Experiment: Parabanic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03336 and MPMX20_03337 overlap by 1 nucleotides MPMX20_03337 and MPMX20_03338 are separated by 119 nucleotides MPMX20_03338 and MPMX20_03339 are separated by 109 nucleotides
MPMX20_03336: MPMX20_03336 - tRNA(Met) cytidine acetyltransferase TmcA, at 3,508,909 to 3,510,882
_03336
MPMX20_03337: MPMX20_03337 - hypothetical protein, at 3,510,882 to 3,511,751
_03337
MPMX20_03338: MPMX20_03338 - Phosphoribosylaminoimidazole-succinocarboxamide synthase, at 3,511,871 to 3,512,584
_03338
MPMX20_03339: MPMX20_03339 - Outer membrane protein assembly factor BamC, at 3,512,694 to 3,513,728
_03339
Position (kb)
3510
3511
3512 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 3509.988 kb on - strand, within MPMX20_03336 at 3510.046 kb on - strand, within MPMX20_03336 at 3510.227 kb on - strand, within MPMX20_03336 at 3510.262 kb on - strand, within MPMX20_03336 at 3510.271 kb on + strand, within MPMX20_03336 at 3510.306 kb on - strand, within MPMX20_03336 at 3510.414 kb on - strand, within MPMX20_03336 at 3510.536 kb on - strand, within MPMX20_03336 at 3510.568 kb on - strand, within MPMX20_03336 at 3510.744 kb on + strand at 3510.772 kb on + strand at 3510.777 kb on + strand at 3510.777 kb on + strand at 3510.777 kb on + strand at 3510.777 kb on + strand at 3510.779 kb on + strand at 3510.785 kb on - strand at 3510.787 kb on - strand at 3510.787 kb on - strand at 3510.890 kb on - strand at 3510.897 kb on - strand at 3510.901 kb on + strand at 3510.901 kb on + strand at 3510.901 kb on + strand at 3510.901 kb on + strand at 3510.901 kb on + strand at 3510.909 kb on - strand at 3510.909 kb on - strand at 3510.909 kb on - strand at 3510.909 kb on - strand at 3510.909 kb on - strand at 3510.909 kb on - strand at 3510.909 kb on - strand at 3510.909 kb on - strand at 3510.956 kb on - strand at 3510.974 kb on + strand, within MPMX20_03337 at 3510.974 kb on + strand, within MPMX20_03337 at 3510.974 kb on + strand, within MPMX20_03337 at 3510.974 kb on + strand, within MPMX20_03337 at 3511.048 kb on - strand, within MPMX20_03337 at 3511.057 kb on + strand, within MPMX20_03337 at 3511.170 kb on - strand, within MPMX20_03337 at 3511.213 kb on - strand, within MPMX20_03337 at 3511.233 kb on + strand, within MPMX20_03337 at 3511.340 kb on + strand, within MPMX20_03337 at 3511.340 kb on + strand, within MPMX20_03337 at 3511.346 kb on - strand, within MPMX20_03337 at 3511.348 kb on - strand, within MPMX20_03337 at 3511.356 kb on - strand, within MPMX20_03337 at 3511.407 kb on + strand, within MPMX20_03337 at 3511.435 kb on - strand, within MPMX20_03337 at 3511.461 kb on + strand, within MPMX20_03337 at 3511.462 kb on + strand, within MPMX20_03337 at 3511.597 kb on + strand, within MPMX20_03337 at 3511.597 kb on + strand, within MPMX20_03337 at 3511.597 kb on + strand, within MPMX20_03337 at 3511.636 kb on + strand, within MPMX20_03337 at 3511.677 kb on - strand at 3511.718 kb on - strand at 3511.736 kb on + strand at 3511.744 kb on - strand at 3511.744 kb on - strand at 3511.754 kb on - strand at 3511.754 kb on - strand at 3511.754 kb on - strand at 3511.755 kb on - strand at 3511.826 kb on + strand at 3511.842 kb on - strand at 3511.887 kb on + strand at 3511.895 kb on - strand at 3511.895 kb on - strand at 3511.922 kb on - strand at 3512.018 kb on - strand, within MPMX20_03338 at 3512.031 kb on + strand, within MPMX20_03338 at 3512.031 kb on + strand, within MPMX20_03338 at 3512.031 kb on + strand, within MPMX20_03338 at 3512.039 kb on - strand, within MPMX20_03338 at 3512.069 kb on + strand, within MPMX20_03338 at 3512.069 kb on + strand, within MPMX20_03338 at 3512.077 kb on - strand, within MPMX20_03338 at 3512.077 kb on - strand, within MPMX20_03338 at 3512.162 kb on + strand, within MPMX20_03338 at 3512.170 kb on - strand, within MPMX20_03338 at 3512.175 kb on + strand, within MPMX20_03338 at 3512.278 kb on + strand, within MPMX20_03338 at 3512.381 kb on + strand, within MPMX20_03338 at 3512.526 kb on - strand at 3512.545 kb on - strand at 3512.564 kb on + strand at 3512.613 kb on + strand at 3512.682 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parabanic Acid (C) remove 3,509,988 - MPMX20_03336 0.55 -3.1 3,510,046 - MPMX20_03336 0.58 +2.4 3,510,227 - MPMX20_03336 0.67 -1.1 3,510,262 - MPMX20_03336 0.69 +1.1 3,510,271 + MPMX20_03336 0.69 -0.1 3,510,306 - MPMX20_03336 0.71 -0.8 3,510,414 - MPMX20_03336 0.76 +2.3 3,510,536 - MPMX20_03336 0.82 -2.0 3,510,568 - MPMX20_03336 0.84 +0.5 3,510,744 + +0.3 3,510,772 + -1.5 3,510,777 + +1.3 3,510,777 + -2.3 3,510,777 + +0.1 3,510,777 + -1.3 3,510,779 + +1.0 3,510,785 - -1.0 3,510,787 - -2.2 3,510,787 - -1.0 3,510,890 - -2.9 3,510,897 - +2.0 3,510,901 + +0.0 3,510,901 + -1.0 3,510,901 + -0.4 3,510,901 + +0.6 3,510,901 + -0.4 3,510,909 - -1.5 3,510,909 - +0.6 3,510,909 - +0.7 3,510,909 - -0.3 3,510,909 - -1.9 3,510,909 - +0.7 3,510,909 - -2.5 3,510,909 - +0.4 3,510,956 - +0.7 3,510,974 + MPMX20_03337 0.11 +0.3 3,510,974 + MPMX20_03337 0.11 -0.4 3,510,974 + MPMX20_03337 0.11 +0.8 3,510,974 + MPMX20_03337 0.11 -2.1 3,511,048 - MPMX20_03337 0.19 +0.4 3,511,057 + MPMX20_03337 0.20 -0.6 3,511,170 - MPMX20_03337 0.33 -1.4 3,511,213 - MPMX20_03337 0.38 -1.1 3,511,233 + MPMX20_03337 0.40 -1.5 3,511,340 + MPMX20_03337 0.53 +0.2 3,511,340 + MPMX20_03337 0.53 -0.3 3,511,346 - MPMX20_03337 0.53 +0.8 3,511,348 - MPMX20_03337 0.54 -3.7 3,511,356 - MPMX20_03337 0.54 -0.2 3,511,407 + MPMX20_03337 0.60 +5.1 3,511,435 - MPMX20_03337 0.64 +0.1 3,511,461 + MPMX20_03337 0.67 +1.0 3,511,462 + MPMX20_03337 0.67 -0.8 3,511,597 + MPMX20_03337 0.82 -0.8 3,511,597 + MPMX20_03337 0.82 -2.5 3,511,597 + MPMX20_03337 0.82 -3.3 3,511,636 + MPMX20_03337 0.87 -4.0 3,511,677 - +0.9 3,511,718 - -1.5 3,511,736 + -2.8 3,511,744 - -3.2 3,511,744 - -0.4 3,511,754 - +0.7 3,511,754 - -1.3 3,511,754 - -3.9 3,511,755 - -0.7 3,511,826 + -2.8 3,511,842 - -0.3 3,511,887 + -1.0 3,511,895 - -0.9 3,511,895 - -1.2 3,511,922 - -2.1 3,512,018 - MPMX20_03338 0.21 -2.7 3,512,031 + MPMX20_03338 0.22 -3.0 3,512,031 + MPMX20_03338 0.22 -2.4 3,512,031 + MPMX20_03338 0.22 -3.2 3,512,039 - MPMX20_03338 0.24 +0.0 3,512,069 + MPMX20_03338 0.28 -3.0 3,512,069 + MPMX20_03338 0.28 -2.8 3,512,077 - MPMX20_03338 0.29 -3.3 3,512,077 - MPMX20_03338 0.29 +0.1 3,512,162 + MPMX20_03338 0.41 -2.0 3,512,170 - MPMX20_03338 0.42 -2.7 3,512,175 + MPMX20_03338 0.43 +2.3 3,512,278 + MPMX20_03338 0.57 -3.5 3,512,381 + MPMX20_03338 0.71 +0.9 3,512,526 - -1.9 3,512,545 - -3.2 3,512,564 + -2.9 3,512,613 + -3.1 3,512,682 - +2.6
Or see this region's nucleotide sequence