Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00966

Experiment: Uridine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00965 and MPMX20_00966 are separated by 14 nucleotidesMPMX20_00966 and MPMX20_00967 overlap by 4 nucleotidesMPMX20_00967 and MPMX20_00968 are separated by 249 nucleotidesMPMX20_00968 and MPMX20_00969 overlap by 4 nucleotides MPMX20_00965: MPMX20_00965 - Peptide antibiotic transporter SbmA, at 1,018,036 to 1,019,256 _00965 MPMX20_00966: MPMX20_00966 - hypothetical protein, at 1,019,271 to 1,020,368 _00966 MPMX20_00967: MPMX20_00967 - Inner membrane protein YaiY, at 1,020,365 to 1,020,667 _00967 MPMX20_00968: MPMX20_00968 - hypothetical protein, at 1,020,917 to 1,021,153 _00968 MPMX20_00969: MPMX20_00969 - D-alanine--D-alanine ligase A, at 1,021,150 to 1,022,250 _00969 Position (kb) 1019 1020 1021Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1018.273 kb on - strand, within MPMX20_00965at 1018.292 kb on + strand, within MPMX20_00965at 1018.335 kb on - strand, within MPMX20_00965at 1018.353 kb on + strand, within MPMX20_00965at 1018.362 kb on + strand, within MPMX20_00965at 1018.367 kb on + strand, within MPMX20_00965at 1018.367 kb on + strand, within MPMX20_00965at 1018.375 kb on - strand, within MPMX20_00965at 1018.385 kb on + strand, within MPMX20_00965at 1018.389 kb on + strand, within MPMX20_00965at 1018.389 kb on + strand, within MPMX20_00965at 1018.397 kb on - strand, within MPMX20_00965at 1018.397 kb on - strand, within MPMX20_00965at 1018.424 kb on + strand, within MPMX20_00965at 1018.424 kb on + strand, within MPMX20_00965at 1018.471 kb on - strand, within MPMX20_00965at 1018.551 kb on + strand, within MPMX20_00965at 1018.554 kb on + strand, within MPMX20_00965at 1018.568 kb on + strand, within MPMX20_00965at 1018.576 kb on - strand, within MPMX20_00965at 1018.592 kb on + strand, within MPMX20_00965at 1018.592 kb on + strand, within MPMX20_00965at 1018.600 kb on - strand, within MPMX20_00965at 1018.611 kb on + strand, within MPMX20_00965at 1018.611 kb on + strand, within MPMX20_00965at 1018.815 kb on + strand, within MPMX20_00965at 1018.815 kb on + strand, within MPMX20_00965at 1018.820 kb on + strand, within MPMX20_00965at 1018.820 kb on + strand, within MPMX20_00965at 1018.820 kb on + strand, within MPMX20_00965at 1018.820 kb on + strand, within MPMX20_00965at 1018.820 kb on + strand, within MPMX20_00965at 1018.820 kb on + strand, within MPMX20_00965at 1018.820 kb on + strand, within MPMX20_00965at 1018.828 kb on - strand, within MPMX20_00965at 1018.828 kb on - strand, within MPMX20_00965at 1018.828 kb on - strand, within MPMX20_00965at 1018.879 kb on + strand, within MPMX20_00965at 1018.884 kb on + strand, within MPMX20_00965at 1018.887 kb on - strand, within MPMX20_00965at 1018.887 kb on - strand, within MPMX20_00965at 1018.900 kb on + strand, within MPMX20_00965at 1018.933 kb on - strand, within MPMX20_00965at 1018.938 kb on + strand, within MPMX20_00965at 1018.938 kb on + strand, within MPMX20_00965at 1018.938 kb on + strand, within MPMX20_00965at 1018.938 kb on + strand, within MPMX20_00965at 1018.946 kb on - strand, within MPMX20_00965at 1018.946 kb on - strand, within MPMX20_00965at 1018.946 kb on - strand, within MPMX20_00965at 1018.946 kb on - strand, within MPMX20_00965at 1018.946 kb on - strand, within MPMX20_00965at 1018.946 kb on - strand, within MPMX20_00965at 1018.969 kb on - strand, within MPMX20_00965at 1019.049 kb on + strand, within MPMX20_00965at 1019.134 kb on - strand, within MPMX20_00965at 1019.167 kb on + strandat 1019.171 kb on - strandat 1019.196 kb on - strandat 1019.206 kb on - strandat 1019.206 kb on - strandat 1019.219 kb on + strandat 1019.219 kb on + strandat 1019.227 kb on - strandat 1019.236 kb on - strandat 1019.254 kb on - strandat 1019.268 kb on + strandat 1019.288 kb on - strandat 1019.335 kb on - strandat 1019.385 kb on - strand, within MPMX20_00966at 1019.392 kb on + strand, within MPMX20_00966at 1019.395 kb on - strand, within MPMX20_00966at 1019.395 kb on - strand, within MPMX20_00966at 1019.542 kb on + strand, within MPMX20_00966at 1019.542 kb on + strand, within MPMX20_00966at 1019.550 kb on - strand, within MPMX20_00966at 1019.550 kb on - strand, within MPMX20_00966at 1019.550 kb on - strand, within MPMX20_00966at 1019.550 kb on - strand, within MPMX20_00966at 1019.560 kb on - strand, within MPMX20_00966at 1019.565 kb on - strand, within MPMX20_00966at 1019.567 kb on + strand, within MPMX20_00966at 1019.610 kb on + strand, within MPMX20_00966at 1019.618 kb on - strand, within MPMX20_00966at 1019.690 kb on - strand, within MPMX20_00966at 1019.706 kb on + strand, within MPMX20_00966at 1019.730 kb on + strand, within MPMX20_00966at 1019.754 kb on + strand, within MPMX20_00966at 1019.763 kb on - strand, within MPMX20_00966at 1019.771 kb on - strand, within MPMX20_00966at 1019.779 kb on + strand, within MPMX20_00966at 1019.779 kb on + strand, within MPMX20_00966at 1019.787 kb on - strand, within MPMX20_00966at 1019.812 kb on + strand, within MPMX20_00966at 1019.812 kb on + strand, within MPMX20_00966at 1019.815 kb on - strand, within MPMX20_00966at 1019.945 kb on - strand, within MPMX20_00966at 1019.972 kb on + strand, within MPMX20_00966at 1019.972 kb on + strand, within MPMX20_00966at 1019.972 kb on + strand, within MPMX20_00966at 1020.037 kb on + strand, within MPMX20_00966at 1020.099 kb on + strand, within MPMX20_00966at 1020.127 kb on + strand, within MPMX20_00966at 1020.127 kb on + strand, within MPMX20_00966at 1020.127 kb on + strand, within MPMX20_00966at 1020.127 kb on + strand, within MPMX20_00966at 1020.127 kb on + strand, within MPMX20_00966at 1020.127 kb on + strand, within MPMX20_00966at 1020.135 kb on - strand, within MPMX20_00966at 1020.135 kb on - strand, within MPMX20_00966at 1020.135 kb on - strand, within MPMX20_00966at 1020.135 kb on - strand, within MPMX20_00966at 1020.135 kb on - strand, within MPMX20_00966at 1020.135 kb on - strand, within MPMX20_00966at 1020.203 kb on + strand, within MPMX20_00966at 1020.203 kb on + strand, within MPMX20_00966at 1020.256 kb on + strand, within MPMX20_00966at 1020.279 kb on - strandat 1020.298 kb on + strandat 1020.313 kb on - strandat 1020.361 kb on - strandat 1020.388 kb on + strandat 1020.404 kb on + strand, within MPMX20_00967at 1020.421 kb on - strand, within MPMX20_00967at 1020.439 kb on + strand, within MPMX20_00967at 1020.486 kb on + strand, within MPMX20_00967at 1020.486 kb on + strand, within MPMX20_00967at 1020.486 kb on + strand, within MPMX20_00967at 1020.494 kb on - strand, within MPMX20_00967at 1020.494 kb on - strand, within MPMX20_00967at 1020.494 kb on - strand, within MPMX20_00967at 1020.501 kb on + strand, within MPMX20_00967at 1020.526 kb on - strand, within MPMX20_00967at 1020.526 kb on - strand, within MPMX20_00967at 1020.528 kb on - strand, within MPMX20_00967at 1020.528 kb on - strand, within MPMX20_00967at 1020.564 kb on - strand, within MPMX20_00967at 1020.564 kb on - strand, within MPMX20_00967at 1020.586 kb on + strand, within MPMX20_00967at 1020.711 kb on + strandat 1020.725 kb on + strandat 1020.725 kb on + strandat 1020.725 kb on + strandat 1020.733 kb on - strandat 1020.733 kb on - strandat 1020.743 kb on + strandat 1020.766 kb on - strandat 1020.766 kb on - strandat 1020.784 kb on - strandat 1020.797 kb on - strandat 1020.858 kb on + strandat 1020.866 kb on - strandat 1020.866 kb on - strandat 1020.866 kb on - strandat 1020.866 kb on - strandat 1020.866 kb on - strandat 1020.866 kb on - strandat 1020.866 kb on - strandat 1020.927 kb on + strandat 1020.927 kb on + strandat 1020.927 kb on + strandat 1020.927 kb on + strandat 1020.927 kb on + strandat 1020.927 kb on + strandat 1020.927 kb on + strandat 1020.935 kb on - strandat 1020.935 kb on - strandat 1020.935 kb on - strandat 1020.961 kb on - strand, within MPMX20_00968at 1020.995 kb on + strand, within MPMX20_00968at 1021.006 kb on + strand, within MPMX20_00968at 1021.014 kb on - strand, within MPMX20_00968at 1021.033 kb on + strand, within MPMX20_00968at 1021.195 kb on - strandat 1021.219 kb on + strandat 1021.219 kb on + strandat 1021.227 kb on + strandat 1021.227 kb on - strandat 1021.227 kb on - strandat 1021.232 kb on + strandat 1021.235 kb on - strandat 1021.268 kb on - strand, within MPMX20_00969at 1021.268 kb on - strand, within MPMX20_00969at 1021.296 kb on - strand, within MPMX20_00969at 1021.296 kb on - strand, within MPMX20_00969at 1021.344 kb on + strand, within MPMX20_00969

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (C)
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1,018,273 - MPMX20_00965 0.19 +0.1
1,018,292 + MPMX20_00965 0.21 -0.2
1,018,335 - MPMX20_00965 0.24 -1.1
1,018,353 + MPMX20_00965 0.26 -0.1
1,018,362 + MPMX20_00965 0.27 -0.7
1,018,367 + MPMX20_00965 0.27 +1.6
1,018,367 + MPMX20_00965 0.27 +0.5
1,018,375 - MPMX20_00965 0.28 -0.9
1,018,385 + MPMX20_00965 0.29 -0.4
1,018,389 + MPMX20_00965 0.29 -0.7
1,018,389 + MPMX20_00965 0.29 -0.5
1,018,397 - MPMX20_00965 0.30 +0.8
1,018,397 - MPMX20_00965 0.30 -0.2
1,018,424 + MPMX20_00965 0.32 -2.0
1,018,424 + MPMX20_00965 0.32 -0.2
1,018,471 - MPMX20_00965 0.36 -0.8
1,018,551 + MPMX20_00965 0.42 +0.4
1,018,554 + MPMX20_00965 0.42 +0.4
1,018,568 + MPMX20_00965 0.44 -0.1
1,018,576 - MPMX20_00965 0.44 +0.4
1,018,592 + MPMX20_00965 0.46 +0.4
1,018,592 + MPMX20_00965 0.46 +0.3
1,018,600 - MPMX20_00965 0.46 +1.8
1,018,611 + MPMX20_00965 0.47 +1.2
1,018,611 + MPMX20_00965 0.47 +0.5
1,018,815 + MPMX20_00965 0.64 -0.4
1,018,815 + MPMX20_00965 0.64 +0.2
1,018,820 + MPMX20_00965 0.64 -0.8
1,018,820 + MPMX20_00965 0.64 -0.7
1,018,820 + MPMX20_00965 0.64 +0.2
1,018,820 + MPMX20_00965 0.64 -0.1
1,018,820 + MPMX20_00965 0.64 +1.8
1,018,820 + MPMX20_00965 0.64 -0.2
1,018,820 + MPMX20_00965 0.64 +0.7
1,018,828 - MPMX20_00965 0.65 +0.6
1,018,828 - MPMX20_00965 0.65 +1.1
1,018,828 - MPMX20_00965 0.65 -0.3
1,018,879 + MPMX20_00965 0.69 -0.0
1,018,884 + MPMX20_00965 0.69 +1.6
1,018,887 - MPMX20_00965 0.70 +0.8
1,018,887 - MPMX20_00965 0.70 +0.8
1,018,900 + MPMX20_00965 0.71 +1.1
1,018,933 - MPMX20_00965 0.73 +0.3
1,018,938 + MPMX20_00965 0.74 -1.3
1,018,938 + MPMX20_00965 0.74 -0.6
1,018,938 + MPMX20_00965 0.74 -1.4
1,018,938 + MPMX20_00965 0.74 -0.3
1,018,946 - MPMX20_00965 0.75 +0.6
1,018,946 - MPMX20_00965 0.75 -1.1
1,018,946 - MPMX20_00965 0.75 +0.4
1,018,946 - MPMX20_00965 0.75 +0.1
1,018,946 - MPMX20_00965 0.75 +0.5
1,018,946 - MPMX20_00965 0.75 -0.4
1,018,969 - MPMX20_00965 0.76 -1.6
1,019,049 + MPMX20_00965 0.83 +0.1
1,019,134 - MPMX20_00965 0.90 -2.1
1,019,167 + -1.0
1,019,171 - -0.7
1,019,196 - +2.1
1,019,206 - -0.3
1,019,206 - -0.2
1,019,219 + +0.8
1,019,219 + -0.7
1,019,227 - -0.2
1,019,236 - -0.0
1,019,254 - +1.4
1,019,268 + -0.0
1,019,288 - -0.0
1,019,335 - +0.9
1,019,385 - MPMX20_00966 0.10 +1.0
1,019,392 + MPMX20_00966 0.11 +0.8
1,019,395 - MPMX20_00966 0.11 +0.3
1,019,395 - MPMX20_00966 0.11 -0.7
1,019,542 + MPMX20_00966 0.25 -0.8
1,019,542 + MPMX20_00966 0.25 +0.0
1,019,550 - MPMX20_00966 0.25 +0.8
1,019,550 - MPMX20_00966 0.25 -0.6
1,019,550 - MPMX20_00966 0.25 -0.1
1,019,550 - MPMX20_00966 0.25 -0.6
1,019,560 - MPMX20_00966 0.26 +0.2
1,019,565 - MPMX20_00966 0.27 -0.2
1,019,567 + MPMX20_00966 0.27 -1.8
1,019,610 + MPMX20_00966 0.31 -0.4
1,019,618 - MPMX20_00966 0.32 +0.8
1,019,690 - MPMX20_00966 0.38 +0.0
1,019,706 + MPMX20_00966 0.40 -0.1
1,019,730 + MPMX20_00966 0.42 -1.4
1,019,754 + MPMX20_00966 0.44 +0.3
1,019,763 - MPMX20_00966 0.45 -1.0
1,019,771 - MPMX20_00966 0.46 +0.8
1,019,779 + MPMX20_00966 0.46 +0.4
1,019,779 + MPMX20_00966 0.46 +1.2
1,019,787 - MPMX20_00966 0.47 +2.8
1,019,812 + MPMX20_00966 0.49 -0.1
1,019,812 + MPMX20_00966 0.49 +0.5
1,019,815 - MPMX20_00966 0.50 -0.0
1,019,945 - MPMX20_00966 0.61 -1.1
1,019,972 + MPMX20_00966 0.64 +1.0
1,019,972 + MPMX20_00966 0.64 +2.0
1,019,972 + MPMX20_00966 0.64 -1.1
1,020,037 + MPMX20_00966 0.70 +0.3
1,020,099 + MPMX20_00966 0.75 -0.6
1,020,127 + MPMX20_00966 0.78 -0.1
1,020,127 + MPMX20_00966 0.78 -0.5
1,020,127 + MPMX20_00966 0.78 -1.5
1,020,127 + MPMX20_00966 0.78 +1.2
1,020,127 + MPMX20_00966 0.78 -0.7
1,020,127 + MPMX20_00966 0.78 +2.0
1,020,135 - MPMX20_00966 0.79 +0.8
1,020,135 - MPMX20_00966 0.79 +0.2
1,020,135 - MPMX20_00966 0.79 -0.1
1,020,135 - MPMX20_00966 0.79 -0.6
1,020,135 - MPMX20_00966 0.79 +0.6
1,020,135 - MPMX20_00966 0.79 -1.6
1,020,203 + MPMX20_00966 0.85 +0.5
1,020,203 + MPMX20_00966 0.85 +1.0
1,020,256 + MPMX20_00966 0.90 -0.2
1,020,279 - +0.3
1,020,298 + -1.5
1,020,313 - +0.2
1,020,361 - +0.4
1,020,388 + -0.6
1,020,404 + MPMX20_00967 0.13 +0.4
1,020,421 - MPMX20_00967 0.18 -0.9
1,020,439 + MPMX20_00967 0.24 -1.0
1,020,486 + MPMX20_00967 0.40 -1.8
1,020,486 + MPMX20_00967 0.40 -2.1
1,020,486 + MPMX20_00967 0.40 +0.0
1,020,494 - MPMX20_00967 0.43 -0.0
1,020,494 - MPMX20_00967 0.43 +0.0
1,020,494 - MPMX20_00967 0.43 +0.9
1,020,501 + MPMX20_00967 0.45 -1.1
1,020,526 - MPMX20_00967 0.53 +0.7
1,020,526 - MPMX20_00967 0.53 +1.4
1,020,528 - MPMX20_00967 0.54 +1.4
1,020,528 - MPMX20_00967 0.54 -0.8
1,020,564 - MPMX20_00967 0.66 +0.2
1,020,564 - MPMX20_00967 0.66 +0.8
1,020,586 + MPMX20_00967 0.73 -0.3
1,020,711 + -1.7
1,020,725 + -0.2
1,020,725 + -0.5
1,020,725 + -0.4
1,020,733 - +0.1
1,020,733 - -0.4
1,020,743 + -1.7
1,020,766 - -0.8
1,020,766 - -2.5
1,020,784 - -0.9
1,020,797 - -1.4
1,020,858 + +2.4
1,020,866 - -1.8
1,020,866 - -2.8
1,020,866 - -0.6
1,020,866 - -0.1
1,020,866 - -0.6
1,020,866 - -0.6
1,020,866 - -1.3
1,020,927 + -1.1
1,020,927 + +0.2
1,020,927 + -2.2
1,020,927 + -1.0
1,020,927 + +0.2
1,020,927 + +1.4
1,020,927 + -0.5
1,020,935 - +0.1
1,020,935 - +0.2
1,020,935 - -0.3
1,020,961 - MPMX20_00968 0.19 +0.8
1,020,995 + MPMX20_00968 0.33 -0.2
1,021,006 + MPMX20_00968 0.38 -1.2
1,021,014 - MPMX20_00968 0.41 -0.6
1,021,033 + MPMX20_00968 0.49 +1.4
1,021,195 - -0.5
1,021,219 + -0.8
1,021,219 + +2.0
1,021,227 + +0.3
1,021,227 - -0.6
1,021,227 - +0.9
1,021,232 + -0.2
1,021,235 - +0.5
1,021,268 - MPMX20_00969 0.11 -0.7
1,021,268 - MPMX20_00969 0.11 -0.4
1,021,296 - MPMX20_00969 0.13 +0.5
1,021,296 - MPMX20_00969 0.13 -0.9
1,021,344 + MPMX20_00969 0.18 +0.6

Or see this region's nucleotide sequence