Experiment: Putrescine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04490 and MPMX20_04491 are separated by 341 nucleotides MPMX20_04491 and MPMX20_04492 are separated by 144 nucleotides
MPMX20_04490: MPMX20_04490 - Transcription termination factor Rho, at 4,694,814 to 4,696,073
_04490
MPMX20_04491: MPMX20_04491 - Thioredoxin 1, at 4,696,415 to 4,696,744
_04491
MPMX20_04492: MPMX20_04492 - ATP-dependent RNA helicase RhlB, at 4,696,889 to 4,698,154
_04492
Position (kb)
4696
4697 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4696.080 kb on - strand at 4696.158 kb on - strand at 4696.173 kb on - strand at 4696.173 kb on - strand at 4696.246 kb on - strand at 4696.380 kb on - strand at 4696.418 kb on + strand at 4696.421 kb on - strand at 4696.431 kb on - strand at 4696.452 kb on + strand, within MPMX20_04491 at 4696.452 kb on + strand, within MPMX20_04491 at 4696.452 kb on + strand, within MPMX20_04491 at 4696.460 kb on - strand, within MPMX20_04491 at 4696.460 kb on - strand, within MPMX20_04491 at 4696.460 kb on - strand, within MPMX20_04491 at 4696.460 kb on - strand, within MPMX20_04491 at 4696.504 kb on + strand, within MPMX20_04491 at 4696.563 kb on + strand, within MPMX20_04491 at 4696.646 kb on + strand, within MPMX20_04491 at 4696.649 kb on - strand, within MPMX20_04491 at 4696.672 kb on + strand, within MPMX20_04491 at 4696.672 kb on + strand, within MPMX20_04491 at 4696.672 kb on + strand, within MPMX20_04491 at 4696.686 kb on + strand, within MPMX20_04491 at 4696.686 kb on + strand, within MPMX20_04491 at 4696.686 kb on + strand, within MPMX20_04491 at 4696.694 kb on - strand, within MPMX20_04491 at 4696.694 kb on - strand, within MPMX20_04491 at 4696.702 kb on + strand, within MPMX20_04491 at 4696.758 kb on + strand at 4696.759 kb on + strand at 4696.766 kb on - strand at 4696.766 kb on - strand at 4696.786 kb on + strand at 4696.786 kb on - strand at 4696.788 kb on + strand at 4696.788 kb on + strand at 4696.788 kb on + strand at 4696.788 kb on + strand at 4696.796 kb on - strand at 4696.796 kb on - strand at 4696.798 kb on - strand at 4696.866 kb on - strand at 4696.878 kb on - strand at 4696.878 kb on - strand at 4696.996 kb on + strand at 4697.004 kb on - strand at 4697.008 kb on + strand at 4697.014 kb on - strand at 4697.029 kb on + strand, within MPMX20_04492 at 4697.029 kb on + strand, within MPMX20_04492 at 4697.032 kb on - strand, within MPMX20_04492 at 4697.039 kb on + strand, within MPMX20_04492 at 4697.047 kb on - strand, within MPMX20_04492 at 4697.047 kb on - strand, within MPMX20_04492 at 4697.138 kb on - strand, within MPMX20_04492 at 4697.152 kb on + strand, within MPMX20_04492 at 4697.152 kb on + strand, within MPMX20_04492 at 4697.180 kb on + strand, within MPMX20_04492 at 4697.188 kb on - strand, within MPMX20_04492 at 4697.188 kb on - strand, within MPMX20_04492 at 4697.209 kb on + strand, within MPMX20_04492 at 4697.239 kb on + strand, within MPMX20_04492 at 4697.247 kb on - strand, within MPMX20_04492 at 4697.331 kb on + strand, within MPMX20_04492 at 4697.346 kb on + strand, within MPMX20_04492 at 4697.346 kb on + strand, within MPMX20_04492 at 4697.353 kb on + strand, within MPMX20_04492 at 4697.353 kb on + strand, within MPMX20_04492 at 4697.476 kb on + strand, within MPMX20_04492 at 4697.583 kb on + strand, within MPMX20_04492 at 4697.596 kb on - strand, within MPMX20_04492 at 4697.647 kb on + strand, within MPMX20_04492 at 4697.727 kb on + strand, within MPMX20_04492
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (C) remove 4,696,080 - +1.1 4,696,158 - +1.3 4,696,173 - -2.9 4,696,173 - +0.5 4,696,246 - +0.1 4,696,380 - +1.5 4,696,418 + -1.9 4,696,421 - +0.0 4,696,431 - +0.3 4,696,452 + MPMX20_04491 0.11 -0.4 4,696,452 + MPMX20_04491 0.11 -2.0 4,696,452 + MPMX20_04491 0.11 +1.4 4,696,460 - MPMX20_04491 0.14 -1.9 4,696,460 - MPMX20_04491 0.14 -0.9 4,696,460 - MPMX20_04491 0.14 -1.4 4,696,460 - MPMX20_04491 0.14 -1.2 4,696,504 + MPMX20_04491 0.27 +0.8 4,696,563 + MPMX20_04491 0.45 -2.0 4,696,646 + MPMX20_04491 0.70 -2.6 4,696,649 - MPMX20_04491 0.71 -2.5 4,696,672 + MPMX20_04491 0.78 -2.5 4,696,672 + MPMX20_04491 0.78 -2.1 4,696,672 + MPMX20_04491 0.78 -1.5 4,696,686 + MPMX20_04491 0.82 -0.6 4,696,686 + MPMX20_04491 0.82 +1.8 4,696,686 + MPMX20_04491 0.82 -1.3 4,696,694 - MPMX20_04491 0.85 +2.7 4,696,694 - MPMX20_04491 0.85 +0.1 4,696,702 + MPMX20_04491 0.87 -1.0 4,696,758 + +0.8 4,696,759 + -2.3 4,696,766 - -0.4 4,696,766 - +0.1 4,696,786 + -1.0 4,696,786 - +0.1 4,696,788 + -0.6 4,696,788 + +0.9 4,696,788 + -1.4 4,696,788 + -3.0 4,696,796 - +0.5 4,696,796 - +3.2 4,696,798 - +1.2 4,696,866 - -3.0 4,696,878 - -1.3 4,696,878 - +0.1 4,696,996 + +1.7 4,697,004 - -1.8 4,697,008 + +1.0 4,697,014 - -1.5 4,697,029 + MPMX20_04492 0.11 -2.4 4,697,029 + MPMX20_04492 0.11 -1.4 4,697,032 - MPMX20_04492 0.11 +0.3 4,697,039 + MPMX20_04492 0.12 +0.3 4,697,047 - MPMX20_04492 0.12 -0.9 4,697,047 - MPMX20_04492 0.12 -0.8 4,697,138 - MPMX20_04492 0.20 -2.2 4,697,152 + MPMX20_04492 0.21 +2.2 4,697,152 + MPMX20_04492 0.21 +1.7 4,697,180 + MPMX20_04492 0.23 -0.7 4,697,188 - MPMX20_04492 0.24 +2.1 4,697,188 - MPMX20_04492 0.24 -0.7 4,697,209 + MPMX20_04492 0.25 -1.7 4,697,239 + MPMX20_04492 0.28 +1.4 4,697,247 - MPMX20_04492 0.28 +2.4 4,697,331 + MPMX20_04492 0.35 -0.6 4,697,346 + MPMX20_04492 0.36 -1.1 4,697,346 + MPMX20_04492 0.36 -2.5 4,697,353 + MPMX20_04492 0.37 +2.7 4,697,353 + MPMX20_04492 0.37 -0.0 4,697,476 + MPMX20_04492 0.46 -0.4 4,697,583 + MPMX20_04492 0.55 +1.6 4,697,596 - MPMX20_04492 0.56 -2.4 4,697,647 + MPMX20_04492 0.60 -0.9 4,697,727 + MPMX20_04492 0.66 +1.5
Or see this region's nucleotide sequence