Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03667

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03666 and MPMX20_03667 are separated by 65 nucleotidesMPMX20_03667 and MPMX20_03668 are separated by 112 nucleotidesMPMX20_03668 and MPMX20_03669 are separated by 57 nucleotides MPMX20_03666: MPMX20_03666 - Serine transporter, at 3,861,058 to 3,862,353 _03666 MPMX20_03667: MPMX20_03667 - L-serine dehydratase 2, at 3,862,419 to 3,863,786 _03667 MPMX20_03668: MPMX20_03668 - Flap endonuclease Xni, at 3,863,899 to 3,864,654 _03668 MPMX20_03669: MPMX20_03669 - Ribosomal RNA large subunit methyltransferase M, at 3,864,712 to 3,865,812 _03669 Position (kb) 3862 3863 3864Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3861.435 kb on - strand, within MPMX20_03666at 3861.442 kb on - strand, within MPMX20_03666at 3861.515 kb on - strand, within MPMX20_03666at 3861.626 kb on - strand, within MPMX20_03666at 3861.651 kb on - strand, within MPMX20_03666at 3861.651 kb on - strand, within MPMX20_03666at 3861.678 kb on + strand, within MPMX20_03666at 3861.686 kb on - strand, within MPMX20_03666at 3861.719 kb on + strand, within MPMX20_03666at 3861.769 kb on + strand, within MPMX20_03666at 3861.839 kb on + strand, within MPMX20_03666at 3861.840 kb on - strand, within MPMX20_03666at 3861.860 kb on + strand, within MPMX20_03666at 3861.860 kb on + strand, within MPMX20_03666at 3861.865 kb on + strand, within MPMX20_03666at 3861.873 kb on - strand, within MPMX20_03666at 3862.013 kb on + strand, within MPMX20_03666at 3862.028 kb on + strand, within MPMX20_03666at 3862.036 kb on + strand, within MPMX20_03666at 3862.038 kb on - strand, within MPMX20_03666at 3862.044 kb on - strand, within MPMX20_03666at 3862.082 kb on + strand, within MPMX20_03666at 3862.083 kb on - strand, within MPMX20_03666at 3862.119 kb on + strand, within MPMX20_03666at 3862.123 kb on + strand, within MPMX20_03666at 3862.127 kb on - strand, within MPMX20_03666at 3862.136 kb on + strand, within MPMX20_03666at 3862.230 kb on - strandat 3862.246 kb on + strandat 3862.271 kb on - strandat 3862.326 kb on + strandat 3862.326 kb on + strandat 3862.334 kb on - strandat 3862.336 kb on + strandat 3862.348 kb on - strandat 3862.369 kb on + strandat 3862.416 kb on + strandat 3862.510 kb on - strandat 3862.510 kb on - strandat 3862.563 kb on + strand, within MPMX20_03667at 3862.587 kb on + strand, within MPMX20_03667at 3862.587 kb on + strand, within MPMX20_03667at 3862.637 kb on - strand, within MPMX20_03667at 3863.018 kb on - strand, within MPMX20_03667at 3863.040 kb on + strand, within MPMX20_03667at 3863.042 kb on + strand, within MPMX20_03667at 3863.050 kb on - strand, within MPMX20_03667at 3863.266 kb on - strand, within MPMX20_03667at 3863.273 kb on + strand, within MPMX20_03667at 3863.281 kb on - strand, within MPMX20_03667at 3863.304 kb on + strand, within MPMX20_03667at 3863.309 kb on + strand, within MPMX20_03667at 3863.494 kb on + strand, within MPMX20_03667at 3863.510 kb on + strand, within MPMX20_03667at 3863.510 kb on + strand, within MPMX20_03667at 3863.510 kb on + strand, within MPMX20_03667at 3863.510 kb on + strand, within MPMX20_03667at 3863.512 kb on + strand, within MPMX20_03667at 3863.518 kb on - strand, within MPMX20_03667at 3863.553 kb on - strand, within MPMX20_03667at 3863.558 kb on - strand, within MPMX20_03667at 3863.579 kb on + strand, within MPMX20_03667at 3863.627 kb on + strand, within MPMX20_03667at 3863.635 kb on - strand, within MPMX20_03667at 3863.654 kb on - strandat 3863.659 kb on + strandat 3863.725 kb on + strandat 3863.868 kb on - strandat 3863.935 kb on - strandat 3863.964 kb on - strandat 3863.964 kb on - strandat 3863.976 kb on + strand, within MPMX20_03668at 3864.057 kb on + strand, within MPMX20_03668at 3864.158 kb on + strand, within MPMX20_03668at 3864.158 kb on + strand, within MPMX20_03668at 3864.166 kb on - strand, within MPMX20_03668at 3864.166 kb on - strand, within MPMX20_03668at 3864.166 kb on - strand, within MPMX20_03668at 3864.166 kb on - strand, within MPMX20_03668at 3864.166 kb on - strand, within MPMX20_03668at 3864.166 kb on - strand, within MPMX20_03668at 3864.182 kb on + strand, within MPMX20_03668at 3864.188 kb on - strand, within MPMX20_03668at 3864.188 kb on - strand, within MPMX20_03668at 3864.188 kb on - strand, within MPMX20_03668at 3864.190 kb on - strand, within MPMX20_03668at 3864.198 kb on - strand, within MPMX20_03668at 3864.198 kb on - strand, within MPMX20_03668at 3864.341 kb on + strand, within MPMX20_03668at 3864.349 kb on - strand, within MPMX20_03668at 3864.369 kb on + strand, within MPMX20_03668at 3864.401 kb on + strand, within MPMX20_03668at 3864.409 kb on - strand, within MPMX20_03668at 3864.409 kb on - strand, within MPMX20_03668at 3864.433 kb on - strand, within MPMX20_03668at 3864.462 kb on + strand, within MPMX20_03668at 3864.462 kb on + strand, within MPMX20_03668at 3864.502 kb on - strand, within MPMX20_03668at 3864.557 kb on + strand, within MPMX20_03668at 3864.579 kb on - strandat 3864.699 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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3,861,435 - MPMX20_03666 0.29 +0.6
3,861,442 - MPMX20_03666 0.30 -0.2
3,861,515 - MPMX20_03666 0.35 -0.8
3,861,626 - MPMX20_03666 0.44 +0.4
3,861,651 - MPMX20_03666 0.46 -0.3
3,861,651 - MPMX20_03666 0.46 +0.5
3,861,678 + MPMX20_03666 0.48 +1.4
3,861,686 - MPMX20_03666 0.48 +0.4
3,861,719 + MPMX20_03666 0.51 +0.8
3,861,769 + MPMX20_03666 0.55 -0.8
3,861,839 + MPMX20_03666 0.60 +0.9
3,861,840 - MPMX20_03666 0.60 -0.4
3,861,860 + MPMX20_03666 0.62 -0.4
3,861,860 + MPMX20_03666 0.62 -1.5
3,861,865 + MPMX20_03666 0.62 +0.4
3,861,873 - MPMX20_03666 0.63 -0.2
3,862,013 + MPMX20_03666 0.74 -0.6
3,862,028 + MPMX20_03666 0.75 -0.5
3,862,036 + MPMX20_03666 0.75 +0.4
3,862,038 - MPMX20_03666 0.76 -0.3
3,862,044 - MPMX20_03666 0.76 +0.4
3,862,082 + MPMX20_03666 0.79 +0.0
3,862,083 - MPMX20_03666 0.79 +0.5
3,862,119 + MPMX20_03666 0.82 -0.7
3,862,123 + MPMX20_03666 0.82 +1.0
3,862,127 - MPMX20_03666 0.82 -1.6
3,862,136 + MPMX20_03666 0.83 +0.2
3,862,230 - +0.7
3,862,246 + +0.7
3,862,271 - +0.6
3,862,326 + -1.2
3,862,326 + -0.4
3,862,334 - +0.9
3,862,336 + -2.0
3,862,348 - -0.9
3,862,369 + +0.9
3,862,416 + -1.4
3,862,510 - -0.1
3,862,510 - -0.4
3,862,563 + MPMX20_03667 0.11 +0.8
3,862,587 + MPMX20_03667 0.12 +0.0
3,862,587 + MPMX20_03667 0.12 -2.0
3,862,637 - MPMX20_03667 0.16 +1.1
3,863,018 - MPMX20_03667 0.44 +0.5
3,863,040 + MPMX20_03667 0.45 +2.0
3,863,042 + MPMX20_03667 0.46 +1.3
3,863,050 - MPMX20_03667 0.46 +0.4
3,863,266 - MPMX20_03667 0.62 -1.1
3,863,273 + MPMX20_03667 0.62 -0.4
3,863,281 - MPMX20_03667 0.63 +0.4
3,863,304 + MPMX20_03667 0.65 +0.9
3,863,309 + MPMX20_03667 0.65 -0.9
3,863,494 + MPMX20_03667 0.79 +0.7
3,863,510 + MPMX20_03667 0.80 +2.5
3,863,510 + MPMX20_03667 0.80 +2.0
3,863,510 + MPMX20_03667 0.80 +0.5
3,863,510 + MPMX20_03667 0.80 +2.7
3,863,512 + MPMX20_03667 0.80 +0.4
3,863,518 - MPMX20_03667 0.80 +1.3
3,863,553 - MPMX20_03667 0.83 -0.1
3,863,558 - MPMX20_03667 0.83 -1.3
3,863,579 + MPMX20_03667 0.85 +2.2
3,863,627 + MPMX20_03667 0.88 -2.6
3,863,635 - MPMX20_03667 0.89 +0.2
3,863,654 - +1.1
3,863,659 + -0.5
3,863,725 + +0.5
3,863,868 - -0.4
3,863,935 - -0.5
3,863,964 - -1.1
3,863,964 - -0.8
3,863,976 + MPMX20_03668 0.10 -3.3
3,864,057 + MPMX20_03668 0.21 +1.1
3,864,158 + MPMX20_03668 0.34 +0.7
3,864,158 + MPMX20_03668 0.34 -0.3
3,864,166 - MPMX20_03668 0.35 -0.5
3,864,166 - MPMX20_03668 0.35 -0.2
3,864,166 - MPMX20_03668 0.35 -0.7
3,864,166 - MPMX20_03668 0.35 -0.5
3,864,166 - MPMX20_03668 0.35 +1.5
3,864,166 - MPMX20_03668 0.35 +0.6
3,864,182 + MPMX20_03668 0.37 +1.5
3,864,188 - MPMX20_03668 0.38 -0.2
3,864,188 - MPMX20_03668 0.38 +0.8
3,864,188 - MPMX20_03668 0.38 +1.3
3,864,190 - MPMX20_03668 0.38 +0.3
3,864,198 - MPMX20_03668 0.40 +1.4
3,864,198 - MPMX20_03668 0.40 -0.8
3,864,341 + MPMX20_03668 0.58 +0.2
3,864,349 - MPMX20_03668 0.60 +0.3
3,864,369 + MPMX20_03668 0.62 -1.5
3,864,401 + MPMX20_03668 0.66 +0.4
3,864,409 - MPMX20_03668 0.67 +0.6
3,864,409 - MPMX20_03668 0.67 +0.2
3,864,433 - MPMX20_03668 0.71 +2.7
3,864,462 + MPMX20_03668 0.74 -0.1
3,864,462 + MPMX20_03668 0.74 -1.1
3,864,502 - MPMX20_03668 0.80 -0.1
3,864,557 + MPMX20_03668 0.87 +0.5
3,864,579 - -1.8
3,864,699 + -0.7

Or see this region's nucleotide sequence