Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04253

Experiment: Putrescine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04251 and MPMX20_04252 overlap by 4 nucleotidesMPMX20_04252 and MPMX20_04253 overlap by 8 nucleotidesMPMX20_04253 and MPMX20_04254 are separated by 9 nucleotidesMPMX20_04254 and MPMX20_04255 overlap by 1 nucleotides MPMX20_04251: MPMX20_04251 - hypothetical protein, at 4,434,407 to 4,435,210 _04251 MPMX20_04252: MPMX20_04252 - Malonyl-S-ACP:biotin-protein carboxyltransferase MADC, at 4,435,207 to 4,436,040 _04252 MPMX20_04253: MPMX20_04253 - Malonate decarboxylase acyl carrier protein, at 4,436,033 to 4,436,332 _04253 MPMX20_04254: MPMX20_04254 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase, at 4,436,342 to 4,437,199 _04254 MPMX20_04255: MPMX20_04255 - Acetyl-S-ACP:malonate ACP transferase, at 4,437,199 to 4,438,854 _04255 Position (kb) 4436 4437Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4435.129 kb on + strand, within MPMX20_04251at 4435.137 kb on - strandat 4435.137 kb on - strandat 4435.137 kb on - strandat 4435.189 kb on + strandat 4435.232 kb on + strandat 4435.240 kb on - strandat 4435.240 kb on - strandat 4435.240 kb on - strandat 4435.247 kb on + strandat 4435.257 kb on + strandat 4435.257 kb on + strandat 4435.257 kb on + strandat 4435.257 kb on + strandat 4435.379 kb on + strand, within MPMX20_04252at 4435.462 kb on + strand, within MPMX20_04252at 4435.482 kb on - strand, within MPMX20_04252at 4435.497 kb on + strand, within MPMX20_04252at 4435.505 kb on - strand, within MPMX20_04252at 4435.505 kb on - strand, within MPMX20_04252at 4435.505 kb on - strand, within MPMX20_04252at 4435.505 kb on - strand, within MPMX20_04252at 4435.505 kb on - strand, within MPMX20_04252at 4435.505 kb on - strand, within MPMX20_04252at 4435.505 kb on - strand, within MPMX20_04252at 4435.554 kb on + strand, within MPMX20_04252at 4435.625 kb on - strand, within MPMX20_04252at 4435.627 kb on + strand, within MPMX20_04252at 4435.640 kb on - strand, within MPMX20_04252at 4435.822 kb on - strand, within MPMX20_04252at 4435.844 kb on + strand, within MPMX20_04252at 4435.902 kb on + strand, within MPMX20_04252at 4435.904 kb on + strand, within MPMX20_04252at 4435.907 kb on - strand, within MPMX20_04252at 4436.040 kb on + strandat 4436.042 kb on + strandat 4436.042 kb on + strandat 4436.043 kb on - strandat 4436.049 kb on - strandat 4436.050 kb on - strandat 4436.144 kb on + strand, within MPMX20_04253at 4436.268 kb on + strand, within MPMX20_04253at 4436.347 kb on + strandat 4436.352 kb on + strandat 4436.428 kb on - strand, within MPMX20_04254at 4436.428 kb on - strand, within MPMX20_04254at 4436.453 kb on + strand, within MPMX20_04254at 4436.462 kb on + strand, within MPMX20_04254at 4436.501 kb on - strand, within MPMX20_04254at 4436.526 kb on + strand, within MPMX20_04254at 4436.639 kb on + strand, within MPMX20_04254at 4436.639 kb on + strand, within MPMX20_04254at 4436.656 kb on + strand, within MPMX20_04254at 4436.664 kb on - strand, within MPMX20_04254at 4436.742 kb on + strand, within MPMX20_04254at 4436.748 kb on - strand, within MPMX20_04254at 4436.847 kb on + strand, within MPMX20_04254at 4436.942 kb on - strand, within MPMX20_04254at 4436.944 kb on + strand, within MPMX20_04254at 4437.012 kb on - strand, within MPMX20_04254at 4437.012 kb on - strand, within MPMX20_04254at 4437.028 kb on + strand, within MPMX20_04254at 4437.126 kb on + strandat 4437.134 kb on - strandat 4437.168 kb on + strandat 4437.224 kb on + strandat 4437.226 kb on + strandat 4437.244 kb on - strandat 4437.255 kb on + strandat 4437.255 kb on + strandat 4437.255 kb on + strandat 4437.263 kb on - strandat 4437.287 kb on - strandat 4437.317 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (C)
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4,435,129 + MPMX20_04251 0.90 +2.2
4,435,137 - -0.1
4,435,137 - -3.1
4,435,137 - +0.2
4,435,189 + +1.7
4,435,232 + -0.5
4,435,240 - -1.2
4,435,240 - -0.6
4,435,240 - -2.2
4,435,247 + +2.8
4,435,257 + -0.6
4,435,257 + +0.4
4,435,257 + -1.4
4,435,257 + +0.2
4,435,379 + MPMX20_04252 0.21 -2.1
4,435,462 + MPMX20_04252 0.31 -0.2
4,435,482 - MPMX20_04252 0.33 -0.2
4,435,497 + MPMX20_04252 0.35 -4.3
4,435,505 - MPMX20_04252 0.36 -3.1
4,435,505 - MPMX20_04252 0.36 +1.5
4,435,505 - MPMX20_04252 0.36 -0.3
4,435,505 - MPMX20_04252 0.36 +0.9
4,435,505 - MPMX20_04252 0.36 -1.2
4,435,505 - MPMX20_04252 0.36 -0.8
4,435,505 - MPMX20_04252 0.36 -3.3
4,435,554 + MPMX20_04252 0.42 +1.1
4,435,625 - MPMX20_04252 0.50 -4.2
4,435,627 + MPMX20_04252 0.50 -1.6
4,435,640 - MPMX20_04252 0.52 +3.3
4,435,822 - MPMX20_04252 0.74 -3.2
4,435,844 + MPMX20_04252 0.76 +1.7
4,435,902 + MPMX20_04252 0.83 -0.7
4,435,904 + MPMX20_04252 0.84 +0.9
4,435,907 - MPMX20_04252 0.84 +0.6
4,436,040 + -0.0
4,436,042 + +1.2
4,436,042 + +0.3
4,436,043 - -1.4
4,436,049 - -1.0
4,436,050 - +1.2
4,436,144 + MPMX20_04253 0.37 +0.3
4,436,268 + MPMX20_04253 0.78 -0.9
4,436,347 + -2.2
4,436,352 + +1.2
4,436,428 - MPMX20_04254 0.10 -3.7
4,436,428 - MPMX20_04254 0.10 -0.0
4,436,453 + MPMX20_04254 0.13 +1.6
4,436,462 + MPMX20_04254 0.14 +0.7
4,436,501 - MPMX20_04254 0.19 -1.9
4,436,526 + MPMX20_04254 0.21 +1.4
4,436,639 + MPMX20_04254 0.35 -2.7
4,436,639 + MPMX20_04254 0.35 -2.5
4,436,656 + MPMX20_04254 0.37 -0.9
4,436,664 - MPMX20_04254 0.38 +1.5
4,436,742 + MPMX20_04254 0.47 +1.8
4,436,748 - MPMX20_04254 0.47 -1.5
4,436,847 + MPMX20_04254 0.59 -0.0
4,436,942 - MPMX20_04254 0.70 -0.3
4,436,944 + MPMX20_04254 0.70 -2.5
4,437,012 - MPMX20_04254 0.78 -1.6
4,437,012 - MPMX20_04254 0.78 +1.0
4,437,028 + MPMX20_04254 0.80 -2.1
4,437,126 + -1.7
4,437,134 - -0.5
4,437,168 + -0.6
4,437,224 + +0.4
4,437,226 + +1.6
4,437,244 - -0.5
4,437,255 + -0.6
4,437,255 + +0.1
4,437,255 + +1.2
4,437,263 - +1.6
4,437,287 - +1.5
4,437,317 - +1.3

Or see this region's nucleotide sequence