Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03115

Experiment: Uridine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03113 and MPMX20_03114 overlap by 4 nucleotidesMPMX20_03114 and MPMX20_03115 are separated by 129 nucleotidesMPMX20_03115 and MPMX20_03116 are separated by 127 nucleotidesMPMX20_03116 and MPMX20_03117 are separated by 121 nucleotides MPMX20_03113: MPMX20_03113 - hypothetical protein, at 3,269,461 to 3,269,859 _03113 MPMX20_03114: MPMX20_03114 - Inner membrane protein YohK, at 3,269,856 to 3,270,551 _03114 MPMX20_03115: MPMX20_03115 - Cytidine deaminase, at 3,270,681 to 3,271,565 _03115 MPMX20_03116: MPMX20_03116 - hypothetical protein, at 3,271,693 to 3,272,412 _03116 MPMX20_03117: MPMX20_03117 - Gamma-glutamylputrescine synthetase PuuA, at 3,272,534 to 3,273,922 _03117 Position (kb) 3270 3271 3272Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3269.696 kb on + strand, within MPMX20_03113at 3269.704 kb on - strand, within MPMX20_03113at 3269.704 kb on - strand, within MPMX20_03113at 3269.766 kb on - strand, within MPMX20_03113at 3269.900 kb on + strandat 3269.908 kb on - strandat 3269.908 kb on - strandat 3269.978 kb on - strand, within MPMX20_03114at 3270.077 kb on - strand, within MPMX20_03114at 3270.188 kb on + strand, within MPMX20_03114at 3270.188 kb on + strand, within MPMX20_03114at 3270.191 kb on - strand, within MPMX20_03114at 3270.196 kb on - strand, within MPMX20_03114at 3270.235 kb on - strand, within MPMX20_03114at 3270.283 kb on - strand, within MPMX20_03114at 3270.379 kb on - strand, within MPMX20_03114at 3270.414 kb on + strand, within MPMX20_03114at 3270.414 kb on + strand, within MPMX20_03114at 3270.422 kb on - strand, within MPMX20_03114at 3270.422 kb on - strand, within MPMX20_03114at 3270.438 kb on + strand, within MPMX20_03114at 3270.648 kb on - strandat 3270.655 kb on + strandat 3270.740 kb on + strandat 3270.784 kb on - strand, within MPMX20_03115at 3270.784 kb on - strand, within MPMX20_03115at 3270.789 kb on - strand, within MPMX20_03115at 3270.816 kb on + strand, within MPMX20_03115at 3270.816 kb on + strand, within MPMX20_03115at 3270.816 kb on + strand, within MPMX20_03115at 3270.856 kb on - strand, within MPMX20_03115at 3270.933 kb on - strand, within MPMX20_03115at 3270.967 kb on + strand, within MPMX20_03115at 3270.998 kb on - strand, within MPMX20_03115at 3271.013 kb on - strand, within MPMX20_03115at 3271.075 kb on + strand, within MPMX20_03115at 3271.100 kb on - strand, within MPMX20_03115at 3271.148 kb on - strand, within MPMX20_03115at 3271.281 kb on - strand, within MPMX20_03115at 3271.283 kb on + strand, within MPMX20_03115at 3271.301 kb on - strand, within MPMX20_03115at 3271.330 kb on + strand, within MPMX20_03115at 3271.370 kb on - strand, within MPMX20_03115at 3271.398 kb on + strand, within MPMX20_03115at 3271.406 kb on - strand, within MPMX20_03115at 3271.431 kb on + strand, within MPMX20_03115at 3271.431 kb on - strand, within MPMX20_03115at 3271.439 kb on - strand, within MPMX20_03115at 3271.637 kb on + strandat 3271.637 kb on + strandat 3271.645 kb on - strandat 3271.797 kb on - strand, within MPMX20_03116at 3271.815 kb on - strand, within MPMX20_03116at 3271.835 kb on + strand, within MPMX20_03116at 3271.838 kb on - strand, within MPMX20_03116at 3271.840 kb on + strand, within MPMX20_03116at 3271.842 kb on + strand, within MPMX20_03116at 3271.843 kb on - strand, within MPMX20_03116at 3271.848 kb on - strand, within MPMX20_03116at 3271.848 kb on - strand, within MPMX20_03116at 3271.873 kb on - strand, within MPMX20_03116at 3271.884 kb on + strand, within MPMX20_03116at 3271.884 kb on + strand, within MPMX20_03116at 3271.892 kb on - strand, within MPMX20_03116at 3271.892 kb on - strand, within MPMX20_03116at 3271.918 kb on + strand, within MPMX20_03116at 3271.984 kb on - strand, within MPMX20_03116at 3272.005 kb on + strand, within MPMX20_03116at 3272.046 kb on + strand, within MPMX20_03116at 3272.166 kb on + strand, within MPMX20_03116at 3272.166 kb on + strand, within MPMX20_03116at 3272.166 kb on + strand, within MPMX20_03116at 3272.166 kb on + strand, within MPMX20_03116at 3272.166 kb on + strand, within MPMX20_03116at 3272.174 kb on - strand, within MPMX20_03116at 3272.174 kb on - strand, within MPMX20_03116at 3272.174 kb on - strand, within MPMX20_03116at 3272.174 kb on - strand, within MPMX20_03116at 3272.174 kb on - strand, within MPMX20_03116at 3272.174 kb on - strand, within MPMX20_03116at 3272.187 kb on + strand, within MPMX20_03116at 3272.187 kb on + strand, within MPMX20_03116at 3272.187 kb on + strand, within MPMX20_03116at 3272.187 kb on + strand, within MPMX20_03116at 3272.187 kb on + strand, within MPMX20_03116at 3272.187 kb on + strand, within MPMX20_03116at 3272.187 kb on + strand, within MPMX20_03116at 3272.187 kb on + strand, within MPMX20_03116at 3272.187 kb on + strand, within MPMX20_03116at 3272.187 kb on + strand, within MPMX20_03116at 3272.187 kb on + strand, within MPMX20_03116at 3272.187 kb on + strand, within MPMX20_03116at 3272.187 kb on + strand, within MPMX20_03116at 3272.187 kb on + strand, within MPMX20_03116at 3272.187 kb on + strand, within MPMX20_03116at 3272.194 kb on + strand, within MPMX20_03116at 3272.195 kb on - strand, within MPMX20_03116at 3272.195 kb on - strand, within MPMX20_03116at 3272.195 kb on - strand, within MPMX20_03116at 3272.195 kb on - strand, within MPMX20_03116at 3272.195 kb on - strand, within MPMX20_03116at 3272.195 kb on - strand, within MPMX20_03116at 3272.195 kb on - strand, within MPMX20_03116at 3272.195 kb on - strand, within MPMX20_03116at 3272.195 kb on - strand, within MPMX20_03116at 3272.195 kb on - strand, within MPMX20_03116at 3272.195 kb on - strand, within MPMX20_03116at 3272.195 kb on - strand, within MPMX20_03116at 3272.271 kb on + strand, within MPMX20_03116at 3272.355 kb on - strandat 3272.355 kb on - strandat 3272.360 kb on - strandat 3272.360 kb on - strandat 3272.369 kb on + strandat 3272.369 kb on + strandat 3272.369 kb on + strandat 3272.418 kb on + strandat 3272.418 kb on + strandat 3272.426 kb on - strandat 3272.469 kb on - strandat 3272.469 kb on - strandat 3272.469 kb on - strandat 3272.487 kb on + strandat 3272.496 kb on + strandat 3272.516 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (C)
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3,269,696 + MPMX20_03113 0.59 -0.6
3,269,704 - MPMX20_03113 0.61 +2.5
3,269,704 - MPMX20_03113 0.61 -1.6
3,269,766 - MPMX20_03113 0.76 +1.1
3,269,900 + +0.2
3,269,908 - -0.6
3,269,908 - -0.3
3,269,978 - MPMX20_03114 0.18 -0.5
3,270,077 - MPMX20_03114 0.32 -2.2
3,270,188 + MPMX20_03114 0.48 +0.6
3,270,188 + MPMX20_03114 0.48 -0.3
3,270,191 - MPMX20_03114 0.48 +0.2
3,270,196 - MPMX20_03114 0.49 +1.2
3,270,235 - MPMX20_03114 0.54 -0.6
3,270,283 - MPMX20_03114 0.61 +0.2
3,270,379 - MPMX20_03114 0.75 +0.2
3,270,414 + MPMX20_03114 0.80 -1.2
3,270,414 + MPMX20_03114 0.80 -1.3
3,270,422 - MPMX20_03114 0.81 +0.7
3,270,422 - MPMX20_03114 0.81 -0.6
3,270,438 + MPMX20_03114 0.84 -0.6
3,270,648 - +0.1
3,270,655 + +0.3
3,270,740 + +2.3
3,270,784 - MPMX20_03115 0.12 +2.0
3,270,784 - MPMX20_03115 0.12 +2.4
3,270,789 - MPMX20_03115 0.12 +2.5
3,270,816 + MPMX20_03115 0.15 +1.9
3,270,816 + MPMX20_03115 0.15 +1.9
3,270,816 + MPMX20_03115 0.15 +1.4
3,270,856 - MPMX20_03115 0.20 +1.8
3,270,933 - MPMX20_03115 0.28 +2.3
3,270,967 + MPMX20_03115 0.32 +2.3
3,270,998 - MPMX20_03115 0.36 +1.8
3,271,013 - MPMX20_03115 0.38 +1.7
3,271,075 + MPMX20_03115 0.45 +2.2
3,271,100 - MPMX20_03115 0.47 +2.6
3,271,148 - MPMX20_03115 0.53 +2.2
3,271,281 - MPMX20_03115 0.68 +2.7
3,271,283 + MPMX20_03115 0.68 +2.8
3,271,301 - MPMX20_03115 0.70 +2.7
3,271,330 + MPMX20_03115 0.73 +2.4
3,271,370 - MPMX20_03115 0.78 +1.9
3,271,398 + MPMX20_03115 0.81 +2.3
3,271,406 - MPMX20_03115 0.82 +2.7
3,271,431 + MPMX20_03115 0.85 +2.4
3,271,431 - MPMX20_03115 0.85 +0.8
3,271,439 - MPMX20_03115 0.86 +3.1
3,271,637 + -1.3
3,271,637 + +0.1
3,271,645 - -0.6
3,271,797 - MPMX20_03116 0.14 -0.3
3,271,815 - MPMX20_03116 0.17 -0.3
3,271,835 + MPMX20_03116 0.20 -1.6
3,271,838 - MPMX20_03116 0.20 -0.4
3,271,840 + MPMX20_03116 0.20 +0.1
3,271,842 + MPMX20_03116 0.21 -0.6
3,271,843 - MPMX20_03116 0.21 -2.5
3,271,848 - MPMX20_03116 0.22 -0.2
3,271,848 - MPMX20_03116 0.22 -0.6
3,271,873 - MPMX20_03116 0.25 -2.0
3,271,884 + MPMX20_03116 0.27 -2.2
3,271,884 + MPMX20_03116 0.27 -0.4
3,271,892 - MPMX20_03116 0.28 +1.4
3,271,892 - MPMX20_03116 0.28 -0.3
3,271,918 + MPMX20_03116 0.31 -0.3
3,271,984 - MPMX20_03116 0.40 -0.2
3,272,005 + MPMX20_03116 0.43 -1.9
3,272,046 + MPMX20_03116 0.49 +0.8
3,272,166 + MPMX20_03116 0.66 +0.5
3,272,166 + MPMX20_03116 0.66 -1.7
3,272,166 + MPMX20_03116 0.66 -0.3
3,272,166 + MPMX20_03116 0.66 -2.0
3,272,166 + MPMX20_03116 0.66 -0.4
3,272,174 - MPMX20_03116 0.67 -1.1
3,272,174 - MPMX20_03116 0.67 -1.7
3,272,174 - MPMX20_03116 0.67 +0.5
3,272,174 - MPMX20_03116 0.67 -0.7
3,272,174 - MPMX20_03116 0.67 -1.0
3,272,174 - MPMX20_03116 0.67 -2.2
3,272,187 + MPMX20_03116 0.69 -1.0
3,272,187 + MPMX20_03116 0.69 +1.5
3,272,187 + MPMX20_03116 0.69 -1.4
3,272,187 + MPMX20_03116 0.69 -1.9
3,272,187 + MPMX20_03116 0.69 -1.8
3,272,187 + MPMX20_03116 0.69 +1.6
3,272,187 + MPMX20_03116 0.69 +0.7
3,272,187 + MPMX20_03116 0.69 +1.9
3,272,187 + MPMX20_03116 0.69 -2.3
3,272,187 + MPMX20_03116 0.69 -1.1
3,272,187 + MPMX20_03116 0.69 -1.2
3,272,187 + MPMX20_03116 0.69 +0.2
3,272,187 + MPMX20_03116 0.69 -0.3
3,272,187 + MPMX20_03116 0.69 -0.9
3,272,187 + MPMX20_03116 0.69 -2.1
3,272,194 + MPMX20_03116 0.70 -1.0
3,272,195 - MPMX20_03116 0.70 -0.9
3,272,195 - MPMX20_03116 0.70 -0.7
3,272,195 - MPMX20_03116 0.70 -1.1
3,272,195 - MPMX20_03116 0.70 -0.2
3,272,195 - MPMX20_03116 0.70 -1.2
3,272,195 - MPMX20_03116 0.70 -0.2
3,272,195 - MPMX20_03116 0.70 -2.8
3,272,195 - MPMX20_03116 0.70 -2.4
3,272,195 - MPMX20_03116 0.70 +0.2
3,272,195 - MPMX20_03116 0.70 -1.2
3,272,195 - MPMX20_03116 0.70 -0.4
3,272,195 - MPMX20_03116 0.70 +0.5
3,272,271 + MPMX20_03116 0.80 -0.4
3,272,355 - -0.0
3,272,355 - -1.3
3,272,360 - -2.5
3,272,360 - +1.2
3,272,369 + +2.0
3,272,369 + -1.5
3,272,369 + -0.1
3,272,418 + +0.5
3,272,418 + +0.3
3,272,426 - +0.8
3,272,469 - -1.1
3,272,469 - +0.2
3,272,469 - +0.1
3,272,487 + +1.3
3,272,496 + -1.4
3,272,516 - +0.2

Or see this region's nucleotide sequence