Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01834 and MPMX20_01835 are separated by 99 nucleotides MPMX20_01835 and MPMX20_01836 overlap by 17 nucleotides MPMX20_01836 and MPMX20_01837 are separated by 145 nucleotides MPMX20_01837 and MPMX20_01838 are separated by 20 nucleotides
MPMX20_01834: MPMX20_01834 - 2-nitroimidazole transporter, at 1,928,010 to 1,929,197
_01834
MPMX20_01835: MPMX20_01835 - HTH-type transcriptional regulator NimR, at 1,929,297 to 1,930,088
_01835
MPMX20_01836: MPMX20_01836 - hypothetical protein, at 1,930,072 to 1,930,518
_01836
MPMX20_01837: MPMX20_01837 - hypothetical protein, at 1,930,664 to 1,930,768
_01837
MPMX20_01838: MPMX20_01838 - hypothetical protein, at 1,930,789 to 1,931,289
_01838
Position (kb)
1929
1930
1931 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1928.313 kb on + strand, within MPMX20_01834 at 1928.345 kb on + strand, within MPMX20_01834 at 1928.422 kb on + strand, within MPMX20_01834 at 1928.454 kb on + strand, within MPMX20_01834 at 1928.457 kb on - strand, within MPMX20_01834 at 1928.471 kb on + strand, within MPMX20_01834 at 1928.471 kb on + strand, within MPMX20_01834 at 1928.605 kb on - strand, within MPMX20_01834 at 1928.639 kb on + strand, within MPMX20_01834 at 1928.652 kb on - strand, within MPMX20_01834 at 1928.657 kb on - strand, within MPMX20_01834 at 1928.720 kb on - strand, within MPMX20_01834 at 1928.742 kb on + strand, within MPMX20_01834 at 1928.742 kb on + strand, within MPMX20_01834 at 1928.742 kb on + strand, within MPMX20_01834 at 1928.750 kb on - strand, within MPMX20_01834 at 1928.830 kb on + strand, within MPMX20_01834 at 1928.839 kb on + strand, within MPMX20_01834 at 1928.849 kb on + strand, within MPMX20_01834 at 1928.857 kb on - strand, within MPMX20_01834 at 1928.870 kb on + strand, within MPMX20_01834 at 1928.878 kb on - strand, within MPMX20_01834 at 1928.896 kb on + strand, within MPMX20_01834 at 1928.923 kb on - strand, within MPMX20_01834 at 1928.952 kb on - strand, within MPMX20_01834 at 1928.986 kb on - strand, within MPMX20_01834 at 1929.031 kb on + strand, within MPMX20_01834 at 1929.045 kb on + strand, within MPMX20_01834 at 1929.046 kb on + strand, within MPMX20_01834 at 1929.053 kb on - strand, within MPMX20_01834 at 1929.065 kb on - strand, within MPMX20_01834 at 1929.090 kb on + strand at 1929.095 kb on + strand at 1929.122 kb on + strand at 1929.122 kb on + strand at 1929.156 kb on - strand at 1929.209 kb on - strand at 1929.209 kb on - strand at 1929.209 kb on - strand at 1929.209 kb on - strand at 1929.248 kb on + strand at 1929.304 kb on + strand at 1929.434 kb on + strand, within MPMX20_01835 at 1929.465 kb on + strand, within MPMX20_01835 at 1929.541 kb on + strand, within MPMX20_01835 at 1929.612 kb on - strand, within MPMX20_01835 at 1929.693 kb on - strand, within MPMX20_01835 at 1929.747 kb on - strand, within MPMX20_01835 at 1929.799 kb on - strand, within MPMX20_01835 at 1929.842 kb on + strand, within MPMX20_01835 at 1929.962 kb on + strand, within MPMX20_01835 at 1929.998 kb on - strand, within MPMX20_01835 at 1930.041 kb on - strand at 1930.070 kb on + strand at 1930.098 kb on - strand at 1930.101 kb on + strand at 1930.143 kb on + strand, within MPMX20_01836 at 1930.196 kb on + strand, within MPMX20_01836 at 1930.206 kb on + strand, within MPMX20_01836 at 1930.285 kb on + strand, within MPMX20_01836 at 1930.294 kb on + strand, within MPMX20_01836 at 1930.302 kb on - strand, within MPMX20_01836 at 1930.363 kb on + strand, within MPMX20_01836 at 1930.389 kb on + strand, within MPMX20_01836 at 1930.405 kb on - strand, within MPMX20_01836 at 1930.498 kb on + strand at 1930.522 kb on - strand at 1930.537 kb on + strand at 1930.545 kb on - strand at 1930.590 kb on + strand at 1930.602 kb on + strand at 1930.602 kb on + strand at 1930.691 kb on + strand, within MPMX20_01837 at 1930.722 kb on + strand, within MPMX20_01837 at 1930.730 kb on - strand, within MPMX20_01837 at 1930.730 kb on - strand, within MPMX20_01837 at 1930.777 kb on - strand at 1930.812 kb on + strand at 1930.820 kb on - strand at 1930.915 kb on - strand, within MPMX20_01838 at 1931.027 kb on - strand, within MPMX20_01838 at 1931.057 kb on - strand, within MPMX20_01838
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 1,928,313 + MPMX20_01834 0.26 -1.2 1,928,345 + MPMX20_01834 0.28 +0.1 1,928,422 + MPMX20_01834 0.35 +0.2 1,928,454 + MPMX20_01834 0.37 -0.2 1,928,457 - MPMX20_01834 0.38 -1.0 1,928,471 + MPMX20_01834 0.39 +0.8 1,928,471 + MPMX20_01834 0.39 +0.2 1,928,605 - MPMX20_01834 0.50 +0.1 1,928,639 + MPMX20_01834 0.53 -0.1 1,928,652 - MPMX20_01834 0.54 +0.6 1,928,657 - MPMX20_01834 0.54 -0.7 1,928,720 - MPMX20_01834 0.60 +0.5 1,928,742 + MPMX20_01834 0.62 +2.4 1,928,742 + MPMX20_01834 0.62 -0.2 1,928,742 + MPMX20_01834 0.62 -0.2 1,928,750 - MPMX20_01834 0.62 +0.5 1,928,830 + MPMX20_01834 0.69 -0.1 1,928,839 + MPMX20_01834 0.70 +0.4 1,928,849 + MPMX20_01834 0.71 -0.3 1,928,857 - MPMX20_01834 0.71 -0.5 1,928,870 + MPMX20_01834 0.72 +0.1 1,928,878 - MPMX20_01834 0.73 -0.9 1,928,896 + MPMX20_01834 0.75 -0.5 1,928,923 - MPMX20_01834 0.77 -0.3 1,928,952 - MPMX20_01834 0.79 +0.8 1,928,986 - MPMX20_01834 0.82 +0.2 1,929,031 + MPMX20_01834 0.86 -0.2 1,929,045 + MPMX20_01834 0.87 -0.4 1,929,046 + MPMX20_01834 0.87 +0.4 1,929,053 - MPMX20_01834 0.88 -0.2 1,929,065 - MPMX20_01834 0.89 +0.4 1,929,090 + +0.0 1,929,095 + +0.5 1,929,122 + -0.6 1,929,122 + -0.5 1,929,156 - -0.7 1,929,209 - +1.0 1,929,209 - +2.0 1,929,209 - -0.5 1,929,209 - +0.4 1,929,248 + +1.1 1,929,304 + -0.6 1,929,434 + MPMX20_01835 0.17 +0.8 1,929,465 + MPMX20_01835 0.21 +0.2 1,929,541 + MPMX20_01835 0.31 -1.8 1,929,612 - MPMX20_01835 0.40 -0.5 1,929,693 - MPMX20_01835 0.50 -0.1 1,929,747 - MPMX20_01835 0.57 -0.2 1,929,799 - MPMX20_01835 0.63 +1.6 1,929,842 + MPMX20_01835 0.69 +0.2 1,929,962 + MPMX20_01835 0.84 +0.6 1,929,998 - MPMX20_01835 0.89 +0.6 1,930,041 - -0.3 1,930,070 + +1.8 1,930,098 - -0.3 1,930,101 + +0.1 1,930,143 + MPMX20_01836 0.16 +0.4 1,930,196 + MPMX20_01836 0.28 +0.5 1,930,206 + MPMX20_01836 0.30 -0.4 1,930,285 + MPMX20_01836 0.48 +0.4 1,930,294 + MPMX20_01836 0.50 -1.6 1,930,302 - MPMX20_01836 0.51 +1.0 1,930,363 + MPMX20_01836 0.65 -1.2 1,930,389 + MPMX20_01836 0.71 +1.2 1,930,405 - MPMX20_01836 0.74 -0.7 1,930,498 + +0.8 1,930,522 - +0.4 1,930,537 + +2.2 1,930,545 - -0.4 1,930,590 + +0.4 1,930,602 + -0.2 1,930,602 + -0.5 1,930,691 + MPMX20_01837 0.26 +0.7 1,930,722 + MPMX20_01837 0.55 +0.7 1,930,730 - MPMX20_01837 0.63 -0.1 1,930,730 - MPMX20_01837 0.63 -1.5 1,930,777 - +0.6 1,930,812 + -0.8 1,930,820 - -0.9 1,930,915 - MPMX20_01838 0.25 -1.1 1,931,027 - MPMX20_01838 0.48 +0.4 1,931,057 - MPMX20_01838 0.53 -0.7
Or see this region's nucleotide sequence