Experiment: Adenine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02074 and MPMX20_02075 are separated by 17 nucleotides MPMX20_02075 and MPMX20_02076 overlap by 4 nucleotides MPMX20_02076 and MPMX20_02077 are separated by 4 nucleotides MPMX20_02077 and MPMX20_02078 are separated by 11 nucleotides
MPMX20_02074: MPMX20_02074 - hypothetical protein, at 2,166,913 to 2,167,971
_02074
MPMX20_02075: MPMX20_02075 - hypothetical protein, at 2,167,989 to 2,168,804
_02075
MPMX20_02076: MPMX20_02076 - Bicarbonate transport ATP-binding protein CmpD, at 2,168,801 to 2,169,577
_02076
MPMX20_02077: MPMX20_02077 - hypothetical protein, at 2,169,582 to 2,170,298
_02077
MPMX20_02078: MPMX20_02078 - hypothetical protein, at 2,170,310 to 2,170,942
_02078
Position (kb)
2168
2169
2170 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2167.803 kb on + strand, within MPMX20_02074 at 2167.870 kb on + strand at 2167.897 kb on - strand at 2167.902 kb on - strand at 2167.903 kb on + strand at 2167.908 kb on - strand at 2167.992 kb on - strand at 2168.054 kb on - strand at 2168.092 kb on + strand, within MPMX20_02075 at 2168.092 kb on + strand, within MPMX20_02075 at 2168.165 kb on - strand, within MPMX20_02075 at 2168.183 kb on - strand, within MPMX20_02075 at 2168.193 kb on - strand, within MPMX20_02075 at 2168.198 kb on + strand, within MPMX20_02075 at 2168.206 kb on - strand, within MPMX20_02075 at 2168.211 kb on - strand, within MPMX20_02075 at 2168.221 kb on + strand, within MPMX20_02075 at 2168.224 kb on - strand, within MPMX20_02075 at 2168.228 kb on - strand, within MPMX20_02075 at 2168.253 kb on + strand, within MPMX20_02075 at 2168.266 kb on + strand, within MPMX20_02075 at 2168.402 kb on + strand, within MPMX20_02075 at 2168.410 kb on - strand, within MPMX20_02075 at 2168.452 kb on + strand, within MPMX20_02075 at 2168.460 kb on - strand, within MPMX20_02075 at 2168.521 kb on + strand, within MPMX20_02075 at 2168.526 kb on + strand, within MPMX20_02075 at 2168.537 kb on - strand, within MPMX20_02075 at 2168.563 kb on - strand, within MPMX20_02075 at 2168.647 kb on + strand, within MPMX20_02075 at 2168.654 kb on - strand, within MPMX20_02075 at 2168.691 kb on + strand, within MPMX20_02075 at 2168.716 kb on + strand, within MPMX20_02075 at 2168.849 kb on - strand at 2168.852 kb on + strand at 2168.852 kb on + strand at 2168.870 kb on - strand at 2168.875 kb on + strand at 2168.903 kb on - strand, within MPMX20_02076 at 2168.996 kb on - strand, within MPMX20_02076 at 2169.008 kb on + strand, within MPMX20_02076 at 2169.213 kb on - strand, within MPMX20_02076 at 2169.242 kb on + strand, within MPMX20_02076 at 2169.250 kb on - strand, within MPMX20_02076 at 2169.259 kb on + strand, within MPMX20_02076 at 2169.272 kb on - strand, within MPMX20_02076 at 2169.308 kb on + strand, within MPMX20_02076 at 2169.309 kb on + strand, within MPMX20_02076 at 2169.309 kb on + strand, within MPMX20_02076 at 2169.313 kb on + strand, within MPMX20_02076 at 2169.340 kb on - strand, within MPMX20_02076 at 2169.363 kb on - strand, within MPMX20_02076 at 2169.411 kb on + strand, within MPMX20_02076 at 2169.411 kb on + strand, within MPMX20_02076 at 2169.418 kb on - strand, within MPMX20_02076 at 2169.419 kb on - strand, within MPMX20_02076 at 2169.477 kb on - strand, within MPMX20_02076 at 2169.485 kb on - strand, within MPMX20_02076 at 2169.530 kb on + strand at 2169.543 kb on - strand at 2169.543 kb on - strand at 2169.543 kb on - strand at 2169.572 kb on + strand at 2169.577 kb on + strand at 2169.620 kb on - strand at 2169.632 kb on + strand at 2169.632 kb on + strand at 2169.655 kb on + strand, within MPMX20_02077 at 2169.665 kb on + strand, within MPMX20_02077 at 2169.685 kb on - strand, within MPMX20_02077 at 2169.730 kb on - strand, within MPMX20_02077 at 2169.746 kb on + strand, within MPMX20_02077 at 2169.770 kb on - strand, within MPMX20_02077 at 2169.770 kb on - strand, within MPMX20_02077 at 2169.919 kb on + strand, within MPMX20_02077 at 2169.919 kb on + strand, within MPMX20_02077 at 2169.919 kb on + strand, within MPMX20_02077 at 2169.919 kb on + strand, within MPMX20_02077 at 2169.927 kb on - strand, within MPMX20_02077 at 2169.927 kb on - strand, within MPMX20_02077 at 2169.977 kb on + strand, within MPMX20_02077 at 2170.064 kb on - strand, within MPMX20_02077 at 2170.086 kb on - strand, within MPMX20_02077 at 2170.104 kb on - strand, within MPMX20_02077 at 2170.131 kb on - strand, within MPMX20_02077 at 2170.131 kb on - strand, within MPMX20_02077 at 2170.131 kb on - strand, within MPMX20_02077 at 2170.156 kb on - strand, within MPMX20_02077 at 2170.165 kb on + strand, within MPMX20_02077 at 2170.300 kb on - strand at 2170.360 kb on + strand at 2170.370 kb on + strand at 2170.379 kb on - strand, within MPMX20_02078 at 2170.384 kb on + strand, within MPMX20_02078 at 2170.453 kb on + strand, within MPMX20_02078 at 2170.453 kb on + strand, within MPMX20_02078 at 2170.461 kb on - strand, within MPMX20_02078 at 2170.493 kb on - strand, within MPMX20_02078 at 2170.527 kb on - strand, within MPMX20_02078 at 2170.541 kb on + strand, within MPMX20_02078 at 2170.542 kb on - strand, within MPMX20_02078 at 2170.558 kb on + strand, within MPMX20_02078
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (C) remove 2,167,803 + MPMX20_02074 0.84 -0.0 2,167,870 + -0.0 2,167,897 - -3.3 2,167,902 - +0.0 2,167,903 + -1.7 2,167,908 - +0.3 2,167,992 - -0.0 2,168,054 - -2.6 2,168,092 + MPMX20_02075 0.13 +1.3 2,168,092 + MPMX20_02075 0.13 +0.7 2,168,165 - MPMX20_02075 0.22 +2.3 2,168,183 - MPMX20_02075 0.24 +1.2 2,168,193 - MPMX20_02075 0.25 +0.0 2,168,198 + MPMX20_02075 0.26 +0.7 2,168,206 - MPMX20_02075 0.27 +2.3 2,168,211 - MPMX20_02075 0.27 +0.6 2,168,221 + MPMX20_02075 0.28 +1.1 2,168,224 - MPMX20_02075 0.29 -2.9 2,168,228 - MPMX20_02075 0.29 +0.7 2,168,253 + MPMX20_02075 0.32 +1.3 2,168,266 + MPMX20_02075 0.34 +1.8 2,168,402 + MPMX20_02075 0.51 +2.0 2,168,410 - MPMX20_02075 0.52 +1.8 2,168,452 + MPMX20_02075 0.57 -0.4 2,168,460 - MPMX20_02075 0.58 +1.1 2,168,521 + MPMX20_02075 0.65 +1.1 2,168,526 + MPMX20_02075 0.66 -0.3 2,168,537 - MPMX20_02075 0.67 -0.4 2,168,563 - MPMX20_02075 0.70 -1.0 2,168,647 + MPMX20_02075 0.81 +0.7 2,168,654 - MPMX20_02075 0.81 -0.4 2,168,691 + MPMX20_02075 0.86 -2.1 2,168,716 + MPMX20_02075 0.89 +0.2 2,168,849 - +3.2 2,168,852 + +1.4 2,168,852 + -0.9 2,168,870 - -0.2 2,168,875 + -2.9 2,168,903 - MPMX20_02076 0.13 +1.4 2,168,996 - MPMX20_02076 0.25 -0.1 2,169,008 + MPMX20_02076 0.27 +1.3 2,169,213 - MPMX20_02076 0.53 -1.1 2,169,242 + MPMX20_02076 0.57 +1.5 2,169,250 - MPMX20_02076 0.58 -0.8 2,169,259 + MPMX20_02076 0.59 -3.5 2,169,272 - MPMX20_02076 0.61 -3.9 2,169,308 + MPMX20_02076 0.65 +1.6 2,169,309 + MPMX20_02076 0.65 -2.5 2,169,309 + MPMX20_02076 0.65 -2.7 2,169,313 + MPMX20_02076 0.66 +0.4 2,169,340 - MPMX20_02076 0.69 -0.2 2,169,363 - MPMX20_02076 0.72 -1.9 2,169,411 + MPMX20_02076 0.79 -2.6 2,169,411 + MPMX20_02076 0.79 +0.3 2,169,418 - MPMX20_02076 0.79 -2.5 2,169,419 - MPMX20_02076 0.80 -1.0 2,169,477 - MPMX20_02076 0.87 -0.5 2,169,485 - MPMX20_02076 0.88 +0.6 2,169,530 + -0.1 2,169,543 - +1.4 2,169,543 - -1.4 2,169,543 - -3.1 2,169,572 + +0.4 2,169,577 + +0.8 2,169,620 - +1.7 2,169,632 + +0.7 2,169,632 + +2.2 2,169,655 + MPMX20_02077 0.10 +2.0 2,169,665 + MPMX20_02077 0.12 -3.3 2,169,685 - MPMX20_02077 0.14 +1.2 2,169,730 - MPMX20_02077 0.21 +1.0 2,169,746 + MPMX20_02077 0.23 -1.7 2,169,770 - MPMX20_02077 0.26 +0.2 2,169,770 - MPMX20_02077 0.26 -0.7 2,169,919 + MPMX20_02077 0.47 +1.2 2,169,919 + MPMX20_02077 0.47 -0.4 2,169,919 + MPMX20_02077 0.47 -1.6 2,169,919 + MPMX20_02077 0.47 -0.8 2,169,927 - MPMX20_02077 0.48 -0.6 2,169,927 - MPMX20_02077 0.48 +1.9 2,169,977 + MPMX20_02077 0.55 -3.5 2,170,064 - MPMX20_02077 0.67 +1.4 2,170,086 - MPMX20_02077 0.70 -1.2 2,170,104 - MPMX20_02077 0.73 -1.4 2,170,131 - MPMX20_02077 0.77 +1.5 2,170,131 - MPMX20_02077 0.77 -0.4 2,170,131 - MPMX20_02077 0.77 +2.2 2,170,156 - MPMX20_02077 0.80 +0.5 2,170,165 + MPMX20_02077 0.81 +1.3 2,170,300 - +0.5 2,170,360 + +1.6 2,170,370 + -4.5 2,170,379 - MPMX20_02078 0.11 +1.6 2,170,384 + MPMX20_02078 0.12 +0.4 2,170,453 + MPMX20_02078 0.23 +0.7 2,170,453 + MPMX20_02078 0.23 +0.7 2,170,461 - MPMX20_02078 0.24 -2.4 2,170,493 - MPMX20_02078 0.29 +1.8 2,170,527 - MPMX20_02078 0.34 -2.3 2,170,541 + MPMX20_02078 0.36 +0.5 2,170,542 - MPMX20_02078 0.37 +0.3 2,170,558 + MPMX20_02078 0.39 +0.8
Or see this region's nucleotide sequence