Experiment: Putrescine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01689 and MPMX20_01690 are separated by 172 nucleotides MPMX20_01690 and MPMX20_01691 are separated by 42 nucleotides MPMX20_01691 and MPMX20_01692 are separated by 96 nucleotides
MPMX20_01689: MPMX20_01689 - NAD(P)H dehydrogenase (quinone), at 1,788,224 to 1,788,820
_01689
MPMX20_01690: MPMX20_01690 - hypothetical protein, at 1,788,993 to 1,789,169
_01690
MPMX20_01691: MPMX20_01691 - hypothetical protein, at 1,789,212 to 1,789,382
_01691
MPMX20_01692: MPMX20_01692 - hypothetical protein, at 1,789,479 to 1,790,423
_01692
Position (kb)
1789
1790 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1788.252 kb on + strand at 1788.262 kb on + strand at 1788.266 kb on - strand at 1788.369 kb on - strand, within MPMX20_01689 at 1788.430 kb on + strand, within MPMX20_01689 at 1788.438 kb on - strand, within MPMX20_01689 at 1788.493 kb on - strand, within MPMX20_01689 at 1788.523 kb on - strand, within MPMX20_01689 at 1788.555 kb on + strand, within MPMX20_01689 at 1788.555 kb on + strand, within MPMX20_01689 at 1788.560 kb on + strand, within MPMX20_01689 at 1788.568 kb on - strand, within MPMX20_01689 at 1788.586 kb on + strand, within MPMX20_01689 at 1788.721 kb on + strand, within MPMX20_01689 at 1788.721 kb on + strand, within MPMX20_01689 at 1788.721 kb on + strand, within MPMX20_01689 at 1788.721 kb on + strand, within MPMX20_01689 at 1788.721 kb on + strand, within MPMX20_01689 at 1788.721 kb on + strand, within MPMX20_01689 at 1788.721 kb on + strand, within MPMX20_01689 at 1788.729 kb on - strand, within MPMX20_01689 at 1788.729 kb on - strand, within MPMX20_01689 at 1788.729 kb on - strand, within MPMX20_01689 at 1788.729 kb on - strand, within MPMX20_01689 at 1788.759 kb on + strand, within MPMX20_01689 at 1788.761 kb on - strand at 1788.771 kb on + strand at 1788.771 kb on + strand at 1788.779 kb on - strand at 1788.779 kb on - strand at 1788.779 kb on - strand at 1788.792 kb on + strand at 1788.792 kb on + strand at 1788.838 kb on - strand at 1788.861 kb on - strand at 1789.021 kb on + strand, within MPMX20_01690 at 1789.058 kb on + strand, within MPMX20_01690 at 1789.066 kb on + strand, within MPMX20_01690 at 1789.099 kb on + strand, within MPMX20_01690 at 1789.105 kb on - strand, within MPMX20_01690 at 1789.107 kb on - strand, within MPMX20_01690 at 1789.107 kb on - strand, within MPMX20_01690 at 1789.107 kb on - strand, within MPMX20_01690 at 1789.119 kb on + strand, within MPMX20_01690 at 1789.119 kb on + strand, within MPMX20_01690 at 1789.119 kb on + strand, within MPMX20_01690 at 1789.127 kb on - strand, within MPMX20_01690 at 1789.131 kb on + strand, within MPMX20_01690 at 1789.135 kb on - strand, within MPMX20_01690 at 1789.141 kb on - strand, within MPMX20_01690 at 1789.189 kb on - strand at 1789.190 kb on - strand at 1789.197 kb on + strand at 1789.197 kb on + strand at 1789.197 kb on + strand at 1789.197 kb on + strand at 1789.204 kb on + strand at 1789.204 kb on + strand at 1789.212 kb on - strand at 1789.230 kb on + strand, within MPMX20_01691 at 1789.238 kb on - strand, within MPMX20_01691 at 1789.285 kb on - strand, within MPMX20_01691 at 1789.387 kb on - strand at 1789.438 kb on + strand at 1789.450 kb on + strand at 1789.476 kb on - strand at 1789.573 kb on - strand at 1789.693 kb on + strand, within MPMX20_01692 at 1789.709 kb on + strand, within MPMX20_01692 at 1789.748 kb on + strand, within MPMX20_01692 at 1789.756 kb on - strand, within MPMX20_01692 at 1789.781 kb on - strand, within MPMX20_01692 at 1789.817 kb on + strand, within MPMX20_01692 at 1789.837 kb on - strand, within MPMX20_01692 at 1789.846 kb on + strand, within MPMX20_01692 at 1789.855 kb on - strand, within MPMX20_01692 at 1789.859 kb on - strand, within MPMX20_01692 at 1789.909 kb on + strand, within MPMX20_01692 at 1789.976 kb on + strand, within MPMX20_01692 at 1789.976 kb on + strand, within MPMX20_01692 at 1790.026 kb on - strand, within MPMX20_01692 at 1790.107 kb on - strand, within MPMX20_01692 at 1790.111 kb on + strand, within MPMX20_01692 at 1790.190 kb on + strand, within MPMX20_01692 at 1790.190 kb on + strand, within MPMX20_01692 at 1790.190 kb on + strand, within MPMX20_01692 at 1790.190 kb on + strand, within MPMX20_01692 at 1790.198 kb on - strand, within MPMX20_01692 at 1790.198 kb on - strand, within MPMX20_01692 at 1790.198 kb on - strand, within MPMX20_01692 at 1790.198 kb on - strand, within MPMX20_01692 at 1790.245 kb on - strand, within MPMX20_01692
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (C) remove 1,788,252 + -0.4 1,788,262 + -0.6 1,788,266 - +2.4 1,788,369 - MPMX20_01689 0.24 +0.3 1,788,430 + MPMX20_01689 0.35 +1.2 1,788,438 - MPMX20_01689 0.36 -0.3 1,788,493 - MPMX20_01689 0.45 +1.0 1,788,523 - MPMX20_01689 0.50 -3.8 1,788,555 + MPMX20_01689 0.55 -3.2 1,788,555 + MPMX20_01689 0.55 +0.4 1,788,560 + MPMX20_01689 0.56 -0.3 1,788,568 - MPMX20_01689 0.58 -1.4 1,788,586 + MPMX20_01689 0.61 +0.4 1,788,721 + MPMX20_01689 0.83 +0.1 1,788,721 + MPMX20_01689 0.83 +0.3 1,788,721 + MPMX20_01689 0.83 +1.0 1,788,721 + MPMX20_01689 0.83 -3.9 1,788,721 + MPMX20_01689 0.83 +0.6 1,788,721 + MPMX20_01689 0.83 +0.9 1,788,721 + MPMX20_01689 0.83 -0.6 1,788,729 - MPMX20_01689 0.85 -2.4 1,788,729 - MPMX20_01689 0.85 +0.5 1,788,729 - MPMX20_01689 0.85 +1.8 1,788,729 - MPMX20_01689 0.85 +0.3 1,788,759 + MPMX20_01689 0.90 +0.6 1,788,761 - -2.0 1,788,771 + -1.2 1,788,771 + -1.5 1,788,779 - -3.6 1,788,779 - +0.5 1,788,779 - -0.3 1,788,792 + -0.6 1,788,792 + +0.5 1,788,838 - -1.8 1,788,861 - -1.4 1,789,021 + MPMX20_01690 0.16 +1.1 1,789,058 + MPMX20_01690 0.37 +1.1 1,789,066 + MPMX20_01690 0.41 -0.3 1,789,099 + MPMX20_01690 0.60 +1.8 1,789,105 - MPMX20_01690 0.63 -1.5 1,789,107 - MPMX20_01690 0.64 +0.9 1,789,107 - MPMX20_01690 0.64 +0.3 1,789,107 - MPMX20_01690 0.64 -0.4 1,789,119 + MPMX20_01690 0.71 +0.8 1,789,119 + MPMX20_01690 0.71 -1.9 1,789,119 + MPMX20_01690 0.71 +1.0 1,789,127 - MPMX20_01690 0.76 +2.6 1,789,131 + MPMX20_01690 0.78 -0.9 1,789,135 - MPMX20_01690 0.80 +1.4 1,789,141 - MPMX20_01690 0.84 -0.4 1,789,189 - -0.2 1,789,190 - -2.6 1,789,197 + +1.6 1,789,197 + +1.5 1,789,197 + +0.9 1,789,197 + +0.8 1,789,204 + +2.5 1,789,204 + -1.9 1,789,212 - +0.8 1,789,230 + MPMX20_01691 0.11 -2.8 1,789,238 - MPMX20_01691 0.15 -3.4 1,789,285 - MPMX20_01691 0.43 -0.5 1,789,387 - +0.2 1,789,438 + -2.7 1,789,450 + -2.9 1,789,476 - -1.4 1,789,573 - +1.4 1,789,693 + MPMX20_01692 0.23 +1.0 1,789,709 + MPMX20_01692 0.24 -0.4 1,789,748 + MPMX20_01692 0.28 -0.2 1,789,756 - MPMX20_01692 0.29 +2.3 1,789,781 - MPMX20_01692 0.32 +1.3 1,789,817 + MPMX20_01692 0.36 +1.2 1,789,837 - MPMX20_01692 0.38 +0.3 1,789,846 + MPMX20_01692 0.39 -0.6 1,789,855 - MPMX20_01692 0.40 -4.1 1,789,859 - MPMX20_01692 0.40 -0.2 1,789,909 + MPMX20_01692 0.46 -1.5 1,789,976 + MPMX20_01692 0.53 -0.2 1,789,976 + MPMX20_01692 0.53 -1.8 1,790,026 - MPMX20_01692 0.58 +0.4 1,790,107 - MPMX20_01692 0.66 +0.9 1,790,111 + MPMX20_01692 0.67 -1.8 1,790,190 + MPMX20_01692 0.75 -0.9 1,790,190 + MPMX20_01692 0.75 +1.3 1,790,190 + MPMX20_01692 0.75 +0.8 1,790,190 + MPMX20_01692 0.75 -1.8 1,790,198 - MPMX20_01692 0.76 -0.3 1,790,198 - MPMX20_01692 0.76 -3.6 1,790,198 - MPMX20_01692 0.76 -1.9 1,790,198 - MPMX20_01692 0.76 +1.5 1,790,245 - MPMX20_01692 0.81 +0.1
Or see this region's nucleotide sequence