Experiment: Parabanic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02569 and MPMX20_02570 are separated by 140 nucleotides MPMX20_02570 and MPMX20_02571 are separated by 334 nucleotides MPMX20_02571 and MPMX20_02572 are separated by 282 nucleotides MPMX20_02572 and MPMX20_02573 are separated by 25 nucleotides
MPMX20_02569: MPMX20_02569 - Putative sulfur carrier protein YedF, at 2,708,095 to 2,708,328
_02569
MPMX20_02570: MPMX20_02570 - Universal stress protein F, at 2,708,469 to 2,708,903
_02570
MPMX20_02571: MPMX20_02571 - Outer membrane protein W, at 2,709,238 to 2,709,870
_02571
MPMX20_02572: MPMX20_02572 - hypothetical protein, at 2,710,153 to 2,710,557
_02572
MPMX20_02573: MPMX20_02573 - hypothetical protein, at 2,710,583 to 2,711,326
_02573
Position (kb)
2709
2710 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2708.265 kb on + strand, within MPMX20_02569 at 2708.273 kb on - strand, within MPMX20_02569 at 2708.273 kb on - strand, within MPMX20_02569 at 2708.275 kb on + strand, within MPMX20_02569 at 2708.283 kb on - strand, within MPMX20_02569 at 2708.351 kb on - strand at 2708.353 kb on - strand at 2708.363 kb on - strand at 2708.410 kb on + strand at 2708.526 kb on - strand, within MPMX20_02570 at 2708.533 kb on - strand, within MPMX20_02570 at 2708.536 kb on + strand, within MPMX20_02570 at 2708.538 kb on + strand, within MPMX20_02570 at 2708.538 kb on + strand, within MPMX20_02570 at 2708.538 kb on + strand, within MPMX20_02570 at 2708.619 kb on + strand, within MPMX20_02570 at 2708.619 kb on + strand, within MPMX20_02570 at 2708.619 kb on + strand, within MPMX20_02570 at 2708.624 kb on + strand, within MPMX20_02570 at 2708.624 kb on + strand, within MPMX20_02570 at 2708.627 kb on - strand, within MPMX20_02570 at 2708.627 kb on - strand, within MPMX20_02570 at 2708.627 kb on - strand, within MPMX20_02570 at 2708.632 kb on - strand, within MPMX20_02570 at 2708.692 kb on + strand, within MPMX20_02570 at 2708.692 kb on + strand, within MPMX20_02570 at 2708.710 kb on - strand, within MPMX20_02570 at 2708.710 kb on - strand, within MPMX20_02570 at 2708.710 kb on - strand, within MPMX20_02570 at 2708.723 kb on + strand, within MPMX20_02570 at 2708.724 kb on + strand, within MPMX20_02570 at 2708.783 kb on + strand, within MPMX20_02570 at 2708.788 kb on + strand, within MPMX20_02570 at 2708.796 kb on - strand, within MPMX20_02570 at 2708.836 kb on + strand, within MPMX20_02570 at 2708.846 kb on + strand, within MPMX20_02570 at 2708.897 kb on + strand at 2708.925 kb on + strand at 2708.962 kb on + strand at 2708.962 kb on + strand at 2708.962 kb on + strand at 2708.967 kb on + strand at 2708.968 kb on - strand at 2708.970 kb on - strand at 2708.975 kb on - strand at 2708.976 kb on - strand at 2709.003 kb on + strand at 2709.003 kb on + strand at 2709.061 kb on + strand at 2709.071 kb on + strand at 2709.077 kb on + strand at 2709.079 kb on - strand at 2709.082 kb on + strand at 2709.082 kb on + strand at 2709.090 kb on - strand at 2709.146 kb on - strand at 2709.153 kb on + strand at 2709.156 kb on - strand at 2709.165 kb on + strand at 2709.189 kb on - strand at 2709.197 kb on + strand at 2709.197 kb on + strand at 2709.197 kb on + strand at 2709.197 kb on + strand at 2709.197 kb on + strand at 2709.197 kb on + strand at 2709.197 kb on + strand at 2709.205 kb on - strand at 2709.205 kb on - strand at 2709.207 kb on + strand at 2709.208 kb on + strand at 2709.213 kb on + strand at 2709.213 kb on + strand at 2709.215 kb on - strand at 2709.216 kb on - strand at 2709.216 kb on - strand at 2709.221 kb on - strand at 2709.221 kb on - strand at 2709.222 kb on + strand at 2709.223 kb on + strand at 2709.230 kb on - strand at 2709.230 kb on - strand at 2709.231 kb on - strand at 2709.385 kb on - strand, within MPMX20_02571 at 2709.418 kb on + strand, within MPMX20_02571 at 2709.424 kb on - strand, within MPMX20_02571 at 2709.434 kb on - strand, within MPMX20_02571 at 2709.497 kb on - strand, within MPMX20_02571 at 2709.499 kb on + strand, within MPMX20_02571 at 2709.507 kb on - strand, within MPMX20_02571 at 2709.507 kb on - strand, within MPMX20_02571 at 2709.507 kb on - strand, within MPMX20_02571 at 2709.535 kb on - strand, within MPMX20_02571 at 2709.535 kb on - strand, within MPMX20_02571 at 2709.535 kb on - strand, within MPMX20_02571 at 2709.536 kb on - strand, within MPMX20_02571 at 2709.556 kb on - strand, within MPMX20_02571 at 2709.556 kb on - strand, within MPMX20_02571 at 2709.609 kb on + strand, within MPMX20_02571 at 2709.610 kb on + strand, within MPMX20_02571 at 2709.617 kb on - strand, within MPMX20_02571 at 2709.617 kb on - strand, within MPMX20_02571 at 2709.644 kb on + strand, within MPMX20_02571 at 2709.644 kb on + strand, within MPMX20_02571 at 2709.667 kb on - strand, within MPMX20_02571 at 2709.688 kb on + strand, within MPMX20_02571 at 2709.696 kb on - strand, within MPMX20_02571 at 2709.696 kb on - strand, within MPMX20_02571 at 2709.702 kb on + strand, within MPMX20_02571 at 2709.702 kb on + strand, within MPMX20_02571 at 2709.710 kb on - strand, within MPMX20_02571 at 2709.710 kb on - strand, within MPMX20_02571 at 2709.717 kb on + strand, within MPMX20_02571 at 2709.717 kb on + strand, within MPMX20_02571 at 2709.717 kb on + strand, within MPMX20_02571 at 2709.741 kb on - strand, within MPMX20_02571 at 2709.758 kb on + strand, within MPMX20_02571 at 2709.764 kb on - strand, within MPMX20_02571 at 2709.843 kb on - strand at 2709.843 kb on - strand at 2709.891 kb on - strand at 2709.911 kb on - strand at 2710.011 kb on - strand at 2710.011 kb on - strand at 2710.017 kb on + strand at 2710.025 kb on - strand at 2710.081 kb on - strand at 2710.081 kb on - strand at 2710.081 kb on - strand at 2710.096 kb on + strand at 2710.104 kb on - strand at 2710.155 kb on + strand at 2710.168 kb on - strand at 2710.218 kb on - strand, within MPMX20_02572 at 2710.222 kb on + strand, within MPMX20_02572 at 2710.230 kb on - strand, within MPMX20_02572 at 2710.272 kb on + strand, within MPMX20_02572 at 2710.390 kb on - strand, within MPMX20_02572 at 2710.427 kb on - strand, within MPMX20_02572 at 2710.428 kb on + strand, within MPMX20_02572 at 2710.428 kb on + strand, within MPMX20_02572 at 2710.432 kb on + strand, within MPMX20_02572 at 2710.440 kb on + strand, within MPMX20_02572 at 2710.520 kb on + strand at 2710.525 kb on + strand at 2710.525 kb on + strand at 2710.525 kb on + strand at 2710.525 kb on + strand at 2710.525 kb on + strand at 2710.525 kb on + strand at 2710.533 kb on - strand at 2710.533 kb on - strand at 2710.535 kb on + strand at 2710.535 kb on - strand at 2710.543 kb on - strand at 2710.577 kb on - strand at 2710.579 kb on + strand at 2710.579 kb on + strand at 2710.599 kb on + strand at 2710.639 kb on + strand at 2710.639 kb on + strand at 2710.666 kb on + strand, within MPMX20_02573 at 2710.678 kb on + strand, within MPMX20_02573 at 2710.678 kb on + strand, within MPMX20_02573 at 2710.686 kb on - strand, within MPMX20_02573 at 2710.688 kb on + strand, within MPMX20_02573 at 2710.739 kb on - strand, within MPMX20_02573 at 2710.769 kb on - strand, within MPMX20_02573 at 2710.769 kb on - strand, within MPMX20_02573 at 2710.804 kb on + strand, within MPMX20_02573 at 2710.832 kb on + strand, within MPMX20_02573
Per-strain Table
Position Strand Gene LocusTag Fraction Parabanic Acid (C) remove 2,708,265 + MPMX20_02569 0.73 +2.2 2,708,273 - MPMX20_02569 0.76 -2.3 2,708,273 - MPMX20_02569 0.76 -3.0 2,708,275 + MPMX20_02569 0.77 +1.0 2,708,283 - MPMX20_02569 0.80 -1.1 2,708,351 - +2.2 2,708,353 - +0.0 2,708,363 - +0.7 2,708,410 + +0.1 2,708,526 - MPMX20_02570 0.13 -0.5 2,708,533 - MPMX20_02570 0.15 -0.6 2,708,536 + MPMX20_02570 0.15 -3.1 2,708,538 + MPMX20_02570 0.16 -2.7 2,708,538 + MPMX20_02570 0.16 +0.7 2,708,538 + MPMX20_02570 0.16 -2.1 2,708,619 + MPMX20_02570 0.34 -2.8 2,708,619 + MPMX20_02570 0.34 -3.0 2,708,619 + MPMX20_02570 0.34 +0.6 2,708,624 + MPMX20_02570 0.36 -0.5 2,708,624 + MPMX20_02570 0.36 +1.6 2,708,627 - MPMX20_02570 0.36 -3.3 2,708,627 - MPMX20_02570 0.36 -0.3 2,708,627 - MPMX20_02570 0.36 -0.2 2,708,632 - MPMX20_02570 0.37 +0.0 2,708,692 + MPMX20_02570 0.51 +1.3 2,708,692 + MPMX20_02570 0.51 +0.5 2,708,710 - MPMX20_02570 0.55 -0.9 2,708,710 - MPMX20_02570 0.55 +0.0 2,708,710 - MPMX20_02570 0.55 -1.1 2,708,723 + MPMX20_02570 0.58 +1.6 2,708,724 + MPMX20_02570 0.59 +1.0 2,708,783 + MPMX20_02570 0.72 +2.1 2,708,788 + MPMX20_02570 0.73 +0.6 2,708,796 - MPMX20_02570 0.75 -3.1 2,708,836 + MPMX20_02570 0.84 +0.1 2,708,846 + MPMX20_02570 0.87 +3.0 2,708,897 + +1.4 2,708,925 + -0.5 2,708,962 + -3.1 2,708,962 + -3.2 2,708,962 + -2.7 2,708,967 + -3.6 2,708,968 - -1.9 2,708,970 - -1.1 2,708,975 - +0.2 2,708,976 - -1.8 2,709,003 + +1.3 2,709,003 + -0.5 2,709,061 + +2.0 2,709,071 + -2.4 2,709,077 + -1.7 2,709,079 - +0.9 2,709,082 + +0.3 2,709,082 + -0.9 2,709,090 - -2.8 2,709,146 - -1.9 2,709,153 + +0.2 2,709,156 - -0.2 2,709,165 + +0.8 2,709,189 - +2.0 2,709,197 + +2.5 2,709,197 + +0.9 2,709,197 + +0.5 2,709,197 + +2.5 2,709,197 + -2.6 2,709,197 + +0.1 2,709,197 + -0.3 2,709,205 - +1.6 2,709,205 - -0.5 2,709,207 + -3.3 2,709,208 + -3.1 2,709,213 + -3.1 2,709,213 + +0.6 2,709,215 - +1.3 2,709,216 - +0.9 2,709,216 - -2.9 2,709,221 - -0.3 2,709,221 - -4.0 2,709,222 + -1.9 2,709,223 + -0.8 2,709,230 - -1.4 2,709,230 - +0.7 2,709,231 - +0.8 2,709,385 - MPMX20_02571 0.23 +0.7 2,709,418 + MPMX20_02571 0.28 -0.9 2,709,424 - MPMX20_02571 0.29 -2.9 2,709,434 - MPMX20_02571 0.31 +1.0 2,709,497 - MPMX20_02571 0.41 -4.0 2,709,499 + MPMX20_02571 0.41 -2.9 2,709,507 - MPMX20_02571 0.42 -2.1 2,709,507 - MPMX20_02571 0.42 -1.6 2,709,507 - MPMX20_02571 0.42 -1.1 2,709,535 - MPMX20_02571 0.47 +0.6 2,709,535 - MPMX20_02571 0.47 -0.6 2,709,535 - MPMX20_02571 0.47 -3.6 2,709,536 - MPMX20_02571 0.47 -0.0 2,709,556 - MPMX20_02571 0.50 -3.2 2,709,556 - MPMX20_02571 0.50 -2.0 2,709,609 + MPMX20_02571 0.59 -2.3 2,709,610 + MPMX20_02571 0.59 -3.5 2,709,617 - MPMX20_02571 0.60 -3.7 2,709,617 - MPMX20_02571 0.60 -4.0 2,709,644 + MPMX20_02571 0.64 -2.3 2,709,644 + MPMX20_02571 0.64 -1.3 2,709,667 - MPMX20_02571 0.68 +1.4 2,709,688 + MPMX20_02571 0.71 -0.6 2,709,696 - MPMX20_02571 0.72 -4.4 2,709,696 - MPMX20_02571 0.72 -0.2 2,709,702 + MPMX20_02571 0.73 -2.6 2,709,702 + MPMX20_02571 0.73 +0.5 2,709,710 - MPMX20_02571 0.75 +0.6 2,709,710 - MPMX20_02571 0.75 -0.3 2,709,717 + MPMX20_02571 0.76 +0.5 2,709,717 + MPMX20_02571 0.76 -0.8 2,709,717 + MPMX20_02571 0.76 -3.5 2,709,741 - MPMX20_02571 0.79 -2.1 2,709,758 + MPMX20_02571 0.82 -2.3 2,709,764 - MPMX20_02571 0.83 -2.1 2,709,843 - -0.2 2,709,843 - -1.9 2,709,891 - +0.5 2,709,911 - +1.5 2,710,011 - -1.3 2,710,011 - -1.0 2,710,017 + -0.7 2,710,025 - -0.7 2,710,081 - +1.0 2,710,081 - +0.5 2,710,081 - -3.5 2,710,096 + -0.8 2,710,104 - -0.4 2,710,155 + +0.8 2,710,168 - +1.5 2,710,218 - MPMX20_02572 0.16 -1.3 2,710,222 + MPMX20_02572 0.17 -4.1 2,710,230 - MPMX20_02572 0.19 -0.8 2,710,272 + MPMX20_02572 0.29 +0.7 2,710,390 - MPMX20_02572 0.59 -0.2 2,710,427 - MPMX20_02572 0.68 +2.9 2,710,428 + MPMX20_02572 0.68 +1.5 2,710,428 + MPMX20_02572 0.68 -2.1 2,710,432 + MPMX20_02572 0.69 +0.9 2,710,440 + MPMX20_02572 0.71 -0.3 2,710,520 + +0.2 2,710,525 + +1.8 2,710,525 + +0.4 2,710,525 + +1.4 2,710,525 + +0.2 2,710,525 + -0.9 2,710,525 + +0.1 2,710,533 - -1.4 2,710,533 - +0.4 2,710,535 + -3.1 2,710,535 - -1.9 2,710,543 - -0.5 2,710,577 - -0.9 2,710,579 + +0.6 2,710,579 + -1.6 2,710,599 + -1.3 2,710,639 + -1.5 2,710,639 + -2.6 2,710,666 + MPMX20_02573 0.11 -0.1 2,710,678 + MPMX20_02573 0.13 -2.8 2,710,678 + MPMX20_02573 0.13 -1.9 2,710,686 - MPMX20_02573 0.14 -0.5 2,710,688 + MPMX20_02573 0.14 -1.4 2,710,739 - MPMX20_02573 0.21 +1.7 2,710,769 - MPMX20_02573 0.25 -2.7 2,710,769 - MPMX20_02573 0.25 -2.4 2,710,804 + MPMX20_02573 0.30 -2.0 2,710,832 + MPMX20_02573 0.33 +0.8
Or see this region's nucleotide sequence