Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01323 and MPMX20_01324 are separated by 55 nucleotides MPMX20_01324 and MPMX20_01325 are separated by 326 nucleotides
MPMX20_01323: MPMX20_01323 - N-acetylglucosamine-6-phosphate deacetylase, at 1,380,036 to 1,381,184
_01323
MPMX20_01324: MPMX20_01324 - Glucosamine-6-phosphate deaminase, at 1,381,240 to 1,382,040
_01324
MPMX20_01325: MPMX20_01325 - PTS system N-acetylglucosamine-specific EIICBA component, at 1,382,367 to 1,384,316
_01325
Position (kb)
1381
1382
1383 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 1380.254 kb on + strand, within MPMX20_01323 at 1380.399 kb on - strand, within MPMX20_01323 at 1380.497 kb on - strand, within MPMX20_01323 at 1380.502 kb on - strand, within MPMX20_01323 at 1380.502 kb on - strand, within MPMX20_01323 at 1380.521 kb on + strand, within MPMX20_01323 at 1380.531 kb on + strand, within MPMX20_01323 at 1380.534 kb on - strand, within MPMX20_01323 at 1380.537 kb on - strand, within MPMX20_01323 at 1380.557 kb on - strand, within MPMX20_01323 at 1380.557 kb on - strand, within MPMX20_01323 at 1380.700 kb on - strand, within MPMX20_01323 at 1380.806 kb on - strand, within MPMX20_01323 at 1380.815 kb on + strand, within MPMX20_01323 at 1380.837 kb on + strand, within MPMX20_01323 at 1380.877 kb on - strand, within MPMX20_01323 at 1380.877 kb on - strand, within MPMX20_01323 at 1380.882 kb on + strand, within MPMX20_01323 at 1380.890 kb on - strand, within MPMX20_01323 at 1380.893 kb on - strand, within MPMX20_01323 at 1380.899 kb on - strand, within MPMX20_01323 at 1380.902 kb on + strand, within MPMX20_01323 at 1381.000 kb on + strand, within MPMX20_01323 at 1381.007 kb on + strand, within MPMX20_01323 at 1381.058 kb on + strand, within MPMX20_01323 at 1381.066 kb on - strand, within MPMX20_01323 at 1381.109 kb on - strand at 1381.153 kb on + strand at 1381.153 kb on + strand at 1381.153 kb on + strand at 1381.161 kb on - strand at 1381.161 kb on - strand at 1381.177 kb on - strand at 1381.367 kb on + strand, within MPMX20_01324 at 1381.367 kb on + strand, within MPMX20_01324 at 1381.375 kb on - strand, within MPMX20_01324 at 1381.408 kb on - strand, within MPMX20_01324 at 1381.483 kb on - strand, within MPMX20_01324 at 1381.492 kb on + strand, within MPMX20_01324 at 1381.552 kb on + strand, within MPMX20_01324 at 1381.589 kb on - strand, within MPMX20_01324 at 1381.589 kb on - strand, within MPMX20_01324 at 1381.634 kb on + strand, within MPMX20_01324 at 1381.642 kb on - strand, within MPMX20_01324 at 1381.781 kb on - strand, within MPMX20_01324 at 1381.808 kb on + strand, within MPMX20_01324 at 1381.838 kb on - strand, within MPMX20_01324 at 1381.845 kb on - strand, within MPMX20_01324 at 1381.853 kb on + strand, within MPMX20_01324 at 1381.866 kb on - strand, within MPMX20_01324 at 1381.973 kb on - strand at 1381.973 kb on - strand at 1381.973 kb on - strand at 1382.061 kb on + strand at 1382.061 kb on + strand at 1382.105 kb on + strand at 1382.105 kb on + strand at 1382.105 kb on + strand at 1382.113 kb on - strand at 1382.114 kb on - strand at 1382.125 kb on + strand at 1382.266 kb on + strand at 1382.266 kb on + strand at 1382.266 kb on + strand at 1382.268 kb on + strand at 1382.272 kb on - strand at 1382.274 kb on - strand at 1382.324 kb on + strand at 1382.336 kb on + strand at 1382.358 kb on - strand at 1382.401 kb on + strand at 1382.414 kb on + strand at 1382.414 kb on + strand at 1382.414 kb on + strand at 1382.414 kb on + strand at 1382.414 kb on + strand at 1382.422 kb on - strand at 1382.422 kb on - strand at 1382.583 kb on + strand, within MPMX20_01325 at 1382.588 kb on + strand, within MPMX20_01325 at 1382.588 kb on + strand, within MPMX20_01325 at 1382.613 kb on - strand, within MPMX20_01325 at 1382.705 kb on - strand, within MPMX20_01325 at 1382.724 kb on + strand, within MPMX20_01325 at 1382.776 kb on - strand, within MPMX20_01325 at 1382.778 kb on + strand, within MPMX20_01325 at 1382.816 kb on + strand, within MPMX20_01325 at 1382.941 kb on - strand, within MPMX20_01325 at 1382.978 kb on + strand, within MPMX20_01325 at 1383.030 kb on + strand, within MPMX20_01325 at 1383.030 kb on + strand, within MPMX20_01325 at 1383.038 kb on - strand, within MPMX20_01325 at 1383.038 kb on - strand, within MPMX20_01325
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 1,380,254 + MPMX20_01323 0.19 -1.4 1,380,399 - MPMX20_01323 0.32 +1.5 1,380,497 - MPMX20_01323 0.40 -1.0 1,380,502 - MPMX20_01323 0.41 +0.5 1,380,502 - MPMX20_01323 0.41 -1.2 1,380,521 + MPMX20_01323 0.42 -1.0 1,380,531 + MPMX20_01323 0.43 +0.5 1,380,534 - MPMX20_01323 0.43 +1.9 1,380,537 - MPMX20_01323 0.44 +0.8 1,380,557 - MPMX20_01323 0.45 +0.4 1,380,557 - MPMX20_01323 0.45 +0.4 1,380,700 - MPMX20_01323 0.58 +0.6 1,380,806 - MPMX20_01323 0.67 -0.8 1,380,815 + MPMX20_01323 0.68 -1.5 1,380,837 + MPMX20_01323 0.70 -0.1 1,380,877 - MPMX20_01323 0.73 -2.1 1,380,877 - MPMX20_01323 0.73 -0.2 1,380,882 + MPMX20_01323 0.74 -1.3 1,380,890 - MPMX20_01323 0.74 +0.7 1,380,893 - MPMX20_01323 0.75 -1.6 1,380,899 - MPMX20_01323 0.75 +0.2 1,380,902 + MPMX20_01323 0.75 -1.5 1,381,000 + MPMX20_01323 0.84 -0.1 1,381,007 + MPMX20_01323 0.85 -0.3 1,381,058 + MPMX20_01323 0.89 -0.6 1,381,066 - MPMX20_01323 0.90 +0.4 1,381,109 - -1.7 1,381,153 + -0.9 1,381,153 + +3.3 1,381,153 + -0.9 1,381,161 - -0.5 1,381,161 - -0.3 1,381,177 - -0.3 1,381,367 + MPMX20_01324 0.16 -4.0 1,381,367 + MPMX20_01324 0.16 -4.4 1,381,375 - MPMX20_01324 0.17 -3.1 1,381,408 - MPMX20_01324 0.21 -4.8 1,381,483 - MPMX20_01324 0.30 -0.9 1,381,492 + MPMX20_01324 0.31 -3.6 1,381,552 + MPMX20_01324 0.39 -0.9 1,381,589 - MPMX20_01324 0.44 -2.4 1,381,589 - MPMX20_01324 0.44 -1.8 1,381,634 + MPMX20_01324 0.49 -4.5 1,381,642 - MPMX20_01324 0.50 -4.5 1,381,781 - MPMX20_01324 0.68 -0.3 1,381,808 + MPMX20_01324 0.71 -4.0 1,381,838 - MPMX20_01324 0.75 -3.5 1,381,845 - MPMX20_01324 0.76 -4.9 1,381,853 + MPMX20_01324 0.77 -1.1 1,381,866 - MPMX20_01324 0.78 -4.5 1,381,973 - -3.6 1,381,973 - -0.6 1,381,973 - -2.9 1,382,061 + -2.1 1,382,061 + -2.4 1,382,105 + -2.0 1,382,105 + -1.8 1,382,105 + +0.0 1,382,113 - -0.1 1,382,114 - -3.2 1,382,125 + -3.0 1,382,266 + +0.4 1,382,266 + -0.1 1,382,266 + -0.5 1,382,268 + +0.3 1,382,272 - +2.4 1,382,274 - +0.5 1,382,324 + +0.6 1,382,336 + +1.5 1,382,358 - +1.7 1,382,401 + +0.6 1,382,414 + +0.7 1,382,414 + +3.7 1,382,414 + +3.2 1,382,414 + -0.9 1,382,414 + +1.0 1,382,422 - +0.4 1,382,422 - -1.5 1,382,583 + MPMX20_01325 0.11 -0.0 1,382,588 + MPMX20_01325 0.11 +1.0 1,382,588 + MPMX20_01325 0.11 +0.8 1,382,613 - MPMX20_01325 0.13 +0.8 1,382,705 - MPMX20_01325 0.17 +1.3 1,382,724 + MPMX20_01325 0.18 +1.7 1,382,776 - MPMX20_01325 0.21 +1.0 1,382,778 + MPMX20_01325 0.21 -1.0 1,382,816 + MPMX20_01325 0.23 -0.1 1,382,941 - MPMX20_01325 0.29 +1.1 1,382,978 + MPMX20_01325 0.31 +1.4 1,383,030 + MPMX20_01325 0.34 +1.0 1,383,030 + MPMX20_01325 0.34 -1.1 1,383,038 - MPMX20_01325 0.34 +3.7 1,383,038 - MPMX20_01325 0.34 -0.4
Or see this region's nucleotide sequence