Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01564 and MPMX20_01565 are separated by 127 nucleotides MPMX20_01565 and MPMX20_01566 are separated by 162 nucleotides
MPMX20_01564: MPMX20_01564 - Ribosomal protein S12 methylthiotransferase accessory factor YcaO, at 1,643,650 to 1,645,410
_01564
MPMX20_01565: MPMX20_01565 - hypothetical protein, at 1,645,538 to 1,646,230
_01565
MPMX20_01566: MPMX20_01566 - Phosphoserine aminotransferase, at 1,646,393 to 1,647,481
_01566
Position (kb)
1645
1646
1647 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2
3 at 1644.542 kb on - strand, within MPMX20_01564 at 1644.627 kb on + strand, within MPMX20_01564 at 1644.812 kb on + strand, within MPMX20_01564 at 1644.822 kb on + strand, within MPMX20_01564 at 1644.822 kb on + strand, within MPMX20_01564 at 1644.830 kb on - strand, within MPMX20_01564 at 1644.866 kb on + strand, within MPMX20_01564 at 1644.872 kb on + strand, within MPMX20_01564 at 1644.874 kb on - strand, within MPMX20_01564 at 1644.876 kb on + strand, within MPMX20_01564 at 1644.884 kb on - strand, within MPMX20_01564 at 1645.052 kb on + strand, within MPMX20_01564 at 1645.060 kb on - strand, within MPMX20_01564 at 1645.060 kb on - strand, within MPMX20_01564 at 1645.130 kb on + strand, within MPMX20_01564 at 1645.201 kb on + strand, within MPMX20_01564 at 1645.202 kb on - strand, within MPMX20_01564 at 1645.209 kb on - strand, within MPMX20_01564 at 1645.226 kb on + strand, within MPMX20_01564 at 1645.232 kb on - strand, within MPMX20_01564 at 1645.234 kb on - strand, within MPMX20_01564 at 1645.238 kb on + strand at 1645.243 kb on + strand at 1645.251 kb on - strand at 1645.251 kb on - strand at 1645.257 kb on - strand at 1645.277 kb on + strand at 1645.285 kb on - strand at 1645.285 kb on - strand at 1645.285 kb on - strand at 1645.290 kb on - strand at 1645.295 kb on + strand at 1645.303 kb on - strand at 1645.326 kb on + strand at 1645.335 kb on - strand at 1645.414 kb on - strand at 1645.419 kb on + strand at 1645.427 kb on - strand at 1645.427 kb on - strand at 1645.465 kb on + strand at 1645.465 kb on + strand at 1645.466 kb on + strand at 1645.466 kb on + strand at 1645.466 kb on + strand at 1645.466 kb on + strand at 1645.516 kb on - strand at 1645.599 kb on + strand at 1645.604 kb on + strand at 1645.612 kb on - strand, within MPMX20_01565 at 1645.616 kb on + strand, within MPMX20_01565 at 1645.617 kb on - strand, within MPMX20_01565 at 1645.618 kb on + strand, within MPMX20_01565 at 1645.623 kb on + strand, within MPMX20_01565 at 1645.623 kb on + strand, within MPMX20_01565 at 1645.624 kb on - strand, within MPMX20_01565 at 1645.624 kb on - strand, within MPMX20_01565 at 1645.624 kb on - strand, within MPMX20_01565 at 1645.624 kb on - strand, within MPMX20_01565 at 1645.626 kb on - strand, within MPMX20_01565 at 1645.631 kb on - strand, within MPMX20_01565 at 1645.631 kb on - strand, within MPMX20_01565 at 1645.631 kb on - strand, within MPMX20_01565 at 1645.631 kb on - strand, within MPMX20_01565 at 1645.694 kb on - strand, within MPMX20_01565 at 1645.694 kb on - strand, within MPMX20_01565 at 1645.714 kb on + strand, within MPMX20_01565 at 1645.714 kb on + strand, within MPMX20_01565 at 1645.716 kb on + strand, within MPMX20_01565 at 1645.722 kb on - strand, within MPMX20_01565 at 1645.724 kb on - strand, within MPMX20_01565 at 1645.768 kb on - strand, within MPMX20_01565 at 1645.813 kb on - strand, within MPMX20_01565 at 1645.830 kb on + strand, within MPMX20_01565 at 1645.904 kb on + strand, within MPMX20_01565 at 1645.919 kb on - strand, within MPMX20_01565 at 1645.949 kb on + strand, within MPMX20_01565 at 1645.949 kb on + strand, within MPMX20_01565 at 1645.957 kb on - strand, within MPMX20_01565 at 1645.959 kb on + strand, within MPMX20_01565 at 1645.959 kb on + strand, within MPMX20_01565 at 1645.969 kb on + strand, within MPMX20_01565 at 1645.969 kb on + strand, within MPMX20_01565 at 1646.023 kb on + strand, within MPMX20_01565 at 1646.041 kb on + strand, within MPMX20_01565 at 1646.054 kb on - strand, within MPMX20_01565 at 1646.061 kb on - strand, within MPMX20_01565 at 1646.063 kb on - strand, within MPMX20_01565 at 1646.063 kb on - strand, within MPMX20_01565 at 1646.081 kb on - strand, within MPMX20_01565 at 1646.086 kb on + strand, within MPMX20_01565 at 1646.108 kb on + strand, within MPMX20_01565 at 1646.111 kb on + strand, within MPMX20_01565 at 1646.135 kb on - strand, within MPMX20_01565 at 1646.189 kb on - strand at 1646.196 kb on + strand at 1646.211 kb on - strand at 1646.276 kb on + strand at 1646.281 kb on + strand at 1646.300 kb on + strand at 1646.316 kb on - strand at 1646.316 kb on - strand at 1646.326 kb on - strand at 1646.358 kb on + strand at 1646.366 kb on - strand at 1646.372 kb on - strand at 1646.439 kb on - strand at 1646.445 kb on + strand at 1646.453 kb on - strand at 1646.484 kb on + strand at 1646.488 kb on + strand at 1646.541 kb on + strand, within MPMX20_01566 at 1646.570 kb on + strand, within MPMX20_01566 at 1646.572 kb on + strand, within MPMX20_01566 at 1646.578 kb on - strand, within MPMX20_01566 at 1646.578 kb on - strand, within MPMX20_01566 at 1646.597 kb on + strand, within MPMX20_01566 at 1646.605 kb on - strand, within MPMX20_01566 at 1646.678 kb on - strand, within MPMX20_01566 at 1646.687 kb on - strand, within MPMX20_01566 at 1646.766 kb on + strand, within MPMX20_01566 at 1646.784 kb on - strand, within MPMX20_01566 at 1646.796 kb on - strand, within MPMX20_01566 at 1646.799 kb on + strand, within MPMX20_01566 at 1646.876 kb on + strand, within MPMX20_01566 at 1646.960 kb on + strand, within MPMX20_01566 at 1646.976 kb on - strand, within MPMX20_01566 at 1647.037 kb on + strand, within MPMX20_01566 at 1647.037 kb on + strand, within MPMX20_01566 at 1647.037 kb on - strand, within MPMX20_01566 at 1647.045 kb on - strand, within MPMX20_01566 at 1647.051 kb on + strand, within MPMX20_01566 at 1647.065 kb on + strand, within MPMX20_01566 at 1647.070 kb on + strand, within MPMX20_01566 at 1647.080 kb on + strand, within MPMX20_01566 at 1647.130 kb on + strand, within MPMX20_01566 at 1647.134 kb on - strand, within MPMX20_01566 at 1647.143 kb on - strand, within MPMX20_01566 at 1647.143 kb on - strand, within MPMX20_01566 at 1647.143 kb on - strand, within MPMX20_01566 at 1647.148 kb on - strand, within MPMX20_01566 at 1647.148 kb on - strand, within MPMX20_01566 at 1647.225 kb on - strand, within MPMX20_01566
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 1,644,542 - MPMX20_01564 0.51 +2.4 1,644,627 + MPMX20_01564 0.55 +0.9 1,644,812 + MPMX20_01564 0.66 -0.2 1,644,822 + MPMX20_01564 0.67 -0.7 1,644,822 + MPMX20_01564 0.67 +0.4 1,644,830 - MPMX20_01564 0.67 -2.7 1,644,866 + MPMX20_01564 0.69 -0.9 1,644,872 + MPMX20_01564 0.69 +1.0 1,644,874 - MPMX20_01564 0.70 +0.4 1,644,876 + MPMX20_01564 0.70 +1.3 1,644,884 - MPMX20_01564 0.70 -0.9 1,645,052 + MPMX20_01564 0.80 +1.6 1,645,060 - MPMX20_01564 0.80 -0.3 1,645,060 - MPMX20_01564 0.80 +0.4 1,645,130 + MPMX20_01564 0.84 -0.5 1,645,201 + MPMX20_01564 0.88 -0.9 1,645,202 - MPMX20_01564 0.88 -0.2 1,645,209 - MPMX20_01564 0.89 -0.0 1,645,226 + MPMX20_01564 0.89 -0.4 1,645,232 - MPMX20_01564 0.90 +0.0 1,645,234 - MPMX20_01564 0.90 +1.8 1,645,238 + +0.0 1,645,243 + -0.3 1,645,251 - -0.7 1,645,251 - +0.3 1,645,257 - -0.4 1,645,277 + +0.8 1,645,285 - +0.0 1,645,285 - -1.5 1,645,285 - -2.1 1,645,290 - -0.4 1,645,295 + -1.0 1,645,303 - +0.9 1,645,326 + +0.3 1,645,335 - +0.5 1,645,414 - +2.0 1,645,419 + -0.8 1,645,427 - +2.9 1,645,427 - -0.2 1,645,465 + +0.3 1,645,465 + -0.7 1,645,466 + +2.6 1,645,466 + -0.1 1,645,466 + -0.5 1,645,466 + +1.3 1,645,516 - +1.5 1,645,599 + -0.5 1,645,604 + -0.2 1,645,612 - MPMX20_01565 0.11 -0.9 1,645,616 + MPMX20_01565 0.11 -0.3 1,645,617 - MPMX20_01565 0.11 +1.4 1,645,618 + MPMX20_01565 0.12 -0.1 1,645,623 + MPMX20_01565 0.12 +0.3 1,645,623 + MPMX20_01565 0.12 +0.7 1,645,624 - MPMX20_01565 0.12 +0.5 1,645,624 - MPMX20_01565 0.12 +0.7 1,645,624 - MPMX20_01565 0.12 -0.3 1,645,624 - MPMX20_01565 0.12 -0.1 1,645,626 - MPMX20_01565 0.13 +0.4 1,645,631 - MPMX20_01565 0.13 +0.1 1,645,631 - MPMX20_01565 0.13 +0.9 1,645,631 - MPMX20_01565 0.13 +1.3 1,645,631 - MPMX20_01565 0.13 +2.1 1,645,694 - MPMX20_01565 0.23 +1.7 1,645,694 - MPMX20_01565 0.23 +0.5 1,645,714 + MPMX20_01565 0.25 -0.0 1,645,714 + MPMX20_01565 0.25 +0.1 1,645,716 + MPMX20_01565 0.26 +0.5 1,645,722 - MPMX20_01565 0.27 -0.1 1,645,724 - MPMX20_01565 0.27 +0.2 1,645,768 - MPMX20_01565 0.33 +0.5 1,645,813 - MPMX20_01565 0.40 +0.5 1,645,830 + MPMX20_01565 0.42 -0.3 1,645,904 + MPMX20_01565 0.53 +0.2 1,645,919 - MPMX20_01565 0.55 -1.8 1,645,949 + MPMX20_01565 0.59 -1.2 1,645,949 + MPMX20_01565 0.59 +0.9 1,645,957 - MPMX20_01565 0.60 -0.1 1,645,959 + MPMX20_01565 0.61 -0.5 1,645,959 + MPMX20_01565 0.61 +0.1 1,645,969 + MPMX20_01565 0.62 +1.0 1,645,969 + MPMX20_01565 0.62 -1.1 1,646,023 + MPMX20_01565 0.70 -1.1 1,646,041 + MPMX20_01565 0.73 +0.2 1,646,054 - MPMX20_01565 0.74 +0.3 1,646,061 - MPMX20_01565 0.75 -0.9 1,646,063 - MPMX20_01565 0.76 -0.8 1,646,063 - MPMX20_01565 0.76 +0.6 1,646,081 - MPMX20_01565 0.78 -0.3 1,646,086 + MPMX20_01565 0.79 -0.9 1,646,108 + MPMX20_01565 0.82 -0.9 1,646,111 + MPMX20_01565 0.83 -0.9 1,646,135 - MPMX20_01565 0.86 +0.2 1,646,189 - -0.2 1,646,196 + -0.6 1,646,211 - +1.1 1,646,276 + +0.2 1,646,281 + +0.3 1,646,300 + +0.5 1,646,316 - -0.1 1,646,316 - -0.9 1,646,326 - -1.1 1,646,358 + +0.5 1,646,366 - -2.0 1,646,372 - -2.6 1,646,439 - -4.0 1,646,445 + -3.4 1,646,453 - -4.4 1,646,484 + -2.4 1,646,488 + -4.9 1,646,541 + MPMX20_01566 0.14 -3.4 1,646,570 + MPMX20_01566 0.16 -5.2 1,646,572 + MPMX20_01566 0.16 -4.8 1,646,578 - MPMX20_01566 0.17 -4.3 1,646,578 - MPMX20_01566 0.17 -0.8 1,646,597 + MPMX20_01566 0.19 -4.2 1,646,605 - MPMX20_01566 0.19 -4.3 1,646,678 - MPMX20_01566 0.26 -4.2 1,646,687 - MPMX20_01566 0.27 -4.6 1,646,766 + MPMX20_01566 0.34 +0.5 1,646,784 - MPMX20_01566 0.36 -2.5 1,646,796 - MPMX20_01566 0.37 -3.8 1,646,799 + MPMX20_01566 0.37 -5.7 1,646,876 + MPMX20_01566 0.44 -4.7 1,646,960 + MPMX20_01566 0.52 -5.3 1,646,976 - MPMX20_01566 0.54 -5.0 1,647,037 + MPMX20_01566 0.59 -5.7 1,647,037 + MPMX20_01566 0.59 -4.0 1,647,037 - MPMX20_01566 0.59 -0.5 1,647,045 - MPMX20_01566 0.60 -3.4 1,647,051 + MPMX20_01566 0.60 -3.9 1,647,065 + MPMX20_01566 0.62 -5.2 1,647,070 + MPMX20_01566 0.62 -5.1 1,647,080 + MPMX20_01566 0.63 -5.7 1,647,130 + MPMX20_01566 0.68 -2.7 1,647,134 - MPMX20_01566 0.68 -4.4 1,647,143 - MPMX20_01566 0.69 -3.1 1,647,143 - MPMX20_01566 0.69 -2.7 1,647,143 - MPMX20_01566 0.69 -2.6 1,647,148 - MPMX20_01566 0.69 -2.4 1,647,148 - MPMX20_01566 0.69 -5.9 1,647,225 - MPMX20_01566 0.76 -4.8
Or see this region's nucleotide sequence