Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04423 and MPMX20_04424 are separated by 45 nucleotides MPMX20_04424 and MPMX20_04425 are separated by 6 nucleotides MPMX20_04425 and MPMX20_04426 overlap by 4 nucleotides
MPMX20_04423: MPMX20_04423 - Cellulose biosynthesis protein BcsG, at 4,623,526 to 4,625,205
_04423
MPMX20_04424: MPMX20_04424 - Endoglucanase, at 4,625,251 to 4,626,246
_04424
MPMX20_04425: MPMX20_04425 - Bifunctional ligase/repressor BirA, at 4,626,253 to 4,627,215
_04425
MPMX20_04426: MPMX20_04426 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 4,627,212 to 4,628,240
_04426
Position (kb)
4625
4626
4627 Strain fitness (log2 ratio)
-2
-1
0
1 at 4624.260 kb on + strand, within MPMX20_04423 at 4624.260 kb on + strand, within MPMX20_04423 at 4624.260 kb on + strand, within MPMX20_04423 at 4624.293 kb on - strand, within MPMX20_04423 at 4624.307 kb on + strand, within MPMX20_04423 at 4624.335 kb on + strand, within MPMX20_04423 at 4624.341 kb on - strand, within MPMX20_04423 at 4624.343 kb on - strand, within MPMX20_04423 at 4624.343 kb on - strand, within MPMX20_04423 at 4624.358 kb on - strand, within MPMX20_04423 at 4624.419 kb on + strand, within MPMX20_04423 at 4624.518 kb on + strand, within MPMX20_04423 at 4624.636 kb on + strand, within MPMX20_04423 at 4624.644 kb on - strand, within MPMX20_04423 at 4624.647 kb on + strand, within MPMX20_04423 at 4624.682 kb on + strand, within MPMX20_04423 at 4624.682 kb on + strand, within MPMX20_04423 at 4624.690 kb on - strand, within MPMX20_04423 at 4624.690 kb on - strand, within MPMX20_04423 at 4624.725 kb on + strand, within MPMX20_04423 at 4624.725 kb on - strand, within MPMX20_04423 at 4624.877 kb on + strand, within MPMX20_04423 at 4624.884 kb on + strand, within MPMX20_04423 at 4624.885 kb on - strand, within MPMX20_04423 at 4624.886 kb on + strand, within MPMX20_04423 at 4624.892 kb on - strand, within MPMX20_04423 at 4624.892 kb on - strand, within MPMX20_04423 at 4624.899 kb on - strand, within MPMX20_04423 at 4624.966 kb on + strand, within MPMX20_04423 at 4624.966 kb on + strand, within MPMX20_04423 at 4624.974 kb on - strand, within MPMX20_04423 at 4625.095 kb on - strand at 4625.095 kb on - strand at 4625.095 kb on - strand at 4625.223 kb on + strand at 4625.223 kb on + strand at 4625.231 kb on - strand at 4625.268 kb on + strand at 4625.325 kb on - strand at 4625.330 kb on + strand at 4625.438 kb on + strand, within MPMX20_04424 at 4625.485 kb on + strand, within MPMX20_04424 at 4625.495 kb on + strand, within MPMX20_04424 at 4625.495 kb on + strand, within MPMX20_04424 at 4625.495 kb on + strand, within MPMX20_04424 at 4625.495 kb on + strand, within MPMX20_04424 at 4625.503 kb on - strand, within MPMX20_04424 at 4625.503 kb on - strand, within MPMX20_04424 at 4625.551 kb on + strand, within MPMX20_04424 at 4625.551 kb on + strand, within MPMX20_04424 at 4625.674 kb on - strand, within MPMX20_04424 at 4625.769 kb on - strand, within MPMX20_04424 at 4625.857 kb on - strand, within MPMX20_04424 at 4625.882 kb on + strand, within MPMX20_04424 at 4625.890 kb on - strand, within MPMX20_04424 at 4625.890 kb on - strand, within MPMX20_04424 at 4625.900 kb on - strand, within MPMX20_04424 at 4625.960 kb on + strand, within MPMX20_04424 at 4625.969 kb on - strand, within MPMX20_04424 at 4626.058 kb on - strand, within MPMX20_04424 at 4626.079 kb on + strand, within MPMX20_04424 at 4626.138 kb on + strand, within MPMX20_04424 at 4626.169 kb on + strand at 4626.169 kb on + strand at 4626.169 kb on + strand at 4626.177 kb on - strand at 4626.199 kb on + strand at 4626.225 kb on - strand at 4626.237 kb on - strand at 4627.202 kb on + strand at 4627.202 kb on + strand at 4627.210 kb on - strand at 4627.223 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,624,260 + MPMX20_04423 0.44 +0.2 4,624,260 + MPMX20_04423 0.44 -1.3 4,624,260 + MPMX20_04423 0.44 +0.6 4,624,293 - MPMX20_04423 0.46 +0.1 4,624,307 + MPMX20_04423 0.46 -1.5 4,624,335 + MPMX20_04423 0.48 +0.1 4,624,341 - MPMX20_04423 0.49 -1.4 4,624,343 - MPMX20_04423 0.49 +0.6 4,624,343 - MPMX20_04423 0.49 +0.6 4,624,358 - MPMX20_04423 0.50 +1.1 4,624,419 + MPMX20_04423 0.53 +0.9 4,624,518 + MPMX20_04423 0.59 -0.9 4,624,636 + MPMX20_04423 0.66 -0.0 4,624,644 - MPMX20_04423 0.67 -0.2 4,624,647 + MPMX20_04423 0.67 +0.8 4,624,682 + MPMX20_04423 0.69 +0.5 4,624,682 + MPMX20_04423 0.69 +0.7 4,624,690 - MPMX20_04423 0.69 -0.7 4,624,690 - MPMX20_04423 0.69 -0.5 4,624,725 + MPMX20_04423 0.71 -0.1 4,624,725 - MPMX20_04423 0.71 +0.1 4,624,877 + MPMX20_04423 0.80 -0.7 4,624,884 + MPMX20_04423 0.81 +0.8 4,624,885 - MPMX20_04423 0.81 +0.3 4,624,886 + MPMX20_04423 0.81 -0.3 4,624,892 - MPMX20_04423 0.81 +0.4 4,624,892 - MPMX20_04423 0.81 -2.1 4,624,899 - MPMX20_04423 0.82 +0.2 4,624,966 + MPMX20_04423 0.86 +1.7 4,624,966 + MPMX20_04423 0.86 -0.8 4,624,974 - MPMX20_04423 0.86 -0.3 4,625,095 - +0.0 4,625,095 - +0.2 4,625,095 - +1.4 4,625,223 + +0.9 4,625,223 + -1.3 4,625,231 - -0.2 4,625,268 + -0.9 4,625,325 - +1.1 4,625,330 + -0.4 4,625,438 + MPMX20_04424 0.19 -0.0 4,625,485 + MPMX20_04424 0.23 +0.3 4,625,495 + MPMX20_04424 0.24 +0.5 4,625,495 + MPMX20_04424 0.24 +0.2 4,625,495 + MPMX20_04424 0.24 -0.1 4,625,495 + MPMX20_04424 0.24 -0.1 4,625,503 - MPMX20_04424 0.25 -1.4 4,625,503 - MPMX20_04424 0.25 +0.5 4,625,551 + MPMX20_04424 0.30 +1.0 4,625,551 + MPMX20_04424 0.30 +0.7 4,625,674 - MPMX20_04424 0.42 -0.6 4,625,769 - MPMX20_04424 0.52 -0.3 4,625,857 - MPMX20_04424 0.61 +1.1 4,625,882 + MPMX20_04424 0.63 +0.8 4,625,890 - MPMX20_04424 0.64 -1.4 4,625,890 - MPMX20_04424 0.64 -0.1 4,625,900 - MPMX20_04424 0.65 +0.7 4,625,960 + MPMX20_04424 0.71 +1.2 4,625,969 - MPMX20_04424 0.72 -1.5 4,626,058 - MPMX20_04424 0.81 +0.2 4,626,079 + MPMX20_04424 0.83 -1.0 4,626,138 + MPMX20_04424 0.89 +0.2 4,626,169 + -0.3 4,626,169 + +0.3 4,626,169 + -0.6 4,626,177 - -0.4 4,626,199 + +0.4 4,626,225 - +0.5 4,626,237 - -0.6 4,627,202 + +1.5 4,627,202 + -0.4 4,627,210 - +0.4 4,627,223 + +0.7
Or see this region's nucleotide sequence