Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01835

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01834 and MPMX20_01835 are separated by 99 nucleotidesMPMX20_01835 and MPMX20_01836 overlap by 17 nucleotidesMPMX20_01836 and MPMX20_01837 are separated by 145 nucleotidesMPMX20_01837 and MPMX20_01838 are separated by 20 nucleotides MPMX20_01834: MPMX20_01834 - 2-nitroimidazole transporter, at 1,928,010 to 1,929,197 _01834 MPMX20_01835: MPMX20_01835 - HTH-type transcriptional regulator NimR, at 1,929,297 to 1,930,088 _01835 MPMX20_01836: MPMX20_01836 - hypothetical protein, at 1,930,072 to 1,930,518 _01836 MPMX20_01837: MPMX20_01837 - hypothetical protein, at 1,930,664 to 1,930,768 _01837 MPMX20_01838: MPMX20_01838 - hypothetical protein, at 1,930,789 to 1,931,289 _01838 Position (kb) 1929 1930 1931Strain fitness (log2 ratio) -2 -1 0 1 2at 1928.313 kb on + strand, within MPMX20_01834at 1928.345 kb on + strand, within MPMX20_01834at 1928.422 kb on + strand, within MPMX20_01834at 1928.454 kb on + strand, within MPMX20_01834at 1928.457 kb on - strand, within MPMX20_01834at 1928.471 kb on + strand, within MPMX20_01834at 1928.471 kb on + strand, within MPMX20_01834at 1928.605 kb on - strand, within MPMX20_01834at 1928.639 kb on + strand, within MPMX20_01834at 1928.652 kb on - strand, within MPMX20_01834at 1928.657 kb on - strand, within MPMX20_01834at 1928.720 kb on - strand, within MPMX20_01834at 1928.742 kb on + strand, within MPMX20_01834at 1928.742 kb on + strand, within MPMX20_01834at 1928.742 kb on + strand, within MPMX20_01834at 1928.750 kb on - strand, within MPMX20_01834at 1928.830 kb on + strand, within MPMX20_01834at 1928.839 kb on + strand, within MPMX20_01834at 1928.849 kb on + strand, within MPMX20_01834at 1928.857 kb on - strand, within MPMX20_01834at 1928.870 kb on + strand, within MPMX20_01834at 1928.878 kb on - strand, within MPMX20_01834at 1928.896 kb on + strand, within MPMX20_01834at 1928.923 kb on - strand, within MPMX20_01834at 1928.952 kb on - strand, within MPMX20_01834at 1928.986 kb on - strand, within MPMX20_01834at 1929.031 kb on + strand, within MPMX20_01834at 1929.045 kb on + strand, within MPMX20_01834at 1929.046 kb on + strand, within MPMX20_01834at 1929.053 kb on - strand, within MPMX20_01834at 1929.065 kb on - strand, within MPMX20_01834at 1929.090 kb on + strandat 1929.095 kb on + strandat 1929.122 kb on + strandat 1929.122 kb on + strandat 1929.156 kb on - strandat 1929.209 kb on - strandat 1929.209 kb on - strandat 1929.209 kb on - strandat 1929.209 kb on - strandat 1929.248 kb on + strandat 1929.304 kb on + strandat 1929.434 kb on + strand, within MPMX20_01835at 1929.465 kb on + strand, within MPMX20_01835at 1929.541 kb on + strand, within MPMX20_01835at 1929.612 kb on - strand, within MPMX20_01835at 1929.693 kb on - strand, within MPMX20_01835at 1929.747 kb on - strand, within MPMX20_01835at 1929.799 kb on - strand, within MPMX20_01835at 1929.842 kb on + strand, within MPMX20_01835at 1929.962 kb on + strand, within MPMX20_01835at 1929.998 kb on - strand, within MPMX20_01835at 1930.041 kb on - strandat 1930.070 kb on + strandat 1930.098 kb on - strandat 1930.101 kb on + strandat 1930.143 kb on + strand, within MPMX20_01836at 1930.196 kb on + strand, within MPMX20_01836at 1930.206 kb on + strand, within MPMX20_01836at 1930.285 kb on + strand, within MPMX20_01836at 1930.294 kb on + strand, within MPMX20_01836at 1930.302 kb on - strand, within MPMX20_01836at 1930.363 kb on + strand, within MPMX20_01836at 1930.389 kb on + strand, within MPMX20_01836at 1930.405 kb on - strand, within MPMX20_01836at 1930.498 kb on + strandat 1930.522 kb on - strandat 1930.537 kb on + strandat 1930.545 kb on - strandat 1930.590 kb on + strandat 1930.602 kb on + strandat 1930.602 kb on + strandat 1930.691 kb on + strand, within MPMX20_01837at 1930.722 kb on + strand, within MPMX20_01837at 1930.730 kb on - strand, within MPMX20_01837at 1930.730 kb on - strand, within MPMX20_01837at 1930.777 kb on - strandat 1930.812 kb on + strandat 1930.820 kb on - strandat 1930.915 kb on - strand, within MPMX20_01838at 1931.027 kb on - strand, within MPMX20_01838at 1931.057 kb on - strand, within MPMX20_01838

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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1,928,313 + MPMX20_01834 0.26 -1.2
1,928,345 + MPMX20_01834 0.28 +0.1
1,928,422 + MPMX20_01834 0.35 +0.2
1,928,454 + MPMX20_01834 0.37 -0.2
1,928,457 - MPMX20_01834 0.38 -1.0
1,928,471 + MPMX20_01834 0.39 +0.8
1,928,471 + MPMX20_01834 0.39 +0.2
1,928,605 - MPMX20_01834 0.50 +0.1
1,928,639 + MPMX20_01834 0.53 -0.1
1,928,652 - MPMX20_01834 0.54 +0.6
1,928,657 - MPMX20_01834 0.54 -0.7
1,928,720 - MPMX20_01834 0.60 +0.5
1,928,742 + MPMX20_01834 0.62 +2.4
1,928,742 + MPMX20_01834 0.62 -0.2
1,928,742 + MPMX20_01834 0.62 -0.2
1,928,750 - MPMX20_01834 0.62 +0.5
1,928,830 + MPMX20_01834 0.69 -0.1
1,928,839 + MPMX20_01834 0.70 +0.4
1,928,849 + MPMX20_01834 0.71 -0.3
1,928,857 - MPMX20_01834 0.71 -0.5
1,928,870 + MPMX20_01834 0.72 +0.1
1,928,878 - MPMX20_01834 0.73 -0.9
1,928,896 + MPMX20_01834 0.75 -0.5
1,928,923 - MPMX20_01834 0.77 -0.3
1,928,952 - MPMX20_01834 0.79 +0.8
1,928,986 - MPMX20_01834 0.82 +0.2
1,929,031 + MPMX20_01834 0.86 -0.2
1,929,045 + MPMX20_01834 0.87 -0.4
1,929,046 + MPMX20_01834 0.87 +0.4
1,929,053 - MPMX20_01834 0.88 -0.2
1,929,065 - MPMX20_01834 0.89 +0.4
1,929,090 + +0.0
1,929,095 + +0.5
1,929,122 + -0.6
1,929,122 + -0.5
1,929,156 - -0.7
1,929,209 - +1.0
1,929,209 - +2.0
1,929,209 - -0.5
1,929,209 - +0.4
1,929,248 + +1.1
1,929,304 + -0.6
1,929,434 + MPMX20_01835 0.17 +0.8
1,929,465 + MPMX20_01835 0.21 +0.2
1,929,541 + MPMX20_01835 0.31 -1.8
1,929,612 - MPMX20_01835 0.40 -0.5
1,929,693 - MPMX20_01835 0.50 -0.1
1,929,747 - MPMX20_01835 0.57 -0.2
1,929,799 - MPMX20_01835 0.63 +1.6
1,929,842 + MPMX20_01835 0.69 +0.2
1,929,962 + MPMX20_01835 0.84 +0.6
1,929,998 - MPMX20_01835 0.89 +0.6
1,930,041 - -0.3
1,930,070 + +1.8
1,930,098 - -0.3
1,930,101 + +0.1
1,930,143 + MPMX20_01836 0.16 +0.4
1,930,196 + MPMX20_01836 0.28 +0.5
1,930,206 + MPMX20_01836 0.30 -0.4
1,930,285 + MPMX20_01836 0.48 +0.4
1,930,294 + MPMX20_01836 0.50 -1.6
1,930,302 - MPMX20_01836 0.51 +1.0
1,930,363 + MPMX20_01836 0.65 -1.2
1,930,389 + MPMX20_01836 0.71 +1.2
1,930,405 - MPMX20_01836 0.74 -0.7
1,930,498 + +0.8
1,930,522 - +0.4
1,930,537 + +2.2
1,930,545 - -0.4
1,930,590 + +0.4
1,930,602 + -0.2
1,930,602 + -0.5
1,930,691 + MPMX20_01837 0.26 +0.7
1,930,722 + MPMX20_01837 0.55 +0.7
1,930,730 - MPMX20_01837 0.63 -0.1
1,930,730 - MPMX20_01837 0.63 -1.5
1,930,777 - +0.6
1,930,812 + -0.8
1,930,820 - -0.9
1,930,915 - MPMX20_01838 0.25 -1.1
1,931,027 - MPMX20_01838 0.48 +0.4
1,931,057 - MPMX20_01838 0.53 -0.7

Or see this region's nucleotide sequence