Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01324

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01323 and MPMX20_01324 are separated by 55 nucleotidesMPMX20_01324 and MPMX20_01325 are separated by 326 nucleotides MPMX20_01323: MPMX20_01323 - N-acetylglucosamine-6-phosphate deacetylase, at 1,380,036 to 1,381,184 _01323 MPMX20_01324: MPMX20_01324 - Glucosamine-6-phosphate deaminase, at 1,381,240 to 1,382,040 _01324 MPMX20_01325: MPMX20_01325 - PTS system N-acetylglucosamine-specific EIICBA component, at 1,382,367 to 1,384,316 _01325 Position (kb) 1381 1382 1383Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1380.254 kb on + strand, within MPMX20_01323at 1380.399 kb on - strand, within MPMX20_01323at 1380.497 kb on - strand, within MPMX20_01323at 1380.502 kb on - strand, within MPMX20_01323at 1380.502 kb on - strand, within MPMX20_01323at 1380.521 kb on + strand, within MPMX20_01323at 1380.531 kb on + strand, within MPMX20_01323at 1380.534 kb on - strand, within MPMX20_01323at 1380.537 kb on - strand, within MPMX20_01323at 1380.557 kb on - strand, within MPMX20_01323at 1380.557 kb on - strand, within MPMX20_01323at 1380.700 kb on - strand, within MPMX20_01323at 1380.806 kb on - strand, within MPMX20_01323at 1380.815 kb on + strand, within MPMX20_01323at 1380.837 kb on + strand, within MPMX20_01323at 1380.877 kb on - strand, within MPMX20_01323at 1380.877 kb on - strand, within MPMX20_01323at 1380.882 kb on + strand, within MPMX20_01323at 1380.890 kb on - strand, within MPMX20_01323at 1380.893 kb on - strand, within MPMX20_01323at 1380.899 kb on - strand, within MPMX20_01323at 1380.902 kb on + strand, within MPMX20_01323at 1381.000 kb on + strand, within MPMX20_01323at 1381.007 kb on + strand, within MPMX20_01323at 1381.058 kb on + strand, within MPMX20_01323at 1381.066 kb on - strand, within MPMX20_01323at 1381.109 kb on - strandat 1381.153 kb on + strandat 1381.153 kb on + strandat 1381.153 kb on + strandat 1381.161 kb on - strandat 1381.161 kb on - strandat 1381.177 kb on - strandat 1381.367 kb on + strand, within MPMX20_01324at 1381.367 kb on + strand, within MPMX20_01324at 1381.375 kb on - strand, within MPMX20_01324at 1381.408 kb on - strand, within MPMX20_01324at 1381.483 kb on - strand, within MPMX20_01324at 1381.492 kb on + strand, within MPMX20_01324at 1381.552 kb on + strand, within MPMX20_01324at 1381.589 kb on - strand, within MPMX20_01324at 1381.589 kb on - strand, within MPMX20_01324at 1381.634 kb on + strand, within MPMX20_01324at 1381.642 kb on - strand, within MPMX20_01324at 1381.781 kb on - strand, within MPMX20_01324at 1381.808 kb on + strand, within MPMX20_01324at 1381.838 kb on - strand, within MPMX20_01324at 1381.845 kb on - strand, within MPMX20_01324at 1381.853 kb on + strand, within MPMX20_01324at 1381.866 kb on - strand, within MPMX20_01324at 1381.973 kb on - strandat 1381.973 kb on - strandat 1381.973 kb on - strandat 1382.061 kb on + strandat 1382.061 kb on + strandat 1382.105 kb on + strandat 1382.105 kb on + strandat 1382.105 kb on + strandat 1382.113 kb on - strandat 1382.114 kb on - strandat 1382.125 kb on + strandat 1382.266 kb on + strandat 1382.266 kb on + strandat 1382.266 kb on + strandat 1382.268 kb on + strandat 1382.272 kb on - strandat 1382.274 kb on - strandat 1382.324 kb on + strandat 1382.336 kb on + strandat 1382.358 kb on - strandat 1382.401 kb on + strandat 1382.414 kb on + strandat 1382.414 kb on + strandat 1382.414 kb on + strandat 1382.414 kb on + strandat 1382.414 kb on + strandat 1382.422 kb on - strandat 1382.422 kb on - strandat 1382.583 kb on + strand, within MPMX20_01325at 1382.588 kb on + strand, within MPMX20_01325at 1382.588 kb on + strand, within MPMX20_01325at 1382.613 kb on - strand, within MPMX20_01325at 1382.705 kb on - strand, within MPMX20_01325at 1382.724 kb on + strand, within MPMX20_01325at 1382.776 kb on - strand, within MPMX20_01325at 1382.778 kb on + strand, within MPMX20_01325at 1382.816 kb on + strand, within MPMX20_01325at 1382.941 kb on - strand, within MPMX20_01325at 1382.978 kb on + strand, within MPMX20_01325at 1383.030 kb on + strand, within MPMX20_01325at 1383.030 kb on + strand, within MPMX20_01325at 1383.038 kb on - strand, within MPMX20_01325at 1383.038 kb on - strand, within MPMX20_01325

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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1,380,254 + MPMX20_01323 0.19 -1.4
1,380,399 - MPMX20_01323 0.32 +1.5
1,380,497 - MPMX20_01323 0.40 -1.0
1,380,502 - MPMX20_01323 0.41 +0.5
1,380,502 - MPMX20_01323 0.41 -1.2
1,380,521 + MPMX20_01323 0.42 -1.0
1,380,531 + MPMX20_01323 0.43 +0.5
1,380,534 - MPMX20_01323 0.43 +1.9
1,380,537 - MPMX20_01323 0.44 +0.8
1,380,557 - MPMX20_01323 0.45 +0.4
1,380,557 - MPMX20_01323 0.45 +0.4
1,380,700 - MPMX20_01323 0.58 +0.6
1,380,806 - MPMX20_01323 0.67 -0.8
1,380,815 + MPMX20_01323 0.68 -1.5
1,380,837 + MPMX20_01323 0.70 -0.1
1,380,877 - MPMX20_01323 0.73 -2.1
1,380,877 - MPMX20_01323 0.73 -0.2
1,380,882 + MPMX20_01323 0.74 -1.3
1,380,890 - MPMX20_01323 0.74 +0.7
1,380,893 - MPMX20_01323 0.75 -1.6
1,380,899 - MPMX20_01323 0.75 +0.2
1,380,902 + MPMX20_01323 0.75 -1.5
1,381,000 + MPMX20_01323 0.84 -0.1
1,381,007 + MPMX20_01323 0.85 -0.3
1,381,058 + MPMX20_01323 0.89 -0.6
1,381,066 - MPMX20_01323 0.90 +0.4
1,381,109 - -1.7
1,381,153 + -0.9
1,381,153 + +3.3
1,381,153 + -0.9
1,381,161 - -0.5
1,381,161 - -0.3
1,381,177 - -0.3
1,381,367 + MPMX20_01324 0.16 -4.0
1,381,367 + MPMX20_01324 0.16 -4.4
1,381,375 - MPMX20_01324 0.17 -3.1
1,381,408 - MPMX20_01324 0.21 -4.8
1,381,483 - MPMX20_01324 0.30 -0.9
1,381,492 + MPMX20_01324 0.31 -3.6
1,381,552 + MPMX20_01324 0.39 -0.9
1,381,589 - MPMX20_01324 0.44 -2.4
1,381,589 - MPMX20_01324 0.44 -1.8
1,381,634 + MPMX20_01324 0.49 -4.5
1,381,642 - MPMX20_01324 0.50 -4.5
1,381,781 - MPMX20_01324 0.68 -0.3
1,381,808 + MPMX20_01324 0.71 -4.0
1,381,838 - MPMX20_01324 0.75 -3.5
1,381,845 - MPMX20_01324 0.76 -4.9
1,381,853 + MPMX20_01324 0.77 -1.1
1,381,866 - MPMX20_01324 0.78 -4.5
1,381,973 - -3.6
1,381,973 - -0.6
1,381,973 - -2.9
1,382,061 + -2.1
1,382,061 + -2.4
1,382,105 + -2.0
1,382,105 + -1.8
1,382,105 + +0.0
1,382,113 - -0.1
1,382,114 - -3.2
1,382,125 + -3.0
1,382,266 + +0.4
1,382,266 + -0.1
1,382,266 + -0.5
1,382,268 + +0.3
1,382,272 - +2.4
1,382,274 - +0.5
1,382,324 + +0.6
1,382,336 + +1.5
1,382,358 - +1.7
1,382,401 + +0.6
1,382,414 + +0.7
1,382,414 + +3.7
1,382,414 + +3.2
1,382,414 + -0.9
1,382,414 + +1.0
1,382,422 - +0.4
1,382,422 - -1.5
1,382,583 + MPMX20_01325 0.11 -0.0
1,382,588 + MPMX20_01325 0.11 +1.0
1,382,588 + MPMX20_01325 0.11 +0.8
1,382,613 - MPMX20_01325 0.13 +0.8
1,382,705 - MPMX20_01325 0.17 +1.3
1,382,724 + MPMX20_01325 0.18 +1.7
1,382,776 - MPMX20_01325 0.21 +1.0
1,382,778 + MPMX20_01325 0.21 -1.0
1,382,816 + MPMX20_01325 0.23 -0.1
1,382,941 - MPMX20_01325 0.29 +1.1
1,382,978 + MPMX20_01325 0.31 +1.4
1,383,030 + MPMX20_01325 0.34 +1.0
1,383,030 + MPMX20_01325 0.34 -1.1
1,383,038 - MPMX20_01325 0.34 +3.7
1,383,038 - MPMX20_01325 0.34 -0.4

Or see this region's nucleotide sequence