Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01324 and MPMX20_01325 are separated by 326 nucleotides MPMX20_01325 and MPMX20_01326 are separated by 169 nucleotides
MPMX20_01324: MPMX20_01324 - Glucosamine-6-phosphate deaminase, at 1,381,240 to 1,382,040
_01324
MPMX20_01325: MPMX20_01325 - PTS system N-acetylglucosamine-specific EIICBA component, at 1,382,367 to 1,384,316
_01325
MPMX20_01326: MPMX20_01326 - Glutamine--tRNA ligase, at 1,384,486 to 1,386,153
_01326
Position (kb)
1382
1383
1384
1385 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 1381.367 kb on + strand, within MPMX20_01324 at 1381.367 kb on + strand, within MPMX20_01324 at 1381.375 kb on - strand, within MPMX20_01324 at 1381.408 kb on - strand, within MPMX20_01324 at 1381.483 kb on - strand, within MPMX20_01324 at 1381.492 kb on + strand, within MPMX20_01324 at 1381.552 kb on + strand, within MPMX20_01324 at 1381.589 kb on - strand, within MPMX20_01324 at 1381.589 kb on - strand, within MPMX20_01324 at 1381.634 kb on + strand, within MPMX20_01324 at 1381.642 kb on - strand, within MPMX20_01324 at 1381.781 kb on - strand, within MPMX20_01324 at 1381.808 kb on + strand, within MPMX20_01324 at 1381.838 kb on - strand, within MPMX20_01324 at 1381.845 kb on - strand, within MPMX20_01324 at 1381.853 kb on + strand, within MPMX20_01324 at 1381.866 kb on - strand, within MPMX20_01324 at 1381.973 kb on - strand at 1381.973 kb on - strand at 1381.973 kb on - strand at 1382.061 kb on + strand at 1382.061 kb on + strand at 1382.105 kb on + strand at 1382.105 kb on + strand at 1382.105 kb on + strand at 1382.113 kb on - strand at 1382.114 kb on - strand at 1382.125 kb on + strand at 1382.266 kb on + strand at 1382.266 kb on + strand at 1382.266 kb on + strand at 1382.268 kb on + strand at 1382.272 kb on - strand at 1382.274 kb on - strand at 1382.324 kb on + strand at 1382.336 kb on + strand at 1382.358 kb on - strand at 1382.401 kb on + strand at 1382.414 kb on + strand at 1382.414 kb on + strand at 1382.414 kb on + strand at 1382.414 kb on + strand at 1382.414 kb on + strand at 1382.422 kb on - strand at 1382.422 kb on - strand at 1382.583 kb on + strand, within MPMX20_01325 at 1382.588 kb on + strand, within MPMX20_01325 at 1382.588 kb on + strand, within MPMX20_01325 at 1382.613 kb on - strand, within MPMX20_01325 at 1382.705 kb on - strand, within MPMX20_01325 at 1382.724 kb on + strand, within MPMX20_01325 at 1382.776 kb on - strand, within MPMX20_01325 at 1382.778 kb on + strand, within MPMX20_01325 at 1382.816 kb on + strand, within MPMX20_01325 at 1382.941 kb on - strand, within MPMX20_01325 at 1382.978 kb on + strand, within MPMX20_01325 at 1383.030 kb on + strand, within MPMX20_01325 at 1383.030 kb on + strand, within MPMX20_01325 at 1383.038 kb on - strand, within MPMX20_01325 at 1383.038 kb on - strand, within MPMX20_01325 at 1383.089 kb on + strand, within MPMX20_01325 at 1383.136 kb on + strand, within MPMX20_01325 at 1383.144 kb on - strand, within MPMX20_01325 at 1383.144 kb on - strand, within MPMX20_01325 at 1383.144 kb on - strand, within MPMX20_01325 at 1383.190 kb on + strand, within MPMX20_01325 at 1383.190 kb on + strand, within MPMX20_01325 at 1383.236 kb on + strand, within MPMX20_01325 at 1383.263 kb on - strand, within MPMX20_01325 at 1383.265 kb on + strand, within MPMX20_01325 at 1383.293 kb on + strand, within MPMX20_01325 at 1383.339 kb on + strand, within MPMX20_01325 at 1383.376 kb on + strand, within MPMX20_01325 at 1383.396 kb on + strand, within MPMX20_01325 at 1383.404 kb on - strand, within MPMX20_01325 at 1383.404 kb on - strand, within MPMX20_01325 at 1383.423 kb on + strand, within MPMX20_01325 at 1383.502 kb on - strand, within MPMX20_01325 at 1383.515 kb on - strand, within MPMX20_01325 at 1383.589 kb on - strand, within MPMX20_01325 at 1383.589 kb on - strand, within MPMX20_01325 at 1383.766 kb on + strand, within MPMX20_01325 at 1383.774 kb on - strand, within MPMX20_01325 at 1383.797 kb on - strand, within MPMX20_01325 at 1383.797 kb on - strand, within MPMX20_01325 at 1383.869 kb on + strand, within MPMX20_01325 at 1383.877 kb on - strand, within MPMX20_01325 at 1383.901 kb on - strand, within MPMX20_01325 at 1384.069 kb on + strand, within MPMX20_01325 at 1384.077 kb on + strand, within MPMX20_01325 at 1384.101 kb on + strand, within MPMX20_01325 at 1384.122 kb on + strand at 1384.140 kb on - strand at 1384.170 kb on + strand at 1384.179 kb on + strand at 1384.204 kb on + strand at 1384.230 kb on + strand at 1384.276 kb on + strand at 1384.303 kb on - strand at 1384.325 kb on + strand at 1384.330 kb on + strand at 1384.330 kb on + strand at 1384.332 kb on - strand at 1384.333 kb on - strand at 1384.337 kb on + strand at 1384.345 kb on - strand at 1384.345 kb on - strand at 1384.409 kb on + strand at 1384.410 kb on + strand at 1384.410 kb on + strand at 1384.417 kb on + strand at 1384.418 kb on + strand at 1384.418 kb on - strand at 1384.453 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 1,381,367 + MPMX20_01324 0.16 -4.0 1,381,367 + MPMX20_01324 0.16 -4.4 1,381,375 - MPMX20_01324 0.17 -3.1 1,381,408 - MPMX20_01324 0.21 -4.8 1,381,483 - MPMX20_01324 0.30 -0.9 1,381,492 + MPMX20_01324 0.31 -3.6 1,381,552 + MPMX20_01324 0.39 -0.9 1,381,589 - MPMX20_01324 0.44 -2.4 1,381,589 - MPMX20_01324 0.44 -1.8 1,381,634 + MPMX20_01324 0.49 -4.5 1,381,642 - MPMX20_01324 0.50 -4.5 1,381,781 - MPMX20_01324 0.68 -0.3 1,381,808 + MPMX20_01324 0.71 -4.0 1,381,838 - MPMX20_01324 0.75 -3.5 1,381,845 - MPMX20_01324 0.76 -4.9 1,381,853 + MPMX20_01324 0.77 -1.1 1,381,866 - MPMX20_01324 0.78 -4.5 1,381,973 - -3.6 1,381,973 - -0.6 1,381,973 - -2.9 1,382,061 + -2.1 1,382,061 + -2.4 1,382,105 + -2.0 1,382,105 + -1.8 1,382,105 + +0.0 1,382,113 - -0.1 1,382,114 - -3.2 1,382,125 + -3.0 1,382,266 + +0.4 1,382,266 + -0.1 1,382,266 + -0.5 1,382,268 + +0.3 1,382,272 - +2.4 1,382,274 - +0.5 1,382,324 + +0.6 1,382,336 + +1.5 1,382,358 - +1.7 1,382,401 + +0.6 1,382,414 + +0.7 1,382,414 + +3.7 1,382,414 + +3.2 1,382,414 + -0.9 1,382,414 + +1.0 1,382,422 - +0.4 1,382,422 - -1.5 1,382,583 + MPMX20_01325 0.11 -0.0 1,382,588 + MPMX20_01325 0.11 +1.0 1,382,588 + MPMX20_01325 0.11 +0.8 1,382,613 - MPMX20_01325 0.13 +0.8 1,382,705 - MPMX20_01325 0.17 +1.3 1,382,724 + MPMX20_01325 0.18 +1.7 1,382,776 - MPMX20_01325 0.21 +1.0 1,382,778 + MPMX20_01325 0.21 -1.0 1,382,816 + MPMX20_01325 0.23 -0.1 1,382,941 - MPMX20_01325 0.29 +1.1 1,382,978 + MPMX20_01325 0.31 +1.4 1,383,030 + MPMX20_01325 0.34 +1.0 1,383,030 + MPMX20_01325 0.34 -1.1 1,383,038 - MPMX20_01325 0.34 +3.7 1,383,038 - MPMX20_01325 0.34 -0.4 1,383,089 + MPMX20_01325 0.37 -1.0 1,383,136 + MPMX20_01325 0.39 +1.1 1,383,144 - MPMX20_01325 0.40 -0.8 1,383,144 - MPMX20_01325 0.40 +0.5 1,383,144 - MPMX20_01325 0.40 +0.4 1,383,190 + MPMX20_01325 0.42 -0.5 1,383,190 + MPMX20_01325 0.42 +1.8 1,383,236 + MPMX20_01325 0.45 +1.1 1,383,263 - MPMX20_01325 0.46 +0.8 1,383,265 + MPMX20_01325 0.46 -0.1 1,383,293 + MPMX20_01325 0.47 +0.3 1,383,339 + MPMX20_01325 0.50 +0.4 1,383,376 + MPMX20_01325 0.52 +1.0 1,383,396 + MPMX20_01325 0.53 +0.5 1,383,404 - MPMX20_01325 0.53 +1.9 1,383,404 - MPMX20_01325 0.53 +0.8 1,383,423 + MPMX20_01325 0.54 -0.8 1,383,502 - MPMX20_01325 0.58 -1.8 1,383,515 - MPMX20_01325 0.59 +0.5 1,383,589 - MPMX20_01325 0.63 -0.3 1,383,589 - MPMX20_01325 0.63 +1.2 1,383,766 + MPMX20_01325 0.72 -0.9 1,383,774 - MPMX20_01325 0.72 +0.1 1,383,797 - MPMX20_01325 0.73 -1.9 1,383,797 - MPMX20_01325 0.73 -1.1 1,383,869 + MPMX20_01325 0.77 +2.1 1,383,877 - MPMX20_01325 0.77 -1.0 1,383,901 - MPMX20_01325 0.79 +0.3 1,384,069 + MPMX20_01325 0.87 -1.3 1,384,077 + MPMX20_01325 0.88 +0.3 1,384,101 + MPMX20_01325 0.89 -0.1 1,384,122 + -0.1 1,384,140 - +0.5 1,384,170 + +0.7 1,384,179 + +0.2 1,384,204 + -0.4 1,384,230 + -0.2 1,384,276 + +0.1 1,384,303 - +0.4 1,384,325 + +1.0 1,384,330 + -0.4 1,384,330 + +0.1 1,384,332 - +1.7 1,384,333 - +0.7 1,384,337 + -0.5 1,384,345 - -0.0 1,384,345 - -0.6 1,384,409 + -1.0 1,384,410 + -1.2 1,384,410 + -1.6 1,384,417 + +0.3 1,384,418 + +0.8 1,384,418 - +1.3 1,384,453 + +0.1
Or see this region's nucleotide sequence