Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03113 and MPMX20_03114 overlap by 4 nucleotides MPMX20_03114 and MPMX20_03115 are separated by 129 nucleotides MPMX20_03115 and MPMX20_03116 are separated by 127 nucleotides MPMX20_03116 and MPMX20_03117 are separated by 121 nucleotides
MPMX20_03113: MPMX20_03113 - hypothetical protein, at 3,269,461 to 3,269,859
_03113
MPMX20_03114: MPMX20_03114 - Inner membrane protein YohK, at 3,269,856 to 3,270,551
_03114
MPMX20_03115: MPMX20_03115 - Cytidine deaminase, at 3,270,681 to 3,271,565
_03115
MPMX20_03116: MPMX20_03116 - hypothetical protein, at 3,271,693 to 3,272,412
_03116
MPMX20_03117: MPMX20_03117 - Gamma-glutamylputrescine synthetase PuuA, at 3,272,534 to 3,273,922
_03117
Position (kb)
3270
3271
3272 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3269.696 kb on + strand, within MPMX20_03113 at 3269.704 kb on - strand, within MPMX20_03113 at 3269.704 kb on - strand, within MPMX20_03113 at 3269.766 kb on - strand, within MPMX20_03113 at 3269.900 kb on + strand at 3269.908 kb on - strand at 3269.908 kb on - strand at 3269.978 kb on - strand, within MPMX20_03114 at 3270.077 kb on - strand, within MPMX20_03114 at 3270.188 kb on + strand, within MPMX20_03114 at 3270.188 kb on + strand, within MPMX20_03114 at 3270.191 kb on - strand, within MPMX20_03114 at 3270.196 kb on - strand, within MPMX20_03114 at 3270.235 kb on - strand, within MPMX20_03114 at 3270.283 kb on - strand, within MPMX20_03114 at 3270.379 kb on - strand, within MPMX20_03114 at 3270.414 kb on + strand, within MPMX20_03114 at 3270.414 kb on + strand, within MPMX20_03114 at 3270.422 kb on - strand, within MPMX20_03114 at 3270.422 kb on - strand, within MPMX20_03114 at 3270.438 kb on + strand, within MPMX20_03114 at 3270.648 kb on - strand at 3270.655 kb on + strand at 3270.740 kb on + strand at 3270.784 kb on - strand, within MPMX20_03115 at 3270.784 kb on - strand, within MPMX20_03115 at 3270.789 kb on - strand, within MPMX20_03115 at 3270.816 kb on + strand, within MPMX20_03115 at 3270.816 kb on + strand, within MPMX20_03115 at 3270.816 kb on + strand, within MPMX20_03115 at 3270.856 kb on - strand, within MPMX20_03115 at 3270.933 kb on - strand, within MPMX20_03115 at 3270.967 kb on + strand, within MPMX20_03115 at 3270.998 kb on - strand, within MPMX20_03115 at 3271.013 kb on - strand, within MPMX20_03115 at 3271.075 kb on + strand, within MPMX20_03115 at 3271.100 kb on - strand, within MPMX20_03115 at 3271.148 kb on - strand, within MPMX20_03115 at 3271.281 kb on - strand, within MPMX20_03115 at 3271.283 kb on + strand, within MPMX20_03115 at 3271.301 kb on - strand, within MPMX20_03115 at 3271.330 kb on + strand, within MPMX20_03115 at 3271.370 kb on - strand, within MPMX20_03115 at 3271.398 kb on + strand, within MPMX20_03115 at 3271.406 kb on - strand, within MPMX20_03115 at 3271.431 kb on + strand, within MPMX20_03115 at 3271.431 kb on - strand, within MPMX20_03115 at 3271.439 kb on - strand, within MPMX20_03115 at 3271.637 kb on + strand at 3271.637 kb on + strand at 3271.645 kb on - strand at 3271.797 kb on - strand, within MPMX20_03116 at 3271.815 kb on - strand, within MPMX20_03116 at 3271.835 kb on + strand, within MPMX20_03116 at 3271.838 kb on - strand, within MPMX20_03116 at 3271.840 kb on + strand, within MPMX20_03116 at 3271.842 kb on + strand, within MPMX20_03116 at 3271.843 kb on - strand, within MPMX20_03116 at 3271.848 kb on - strand, within MPMX20_03116 at 3271.848 kb on - strand, within MPMX20_03116 at 3271.873 kb on - strand, within MPMX20_03116 at 3271.884 kb on + strand, within MPMX20_03116 at 3271.884 kb on + strand, within MPMX20_03116 at 3271.892 kb on - strand, within MPMX20_03116 at 3271.892 kb on - strand, within MPMX20_03116 at 3271.918 kb on + strand, within MPMX20_03116 at 3271.984 kb on - strand, within MPMX20_03116 at 3272.005 kb on + strand, within MPMX20_03116 at 3272.046 kb on + strand, within MPMX20_03116 at 3272.166 kb on + strand, within MPMX20_03116 at 3272.166 kb on + strand, within MPMX20_03116 at 3272.166 kb on + strand, within MPMX20_03116 at 3272.166 kb on + strand, within MPMX20_03116 at 3272.166 kb on + strand, within MPMX20_03116 at 3272.174 kb on - strand, within MPMX20_03116 at 3272.174 kb on - strand, within MPMX20_03116 at 3272.174 kb on - strand, within MPMX20_03116 at 3272.174 kb on - strand, within MPMX20_03116 at 3272.174 kb on - strand, within MPMX20_03116 at 3272.174 kb on - strand, within MPMX20_03116 at 3272.187 kb on + strand, within MPMX20_03116 at 3272.187 kb on + strand, within MPMX20_03116 at 3272.187 kb on + strand, within MPMX20_03116 at 3272.187 kb on + strand, within MPMX20_03116 at 3272.187 kb on + strand, within MPMX20_03116 at 3272.187 kb on + strand, within MPMX20_03116 at 3272.187 kb on + strand, within MPMX20_03116 at 3272.187 kb on + strand, within MPMX20_03116 at 3272.187 kb on + strand, within MPMX20_03116 at 3272.187 kb on + strand, within MPMX20_03116 at 3272.187 kb on + strand, within MPMX20_03116 at 3272.187 kb on + strand, within MPMX20_03116 at 3272.187 kb on + strand, within MPMX20_03116 at 3272.187 kb on + strand, within MPMX20_03116 at 3272.187 kb on + strand, within MPMX20_03116 at 3272.194 kb on + strand, within MPMX20_03116 at 3272.195 kb on - strand, within MPMX20_03116 at 3272.195 kb on - strand, within MPMX20_03116 at 3272.195 kb on - strand, within MPMX20_03116 at 3272.195 kb on - strand, within MPMX20_03116 at 3272.195 kb on - strand, within MPMX20_03116 at 3272.195 kb on - strand, within MPMX20_03116 at 3272.195 kb on - strand, within MPMX20_03116 at 3272.195 kb on - strand, within MPMX20_03116 at 3272.195 kb on - strand, within MPMX20_03116 at 3272.195 kb on - strand, within MPMX20_03116 at 3272.195 kb on - strand, within MPMX20_03116 at 3272.195 kb on - strand, within MPMX20_03116 at 3272.271 kb on + strand, within MPMX20_03116 at 3272.355 kb on - strand at 3272.355 kb on - strand at 3272.360 kb on - strand at 3272.360 kb on - strand at 3272.369 kb on + strand at 3272.369 kb on + strand at 3272.369 kb on + strand at 3272.418 kb on + strand at 3272.418 kb on + strand at 3272.426 kb on - strand at 3272.469 kb on - strand at 3272.469 kb on - strand at 3272.469 kb on - strand at 3272.487 kb on + strand at 3272.496 kb on + strand at 3272.516 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 3,269,696 + MPMX20_03113 0.59 -0.6 3,269,704 - MPMX20_03113 0.61 +2.5 3,269,704 - MPMX20_03113 0.61 -1.6 3,269,766 - MPMX20_03113 0.76 +1.1 3,269,900 + +0.2 3,269,908 - -0.6 3,269,908 - -0.3 3,269,978 - MPMX20_03114 0.18 -0.5 3,270,077 - MPMX20_03114 0.32 -2.2 3,270,188 + MPMX20_03114 0.48 +0.6 3,270,188 + MPMX20_03114 0.48 -0.3 3,270,191 - MPMX20_03114 0.48 +0.2 3,270,196 - MPMX20_03114 0.49 +1.2 3,270,235 - MPMX20_03114 0.54 -0.6 3,270,283 - MPMX20_03114 0.61 +0.2 3,270,379 - MPMX20_03114 0.75 +0.2 3,270,414 + MPMX20_03114 0.80 -1.2 3,270,414 + MPMX20_03114 0.80 -1.3 3,270,422 - MPMX20_03114 0.81 +0.7 3,270,422 - MPMX20_03114 0.81 -0.6 3,270,438 + MPMX20_03114 0.84 -0.6 3,270,648 - +0.1 3,270,655 + +0.3 3,270,740 + +2.3 3,270,784 - MPMX20_03115 0.12 +2.0 3,270,784 - MPMX20_03115 0.12 +2.4 3,270,789 - MPMX20_03115 0.12 +2.5 3,270,816 + MPMX20_03115 0.15 +1.9 3,270,816 + MPMX20_03115 0.15 +1.9 3,270,816 + MPMX20_03115 0.15 +1.4 3,270,856 - MPMX20_03115 0.20 +1.8 3,270,933 - MPMX20_03115 0.28 +2.3 3,270,967 + MPMX20_03115 0.32 +2.3 3,270,998 - MPMX20_03115 0.36 +1.8 3,271,013 - MPMX20_03115 0.38 +1.7 3,271,075 + MPMX20_03115 0.45 +2.2 3,271,100 - MPMX20_03115 0.47 +2.6 3,271,148 - MPMX20_03115 0.53 +2.2 3,271,281 - MPMX20_03115 0.68 +2.7 3,271,283 + MPMX20_03115 0.68 +2.8 3,271,301 - MPMX20_03115 0.70 +2.7 3,271,330 + MPMX20_03115 0.73 +2.4 3,271,370 - MPMX20_03115 0.78 +1.9 3,271,398 + MPMX20_03115 0.81 +2.3 3,271,406 - MPMX20_03115 0.82 +2.7 3,271,431 + MPMX20_03115 0.85 +2.4 3,271,431 - MPMX20_03115 0.85 +0.8 3,271,439 - MPMX20_03115 0.86 +3.1 3,271,637 + -1.3 3,271,637 + +0.1 3,271,645 - -0.6 3,271,797 - MPMX20_03116 0.14 -0.3 3,271,815 - MPMX20_03116 0.17 -0.3 3,271,835 + MPMX20_03116 0.20 -1.6 3,271,838 - MPMX20_03116 0.20 -0.4 3,271,840 + MPMX20_03116 0.20 +0.1 3,271,842 + MPMX20_03116 0.21 -0.6 3,271,843 - MPMX20_03116 0.21 -2.5 3,271,848 - MPMX20_03116 0.22 -0.2 3,271,848 - MPMX20_03116 0.22 -0.6 3,271,873 - MPMX20_03116 0.25 -2.0 3,271,884 + MPMX20_03116 0.27 -2.2 3,271,884 + MPMX20_03116 0.27 -0.4 3,271,892 - MPMX20_03116 0.28 +1.4 3,271,892 - MPMX20_03116 0.28 -0.3 3,271,918 + MPMX20_03116 0.31 -0.3 3,271,984 - MPMX20_03116 0.40 -0.2 3,272,005 + MPMX20_03116 0.43 -1.9 3,272,046 + MPMX20_03116 0.49 +0.8 3,272,166 + MPMX20_03116 0.66 +0.5 3,272,166 + MPMX20_03116 0.66 -1.7 3,272,166 + MPMX20_03116 0.66 -0.3 3,272,166 + MPMX20_03116 0.66 -2.0 3,272,166 + MPMX20_03116 0.66 -0.4 3,272,174 - MPMX20_03116 0.67 -1.1 3,272,174 - MPMX20_03116 0.67 -1.7 3,272,174 - MPMX20_03116 0.67 +0.5 3,272,174 - MPMX20_03116 0.67 -0.7 3,272,174 - MPMX20_03116 0.67 -1.0 3,272,174 - MPMX20_03116 0.67 -2.2 3,272,187 + MPMX20_03116 0.69 -1.0 3,272,187 + MPMX20_03116 0.69 +1.5 3,272,187 + MPMX20_03116 0.69 -1.4 3,272,187 + MPMX20_03116 0.69 -1.9 3,272,187 + MPMX20_03116 0.69 -1.8 3,272,187 + MPMX20_03116 0.69 +1.6 3,272,187 + MPMX20_03116 0.69 +0.7 3,272,187 + MPMX20_03116 0.69 +1.9 3,272,187 + MPMX20_03116 0.69 -2.3 3,272,187 + MPMX20_03116 0.69 -1.1 3,272,187 + MPMX20_03116 0.69 -1.2 3,272,187 + MPMX20_03116 0.69 +0.2 3,272,187 + MPMX20_03116 0.69 -0.3 3,272,187 + MPMX20_03116 0.69 -0.9 3,272,187 + MPMX20_03116 0.69 -2.1 3,272,194 + MPMX20_03116 0.70 -1.0 3,272,195 - MPMX20_03116 0.70 -0.9 3,272,195 - MPMX20_03116 0.70 -0.7 3,272,195 - MPMX20_03116 0.70 -1.1 3,272,195 - MPMX20_03116 0.70 -0.2 3,272,195 - MPMX20_03116 0.70 -1.2 3,272,195 - MPMX20_03116 0.70 -0.2 3,272,195 - MPMX20_03116 0.70 -2.8 3,272,195 - MPMX20_03116 0.70 -2.4 3,272,195 - MPMX20_03116 0.70 +0.2 3,272,195 - MPMX20_03116 0.70 -1.2 3,272,195 - MPMX20_03116 0.70 -0.4 3,272,195 - MPMX20_03116 0.70 +0.5 3,272,271 + MPMX20_03116 0.80 -0.4 3,272,355 - -0.0 3,272,355 - -1.3 3,272,360 - -2.5 3,272,360 - +1.2 3,272,369 + +2.0 3,272,369 + -1.5 3,272,369 + -0.1 3,272,418 + +0.5 3,272,418 + +0.3 3,272,426 - +0.8 3,272,469 - -1.1 3,272,469 - +0.2 3,272,469 - +0.1 3,272,487 + +1.3 3,272,496 + -1.4 3,272,516 - +0.2
Or see this region's nucleotide sequence