Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01691

Experiment: Putrescine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01689 and MPMX20_01690 are separated by 172 nucleotidesMPMX20_01690 and MPMX20_01691 are separated by 42 nucleotidesMPMX20_01691 and MPMX20_01692 are separated by 96 nucleotides MPMX20_01689: MPMX20_01689 - NAD(P)H dehydrogenase (quinone), at 1,788,224 to 1,788,820 _01689 MPMX20_01690: MPMX20_01690 - hypothetical protein, at 1,788,993 to 1,789,169 _01690 MPMX20_01691: MPMX20_01691 - hypothetical protein, at 1,789,212 to 1,789,382 _01691 MPMX20_01692: MPMX20_01692 - hypothetical protein, at 1,789,479 to 1,790,423 _01692 Position (kb) 1789 1790Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1788.252 kb on + strandat 1788.262 kb on + strandat 1788.266 kb on - strandat 1788.369 kb on - strand, within MPMX20_01689at 1788.430 kb on + strand, within MPMX20_01689at 1788.438 kb on - strand, within MPMX20_01689at 1788.493 kb on - strand, within MPMX20_01689at 1788.523 kb on - strand, within MPMX20_01689at 1788.555 kb on + strand, within MPMX20_01689at 1788.555 kb on + strand, within MPMX20_01689at 1788.560 kb on + strand, within MPMX20_01689at 1788.568 kb on - strand, within MPMX20_01689at 1788.586 kb on + strand, within MPMX20_01689at 1788.721 kb on + strand, within MPMX20_01689at 1788.721 kb on + strand, within MPMX20_01689at 1788.721 kb on + strand, within MPMX20_01689at 1788.721 kb on + strand, within MPMX20_01689at 1788.721 kb on + strand, within MPMX20_01689at 1788.721 kb on + strand, within MPMX20_01689at 1788.721 kb on + strand, within MPMX20_01689at 1788.729 kb on - strand, within MPMX20_01689at 1788.729 kb on - strand, within MPMX20_01689at 1788.729 kb on - strand, within MPMX20_01689at 1788.729 kb on - strand, within MPMX20_01689at 1788.759 kb on + strand, within MPMX20_01689at 1788.761 kb on - strandat 1788.771 kb on + strandat 1788.771 kb on + strandat 1788.779 kb on - strandat 1788.779 kb on - strandat 1788.779 kb on - strandat 1788.792 kb on + strandat 1788.792 kb on + strandat 1788.838 kb on - strandat 1788.861 kb on - strandat 1789.021 kb on + strand, within MPMX20_01690at 1789.058 kb on + strand, within MPMX20_01690at 1789.066 kb on + strand, within MPMX20_01690at 1789.099 kb on + strand, within MPMX20_01690at 1789.105 kb on - strand, within MPMX20_01690at 1789.107 kb on - strand, within MPMX20_01690at 1789.107 kb on - strand, within MPMX20_01690at 1789.107 kb on - strand, within MPMX20_01690at 1789.119 kb on + strand, within MPMX20_01690at 1789.119 kb on + strand, within MPMX20_01690at 1789.119 kb on + strand, within MPMX20_01690at 1789.127 kb on - strand, within MPMX20_01690at 1789.131 kb on + strand, within MPMX20_01690at 1789.135 kb on - strand, within MPMX20_01690at 1789.141 kb on - strand, within MPMX20_01690at 1789.189 kb on - strandat 1789.190 kb on - strandat 1789.197 kb on + strandat 1789.197 kb on + strandat 1789.197 kb on + strandat 1789.197 kb on + strandat 1789.204 kb on + strandat 1789.204 kb on + strandat 1789.212 kb on - strandat 1789.230 kb on + strand, within MPMX20_01691at 1789.238 kb on - strand, within MPMX20_01691at 1789.285 kb on - strand, within MPMX20_01691at 1789.387 kb on - strandat 1789.438 kb on + strandat 1789.450 kb on + strandat 1789.476 kb on - strandat 1789.573 kb on - strandat 1789.693 kb on + strand, within MPMX20_01692at 1789.709 kb on + strand, within MPMX20_01692at 1789.748 kb on + strand, within MPMX20_01692at 1789.756 kb on - strand, within MPMX20_01692at 1789.781 kb on - strand, within MPMX20_01692at 1789.817 kb on + strand, within MPMX20_01692at 1789.837 kb on - strand, within MPMX20_01692at 1789.846 kb on + strand, within MPMX20_01692at 1789.855 kb on - strand, within MPMX20_01692at 1789.859 kb on - strand, within MPMX20_01692at 1789.909 kb on + strand, within MPMX20_01692at 1789.976 kb on + strand, within MPMX20_01692at 1789.976 kb on + strand, within MPMX20_01692at 1790.026 kb on - strand, within MPMX20_01692at 1790.107 kb on - strand, within MPMX20_01692at 1790.111 kb on + strand, within MPMX20_01692at 1790.190 kb on + strand, within MPMX20_01692at 1790.190 kb on + strand, within MPMX20_01692at 1790.190 kb on + strand, within MPMX20_01692at 1790.190 kb on + strand, within MPMX20_01692at 1790.198 kb on - strand, within MPMX20_01692at 1790.198 kb on - strand, within MPMX20_01692at 1790.198 kb on - strand, within MPMX20_01692at 1790.198 kb on - strand, within MPMX20_01692at 1790.245 kb on - strand, within MPMX20_01692

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (C)
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1,788,252 + -0.4
1,788,262 + -0.6
1,788,266 - +2.4
1,788,369 - MPMX20_01689 0.24 +0.3
1,788,430 + MPMX20_01689 0.35 +1.2
1,788,438 - MPMX20_01689 0.36 -0.3
1,788,493 - MPMX20_01689 0.45 +1.0
1,788,523 - MPMX20_01689 0.50 -3.8
1,788,555 + MPMX20_01689 0.55 -3.2
1,788,555 + MPMX20_01689 0.55 +0.4
1,788,560 + MPMX20_01689 0.56 -0.3
1,788,568 - MPMX20_01689 0.58 -1.4
1,788,586 + MPMX20_01689 0.61 +0.4
1,788,721 + MPMX20_01689 0.83 +0.1
1,788,721 + MPMX20_01689 0.83 +0.3
1,788,721 + MPMX20_01689 0.83 +1.0
1,788,721 + MPMX20_01689 0.83 -3.9
1,788,721 + MPMX20_01689 0.83 +0.6
1,788,721 + MPMX20_01689 0.83 +0.9
1,788,721 + MPMX20_01689 0.83 -0.6
1,788,729 - MPMX20_01689 0.85 -2.4
1,788,729 - MPMX20_01689 0.85 +0.5
1,788,729 - MPMX20_01689 0.85 +1.8
1,788,729 - MPMX20_01689 0.85 +0.3
1,788,759 + MPMX20_01689 0.90 +0.6
1,788,761 - -2.0
1,788,771 + -1.2
1,788,771 + -1.5
1,788,779 - -3.6
1,788,779 - +0.5
1,788,779 - -0.3
1,788,792 + -0.6
1,788,792 + +0.5
1,788,838 - -1.8
1,788,861 - -1.4
1,789,021 + MPMX20_01690 0.16 +1.1
1,789,058 + MPMX20_01690 0.37 +1.1
1,789,066 + MPMX20_01690 0.41 -0.3
1,789,099 + MPMX20_01690 0.60 +1.8
1,789,105 - MPMX20_01690 0.63 -1.5
1,789,107 - MPMX20_01690 0.64 +0.9
1,789,107 - MPMX20_01690 0.64 +0.3
1,789,107 - MPMX20_01690 0.64 -0.4
1,789,119 + MPMX20_01690 0.71 +0.8
1,789,119 + MPMX20_01690 0.71 -1.9
1,789,119 + MPMX20_01690 0.71 +1.0
1,789,127 - MPMX20_01690 0.76 +2.6
1,789,131 + MPMX20_01690 0.78 -0.9
1,789,135 - MPMX20_01690 0.80 +1.4
1,789,141 - MPMX20_01690 0.84 -0.4
1,789,189 - -0.2
1,789,190 - -2.6
1,789,197 + +1.6
1,789,197 + +1.5
1,789,197 + +0.9
1,789,197 + +0.8
1,789,204 + +2.5
1,789,204 + -1.9
1,789,212 - +0.8
1,789,230 + MPMX20_01691 0.11 -2.8
1,789,238 - MPMX20_01691 0.15 -3.4
1,789,285 - MPMX20_01691 0.43 -0.5
1,789,387 - +0.2
1,789,438 + -2.7
1,789,450 + -2.9
1,789,476 - -1.4
1,789,573 - +1.4
1,789,693 + MPMX20_01692 0.23 +1.0
1,789,709 + MPMX20_01692 0.24 -0.4
1,789,748 + MPMX20_01692 0.28 -0.2
1,789,756 - MPMX20_01692 0.29 +2.3
1,789,781 - MPMX20_01692 0.32 +1.3
1,789,817 + MPMX20_01692 0.36 +1.2
1,789,837 - MPMX20_01692 0.38 +0.3
1,789,846 + MPMX20_01692 0.39 -0.6
1,789,855 - MPMX20_01692 0.40 -4.1
1,789,859 - MPMX20_01692 0.40 -0.2
1,789,909 + MPMX20_01692 0.46 -1.5
1,789,976 + MPMX20_01692 0.53 -0.2
1,789,976 + MPMX20_01692 0.53 -1.8
1,790,026 - MPMX20_01692 0.58 +0.4
1,790,107 - MPMX20_01692 0.66 +0.9
1,790,111 + MPMX20_01692 0.67 -1.8
1,790,190 + MPMX20_01692 0.75 -0.9
1,790,190 + MPMX20_01692 0.75 +1.3
1,790,190 + MPMX20_01692 0.75 +0.8
1,790,190 + MPMX20_01692 0.75 -1.8
1,790,198 - MPMX20_01692 0.76 -0.3
1,790,198 - MPMX20_01692 0.76 -3.6
1,790,198 - MPMX20_01692 0.76 -1.9
1,790,198 - MPMX20_01692 0.76 +1.5
1,790,245 - MPMX20_01692 0.81 +0.1

Or see this region's nucleotide sequence