Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00613

Experiment: Parabanic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00612 and MPMX20_00613 are separated by 102 nucleotidesMPMX20_00613 and MPMX20_00614 overlap by 14 nucleotidesMPMX20_00614 and MPMX20_00615 are separated by 100 nucleotides MPMX20_00612: MPMX20_00612 - HTH-type transcriptional regulatory protein GabR, at 638,176 to 639,564 _00612 MPMX20_00613: MPMX20_00613 - hypothetical protein, at 639,667 to 640,146 _00613 MPMX20_00614: MPMX20_00614 - HTH-type transcriptional regulator PgrR, at 640,133 to 641,035 _00614 MPMX20_00615: MPMX20_00615 - Putative aldehyde dehydrogenase, at 641,136 to 642,551 _00615 Position (kb) 639 640 641Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 638.721 kb on - strand, within MPMX20_00612at 638.773 kb on - strand, within MPMX20_00612at 638.775 kb on + strand, within MPMX20_00612at 638.789 kb on - strand, within MPMX20_00612at 638.791 kb on + strand, within MPMX20_00612at 638.791 kb on + strand, within MPMX20_00612at 638.802 kb on + strand, within MPMX20_00612at 638.822 kb on - strand, within MPMX20_00612at 638.941 kb on - strand, within MPMX20_00612at 638.943 kb on - strand, within MPMX20_00612at 638.960 kb on + strand, within MPMX20_00612at 639.053 kb on - strand, within MPMX20_00612at 639.078 kb on + strand, within MPMX20_00612at 639.084 kb on - strand, within MPMX20_00612at 639.094 kb on - strand, within MPMX20_00612at 639.262 kb on + strand, within MPMX20_00612at 639.262 kb on + strand, within MPMX20_00612at 639.298 kb on + strand, within MPMX20_00612at 639.324 kb on + strand, within MPMX20_00612at 639.331 kb on + strand, within MPMX20_00612at 639.332 kb on - strand, within MPMX20_00612at 639.354 kb on + strand, within MPMX20_00612at 639.362 kb on - strand, within MPMX20_00612at 639.362 kb on - strand, within MPMX20_00612at 639.362 kb on - strand, within MPMX20_00612at 639.381 kb on + strand, within MPMX20_00612at 639.408 kb on - strand, within MPMX20_00612at 639.408 kb on - strand, within MPMX20_00612at 639.449 kb on + strandat 639.449 kb on + strandat 639.449 kb on + strandat 639.457 kb on - strandat 639.535 kb on + strandat 639.543 kb on - strandat 639.543 kb on - strandat 639.604 kb on + strandat 639.633 kb on + strandat 639.701 kb on - strandat 639.701 kb on - strandat 639.706 kb on - strandat 639.720 kb on + strand, within MPMX20_00613at 639.726 kb on + strand, within MPMX20_00613at 639.806 kb on + strand, within MPMX20_00613at 639.826 kb on - strand, within MPMX20_00613at 639.830 kb on + strand, within MPMX20_00613at 639.830 kb on - strand, within MPMX20_00613at 639.876 kb on - strand, within MPMX20_00613at 639.936 kb on - strand, within MPMX20_00613at 639.936 kb on - strand, within MPMX20_00613at 639.995 kb on - strand, within MPMX20_00613at 640.000 kb on + strand, within MPMX20_00613at 640.003 kb on - strand, within MPMX20_00613at 640.033 kb on - strand, within MPMX20_00613at 640.060 kb on + strand, within MPMX20_00613at 640.114 kb on + strandat 640.133 kb on - strandat 640.212 kb on - strandat 640.212 kb on - strandat 640.262 kb on + strand, within MPMX20_00614at 640.262 kb on + strand, within MPMX20_00614at 640.392 kb on - strand, within MPMX20_00614at 640.425 kb on - strand, within MPMX20_00614at 640.439 kb on - strand, within MPMX20_00614at 640.486 kb on - strand, within MPMX20_00614at 640.530 kb on + strand, within MPMX20_00614at 640.730 kb on - strand, within MPMX20_00614at 640.737 kb on - strand, within MPMX20_00614at 640.754 kb on + strand, within MPMX20_00614at 640.770 kb on + strand, within MPMX20_00614at 640.793 kb on + strand, within MPMX20_00614at 640.813 kb on + strand, within MPMX20_00614at 640.833 kb on + strand, within MPMX20_00614at 640.838 kb on + strand, within MPMX20_00614at 640.841 kb on - strand, within MPMX20_00614at 640.858 kb on + strand, within MPMX20_00614at 640.866 kb on - strand, within MPMX20_00614at 640.894 kb on + strand, within MPMX20_00614at 640.968 kb on - strandat 640.995 kb on + strandat 641.005 kb on + strandat 641.028 kb on - strandat 641.107 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parabanic Acid (C)
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638,721 - MPMX20_00612 0.39 -2.3
638,773 - MPMX20_00612 0.43 -1.8
638,775 + MPMX20_00612 0.43 -0.5
638,789 - MPMX20_00612 0.44 -0.9
638,791 + MPMX20_00612 0.44 -1.7
638,791 + MPMX20_00612 0.44 +0.8
638,802 + MPMX20_00612 0.45 -0.1
638,822 - MPMX20_00612 0.47 +0.7
638,941 - MPMX20_00612 0.55 +1.2
638,943 - MPMX20_00612 0.55 +1.4
638,960 + MPMX20_00612 0.56 +2.0
639,053 - MPMX20_00612 0.63 -1.6
639,078 + MPMX20_00612 0.65 +1.7
639,084 - MPMX20_00612 0.65 -2.6
639,094 - MPMX20_00612 0.66 +0.5
639,262 + MPMX20_00612 0.78 -3.1
639,262 + MPMX20_00612 0.78 +0.2
639,298 + MPMX20_00612 0.81 -3.4
639,324 + MPMX20_00612 0.83 +1.6
639,331 + MPMX20_00612 0.83 -0.7
639,332 - MPMX20_00612 0.83 -1.1
639,354 + MPMX20_00612 0.85 +0.6
639,362 - MPMX20_00612 0.85 +0.8
639,362 - MPMX20_00612 0.85 +1.4
639,362 - MPMX20_00612 0.85 -2.2
639,381 + MPMX20_00612 0.87 +3.4
639,408 - MPMX20_00612 0.89 +2.3
639,408 - MPMX20_00612 0.89 -1.5
639,449 + +0.3
639,449 + +0.5
639,449 + +0.5
639,457 - -0.5
639,535 + -0.3
639,543 - -0.6
639,543 - -1.0
639,604 + +0.6
639,633 + -3.1
639,701 - +0.4
639,701 - -2.6
639,706 - +0.5
639,720 + MPMX20_00613 0.11 +2.4
639,726 + MPMX20_00613 0.12 +1.5
639,806 + MPMX20_00613 0.29 +1.5
639,826 - MPMX20_00613 0.33 +1.5
639,830 + MPMX20_00613 0.34 -1.7
639,830 - MPMX20_00613 0.34 +0.9
639,876 - MPMX20_00613 0.44 +0.4
639,936 - MPMX20_00613 0.56 +1.6
639,936 - MPMX20_00613 0.56 +0.7
639,995 - MPMX20_00613 0.68 +0.3
640,000 + MPMX20_00613 0.69 +1.1
640,003 - MPMX20_00613 0.70 +0.4
640,033 - MPMX20_00613 0.76 -2.8
640,060 + MPMX20_00613 0.82 +0.9
640,114 + -0.9
640,133 - -2.4
640,212 - +1.0
640,212 - +0.7
640,262 + MPMX20_00614 0.14 -1.7
640,262 + MPMX20_00614 0.14 +2.7
640,392 - MPMX20_00614 0.29 +1.2
640,425 - MPMX20_00614 0.32 +1.2
640,439 - MPMX20_00614 0.34 -3.4
640,486 - MPMX20_00614 0.39 +0.8
640,530 + MPMX20_00614 0.44 -0.1
640,730 - MPMX20_00614 0.66 -3.4
640,737 - MPMX20_00614 0.67 -1.7
640,754 + MPMX20_00614 0.69 +0.4
640,770 + MPMX20_00614 0.71 +2.0
640,793 + MPMX20_00614 0.73 -1.4
640,813 + MPMX20_00614 0.75 +0.8
640,833 + MPMX20_00614 0.78 +0.8
640,838 + MPMX20_00614 0.78 +1.4
640,841 - MPMX20_00614 0.78 -1.5
640,858 + MPMX20_00614 0.80 +2.1
640,866 - MPMX20_00614 0.81 -1.9
640,894 + MPMX20_00614 0.84 +1.1
640,968 - +2.0
640,995 + -1.2
641,005 + -1.8
641,028 - +1.9
641,107 - +1.4

Or see this region's nucleotide sequence