 + MPMX20_00679 0.80 +0.2
698,123 + MPMX20_00679 0.83 +0.1
698,131 - MPMX20_00679 0.83 -1.7
698,248 + +0.6
698,248 + -0.6
698,256 - -0.3
698,256 - -2.4
698,256 - -1.9
698,256 - -2.7
698,256 - -2.1
698,256 - -3.1
698,263 + -2.6
698,271 - -2.7
698,324 + +0.2
698,327 - -3.7
698,327 - -2.9
698,371 + +0.1
698,380 - -3.0
698,404 - -1.9
698,463 - -2.7
698,483 - -3.2
698,483 - -1.9
698,517 + +1.1
698,572 + -1.3
698,688 - -3.0
698,688 - -0.3
698,694 + -3.3
698,697 - -1.0
698,702 - -3.2
698,776 + MPMX20_00680 0.16 -2.3
698,782 - MPMX20_00680 0.17 -1.0
698,784 - MPMX20_00680 0.17 -4.5
698,792 - MPMX20_00680 0.18 -3.1
698,918 - MPMX20_00680 0.34 -4.1
698,963 + MPMX20_00680 0.40 -2.9
698,963 + MPMX20_00680 0.40 -1.0
698,994 - MPMX20_00680 0.44 -3.3
699,037 - MPMX20_00680 0.50 -2.4
699,100 + MPMX20_00680 0.58 -3.4
699,108 - MPMX20_00680 0.59 -4.1
699,251 - MPMX20_00680 0.77 -3.0
699,352 - -1.0
699,354 + -2.4
699,380 + -2.3
699,400 - -3.9
699,608 - -2.6
699,689 + MPMX20_00681 0.15 -2.6
699,697 - MPMX20_00681 0.16 -3.6
699,699 + MPMX20_00681 0.16 -1.6
699,712 + MPMX20_00681 0.17 -3.3
699,720 - MPMX20_00681 0.18 -2.8
699,780 + MPMX20_00681 0.22 -5.2
699,788 - MPMX20_00681 0.23 -1.7
699,793 + MPMX20_00681 0.23 -2.5
699,793 + MPMX20_00681 0.23 -3.4
699,870 - MPMX20_00681 0.29 -0.6
699,957 + MPMX20_00681 0.36 -3.2
700,046 - MPMX20_00681 0.42 -0.6
700,075 - MPMX20_00681 0.45 -3.3
700,076 - MPMX20_00681 0.45 -1.6
700,122 + MPMX20_00681 0.48 -3.4
700,130 - MPMX20_00681 0.49 -2.3
700,144 + MPMX20_00681 0.50 -3.0
700,173 - MPMX20_00681 0.52 -1.0
700,193 + MPMX20_00681 0.54 -4.4
700,196 - MPMX20_00681 0.54 -1.9
700,205 + MPMX20_00681 0.54 -2.2
700,242 + MPMX20_00681 0.57 -2.3
700,252 + MPMX20_00681 0.58 -2.2
700,260 - MPMX20_00681 0.59 -3.9
700,267 - MPMX20_00681 0.59 -2.3
700,275 - MPMX20_00681 0.60 -1.5
700,283 - MPMX20_00681 0.60 -2.7
700,309 + MPMX20_00681 0.62 -2.7
700,309 + MPMX20_00681 0.62 -4.2
700,309 + MPMX20_00681 0.62 -5.5
700,319 - MPMX20_00681 0.63 -2.9
700,319 - MPMX20_00681 0.63 -3.0
700,346 + MPMX20_00681 0.65 +0.4
700,399 - MPMX20_00681 0.69 -4.1

Or see this region's nucleotide sequence