Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01565

Experiment: D-Glucosamine Hydrochloride (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01564 and MPMX20_01565 are separated by 127 nucleotidesMPMX20_01565 and MPMX20_01566 are separated by 162 nucleotides MPMX20_01564: MPMX20_01564 - Ribosomal protein S12 methylthiotransferase accessory factor YcaO, at 1,643,650 to 1,645,410 _01564 MPMX20_01565: MPMX20_01565 - hypothetical protein, at 1,645,538 to 1,646,230 _01565 MPMX20_01566: MPMX20_01566 - Phosphoserine aminotransferase, at 1,646,393 to 1,647,481 _01566 Position (kb) 1645 1646 1647Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 1644.542 kb on - strand, within MPMX20_01564at 1644.627 kb on + strand, within MPMX20_01564at 1644.812 kb on + strand, within MPMX20_01564at 1644.822 kb on + strand, within MPMX20_01564at 1644.822 kb on + strand, within MPMX20_01564at 1644.830 kb on - strand, within MPMX20_01564at 1644.866 kb on + strand, within MPMX20_01564at 1644.872 kb on + strand, within MPMX20_01564at 1644.874 kb on - strand, within MPMX20_01564at 1644.876 kb on + strand, within MPMX20_01564at 1644.884 kb on - strand, within MPMX20_01564at 1645.052 kb on + strand, within MPMX20_01564at 1645.060 kb on - strand, within MPMX20_01564at 1645.060 kb on - strand, within MPMX20_01564at 1645.130 kb on + strand, within MPMX20_01564at 1645.201 kb on + strand, within MPMX20_01564at 1645.202 kb on - strand, within MPMX20_01564at 1645.209 kb on - strand, within MPMX20_01564at 1645.226 kb on + strand, within MPMX20_01564at 1645.232 kb on - strand, within MPMX20_01564at 1645.234 kb on - strand, within MPMX20_01564at 1645.238 kb on + strandat 1645.243 kb on + strandat 1645.251 kb on - strandat 1645.251 kb on - strandat 1645.257 kb on - strandat 1645.277 kb on + strandat 1645.285 kb on - strandat 1645.285 kb on - strandat 1645.285 kb on - strandat 1645.290 kb on - strandat 1645.295 kb on + strandat 1645.303 kb on - strandat 1645.326 kb on + strandat 1645.335 kb on - strandat 1645.414 kb on - strandat 1645.419 kb on + strandat 1645.427 kb on - strandat 1645.427 kb on - strandat 1645.465 kb on + strandat 1645.465 kb on + strandat 1645.466 kb on + strandat 1645.466 kb on + strandat 1645.466 kb on + strandat 1645.466 kb on + strandat 1645.516 kb on - strandat 1645.599 kb on + strandat 1645.604 kb on + strandat 1645.612 kb on - strand, within MPMX20_01565at 1645.616 kb on + strand, within MPMX20_01565at 1645.617 kb on - strand, within MPMX20_01565at 1645.618 kb on + strand, within MPMX20_01565at 1645.623 kb on + strand, within MPMX20_01565at 1645.623 kb on + strand, within MPMX20_01565at 1645.624 kb on - strand, within MPMX20_01565at 1645.624 kb on - strand, within MPMX20_01565at 1645.624 kb on - strand, within MPMX20_01565at 1645.624 kb on - strand, within MPMX20_01565at 1645.626 kb on - strand, within MPMX20_01565at 1645.631 kb on - strand, within MPMX20_01565at 1645.631 kb on - strand, within MPMX20_01565at 1645.631 kb on - strand, within MPMX20_01565at 1645.631 kb on - strand, within MPMX20_01565at 1645.694 kb on - strand, within MPMX20_01565at 1645.694 kb on - strand, within MPMX20_01565at 1645.714 kb on + strand, within MPMX20_01565at 1645.714 kb on + strand, within MPMX20_01565at 1645.716 kb on + strand, within MPMX20_01565at 1645.722 kb on - strand, within MPMX20_01565at 1645.724 kb on - strand, within MPMX20_01565at 1645.768 kb on - strand, within MPMX20_01565at 1645.813 kb on - strand, within MPMX20_01565at 1645.830 kb on + strand, within MPMX20_01565at 1645.904 kb on + strand, within MPMX20_01565at 1645.919 kb on - strand, within MPMX20_01565at 1645.949 kb on + strand, within MPMX20_01565at 1645.949 kb on + strand, within MPMX20_01565at 1645.957 kb on - strand, within MPMX20_01565at 1645.959 kb on + strand, within MPMX20_01565at 1645.959 kb on + strand, within MPMX20_01565at 1645.969 kb on + strand, within MPMX20_01565at 1645.969 kb on + strand, within MPMX20_01565at 1646.023 kb on + strand, within MPMX20_01565at 1646.041 kb on + strand, within MPMX20_01565at 1646.054 kb on - strand, within MPMX20_01565at 1646.061 kb on - strand, within MPMX20_01565at 1646.063 kb on - strand, within MPMX20_01565at 1646.063 kb on - strand, within MPMX20_01565at 1646.081 kb on - strand, within MPMX20_01565at 1646.086 kb on + strand, within MPMX20_01565at 1646.108 kb on + strand, within MPMX20_01565at 1646.111 kb on + strand, within MPMX20_01565at 1646.135 kb on - strand, within MPMX20_01565at 1646.189 kb on - strandat 1646.196 kb on + strandat 1646.211 kb on - strandat 1646.276 kb on + strandat 1646.281 kb on + strandat 1646.300 kb on + strandat 1646.316 kb on - strandat 1646.316 kb on - strandat 1646.326 kb on - strandat 1646.358 kb on + strandat 1646.366 kb on - strandat 1646.372 kb on - strandat 1646.439 kb on - strandat 1646.445 kb on + strandat 1646.453 kb on - strandat 1646.484 kb on + strandat 1646.488 kb on + strandat 1646.541 kb on + strand, within MPMX20_01566at 1646.570 kb on + strand, within MPMX20_01566at 1646.572 kb on + strand, within MPMX20_01566at 1646.578 kb on - strand, within MPMX20_01566at 1646.578 kb on - strand, within MPMX20_01566at 1646.597 kb on + strand, within MPMX20_01566at 1646.605 kb on - strand, within MPMX20_01566at 1646.678 kb on - strand, within MPMX20_01566at 1646.687 kb on - strand, within MPMX20_01566at 1646.766 kb on + strand, within MPMX20_01566at 1646.784 kb on - strand, within MPMX20_01566at 1646.796 kb on - strand, within MPMX20_01566at 1646.799 kb on + strand, within MPMX20_01566at 1646.876 kb on + strand, within MPMX20_01566at 1646.960 kb on + strand, within MPMX20_01566at 1646.976 kb on - strand, within MPMX20_01566at 1647.037 kb on + strand, within MPMX20_01566at 1647.037 kb on + strand, within MPMX20_01566at 1647.037 kb on - strand, within MPMX20_01566at 1647.045 kb on - strand, within MPMX20_01566at 1647.051 kb on + strand, within MPMX20_01566at 1647.065 kb on + strand, within MPMX20_01566at 1647.070 kb on + strand, within MPMX20_01566at 1647.080 kb on + strand, within MPMX20_01566at 1647.130 kb on + strand, within MPMX20_01566at 1647.134 kb on - strand, within MPMX20_01566at 1647.143 kb on - strand, within MPMX20_01566at 1647.143 kb on - strand, within MPMX20_01566at 1647.143 kb on - strand, within MPMX20_01566at 1647.148 kb on - strand, within MPMX20_01566at 1647.148 kb on - strand, within MPMX20_01566at 1647.225 kb on - strand, within MPMX20_01566

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
remove
1,644,542 - MPMX20_01564 0.51 +2.4
1,644,627 + MPMX20_01564 0.55 +0.9
1,644,812 + MPMX20_01564 0.66 -0.2
1,644,822 + MPMX20_01564 0.67 -0.7
1,644,822 + MPMX20_01564 0.67 +0.4
1,644,830 - MPMX20_01564 0.67 -2.7
1,644,866 + MPMX20_01564 0.69 -0.9
1,644,872 + MPMX20_01564 0.69 +1.0
1,644,874 - MPMX20_01564 0.70 +0.4
1,644,876 + MPMX20_01564 0.70 +1.3
1,644,884 - MPMX20_01564 0.70 -0.9
1,645,052 + MPMX20_01564 0.80 +1.6
1,645,060 - MPMX20_01564 0.80 -0.3
1,645,060 - MPMX20_01564 0.80 +0.4
1,645,130 + MPMX20_01564 0.84 -0.5
1,645,201 + MPMX20_01564 0.88 -0.9
1,645,202 - MPMX20_01564 0.88 -0.2
1,645,209 - MPMX20_01564 0.89 -0.0
1,645,226 + MPMX20_01564 0.89 -0.4
1,645,232 - MPMX20_01564 0.90 +0.0
1,645,234 - MPMX20_01564 0.90 +1.8
1,645,238 + +0.0
1,645,243 + -0.3
1,645,251 - -0.7
1,645,251 - +0.3
1,645,257 - -0.4
1,645,277 + +0.8
1,645,285 - +0.0
1,645,285 - -1.5
1,645,285 - -2.1
1,645,290 - -0.4
1,645,295 + -1.0
1,645,303 - +0.9
1,645,326 + +0.3
1,645,335 - +0.5
1,645,414 - +2.0
1,645,419 + -0.8
1,645,427 - +2.9
1,645,427 - -0.2
1,645,465 + +0.3
1,645,465 + -0.7
1,645,466 + +2.6
1,645,466 + -0.1
1,645,466 + -0.5
1,645,466 + +1.3
1,645,516 - +1.5
1,645,599 + -0.5
1,645,604 + -0.2
1,645,612 - MPMX20_01565 0.11 -0.9
1,645,616 + MPMX20_01565 0.11 -0.3
1,645,617 - MPMX20_01565 0.11 +1.4
1,645,618 + MPMX20_01565 0.12 -0.1
1,645,623 + MPMX20_01565 0.12 +0.3
1,645,623 + MPMX20_01565 0.12 +0.7
1,645,624 - MPMX20_01565 0.12 +0.5
1,645,624 - MPMX20_01565 0.12 +0.7
1,645,624 - MPMX20_01565 0.12 -0.3
1,645,624 - MPMX20_01565 0.12 -0.1
1,645,626 - MPMX20_01565 0.13 +0.4
1,645,631 - MPMX20_01565 0.13 +0.1
1,645,631 - MPMX20_01565 0.13 +0.9
1,645,631 - MPMX20_01565 0.13 +1.3
1,645,631 - MPMX20_01565 0.13 +2.1
1,645,694 - MPMX20_01565 0.23 +1.7
1,645,694 - MPMX20_01565 0.23 +0.5
1,645,714 + MPMX20_01565 0.25 -0.0
1,645,714 + MPMX20_01565 0.25 +0.1
1,645,716 + MPMX20_01565 0.26 +0.5
1,645,722 - MPMX20_01565 0.27 -0.1
1,645,724 - MPMX20_01565 0.27 +0.2
1,645,768 - MPMX20_01565 0.33 +0.5
1,645,813 - MPMX20_01565 0.40 +0.5
1,645,830 + MPMX20_01565 0.42 -0.3
1,645,904 + MPMX20_01565 0.53 +0.2
1,645,919 - MPMX20_01565 0.55 -1.8
1,645,949 + MPMX20_01565 0.59 -1.2
1,645,949 + MPMX20_01565 0.59 +0.9
1,645,957 - MPMX20_01565 0.60 -0.1
1,645,959 + MPMX20_01565 0.61 -0.5
1,645,959 + MPMX20_01565 0.61 +0.1
1,645,969 + MPMX20_01565 0.62 +1.0
1,645,969 + MPMX20_01565 0.62 -1.1
1,646,023 + MPMX20_01565 0.70 -1.1
1,646,041 + MPMX20_01565 0.73 +0.2
1,646,054 - MPMX20_01565 0.74 +0.3
1,646,061 - MPMX20_01565 0.75 -0.9
1,646,063 - MPMX20_01565 0.76 -0.8
1,646,063 - MPMX20_01565 0.76 +0.6
1,646,081 - MPMX20_01565 0.78 -0.3
1,646,086 + MPMX20_01565 0.79 -0.9
1,646,108 + MPMX20_01565 0.82 -0.9
1,646,111 + MPMX20_01565 0.83 -0.9
1,646,135 - MPMX20_01565 0.86 +0.2
1,646,189 - -0.2
1,646,196 + -0.6
1,646,211 - +1.1
1,646,276 + +0.2
1,646,281 + +0.3
1,646,300 + +0.5
1,646,316 - -0.1
1,646,316 - -0.9
1,646,326 - -1.1
1,646,358 + +0.5
1,646,366 - -2.0
1,646,372 - -2.6
1,646,439 - -4.0
1,646,445 + -3.4
1,646,453 - -4.4
1,646,484 + -2.4
1,646,488 + -4.9
1,646,541 + MPMX20_01566 0.14 -3.4
1,646,570 + MPMX20_01566 0.16 -5.2
1,646,572 + MPMX20_01566 0.16 -4.8
1,646,578 - MPMX20_01566 0.17 -4.3
1,646,578 - MPMX20_01566 0.17 -0.8
1,646,597 + MPMX20_01566 0.19 -4.2
1,646,605 - MPMX20_01566 0.19 -4.3
1,646,678 - MPMX20_01566 0.26 -4.2
1,646,687 - MPMX20_01566 0.27 -4.6
1,646,766 + MPMX20_01566 0.34 +0.5
1,646,784 - MPMX20_01566 0.36 -2.5
1,646,796 - MPMX20_01566 0.37 -3.8
1,646,799 + MPMX20_01566 0.37 -5.7
1,646,876 + MPMX20_01566 0.44 -4.7
1,646,960 + MPMX20_01566 0.52 -5.3
1,646,976 - MPMX20_01566 0.54 -5.0
1,647,037 + MPMX20_01566 0.59 -5.7
1,647,037 + MPMX20_01566 0.59 -4.0
1,647,037 - MPMX20_01566 0.59 -0.5
1,647,045 - MPMX20_01566 0.60 -3.4
1,647,051 + MPMX20_01566 0.60 -3.9
1,647,065 + MPMX20_01566 0.62 -5.2
1,647,070 + MPMX20_01566 0.62 -5.1
1,647,080 + MPMX20_01566 0.63 -5.7
1,647,130 + MPMX20_01566 0.68 -2.7
1,647,134 - MPMX20_01566 0.68 -4.4
1,647,143 - MPMX20_01566 0.69 -3.1
1,647,143 - MPMX20_01566 0.69 -2.7
1,647,143 - MPMX20_01566 0.69 -2.6
1,647,148 - MPMX20_01566 0.69 -2.4
1,647,148 - MPMX20_01566 0.69 -5.9
1,647,225 - MPMX20_01566 0.76 -4.8

Or see this region's nucleotide sequence