Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00056

Experiment: Putrescine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00054 and MPMX20_00055 are separated by 27 nucleotidesMPMX20_00055 and MPMX20_00056 are separated by 131 nucleotidesMPMX20_00056 and MPMX20_00057 overlap by 1 nucleotides MPMX20_00054: MPMX20_00054 - Catabolite control protein A, at 53,510 to 54,460 _00054 MPMX20_00055: MPMX20_00055 - hypothetical protein, at 54,488 to 54,784 _00055 MPMX20_00056: MPMX20_00056 - Outer membrane protein OprM, at 54,916 to 56,280 _00056 MPMX20_00057: MPMX20_00057 - Multidrug resistance protein MexB, at 56,280 to 59,390 _00057 Position (kb) 54 55 56 57Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 53.930 kb on - strand, within MPMX20_00054at 53.930 kb on - strand, within MPMX20_00054at 53.933 kb on - strand, within MPMX20_00054at 54.002 kb on + strand, within MPMX20_00054at 54.023 kb on + strand, within MPMX20_00054at 54.023 kb on + strand, within MPMX20_00054at 54.023 kb on + strand, within MPMX20_00054at 54.023 kb on + strand, within MPMX20_00054at 54.023 kb on + strand, within MPMX20_00054at 54.023 kb on + strand, within MPMX20_00054at 54.026 kb on - strand, within MPMX20_00054at 54.031 kb on - strand, within MPMX20_00054at 54.073 kb on - strand, within MPMX20_00054at 54.139 kb on + strand, within MPMX20_00054at 54.155 kb on + strand, within MPMX20_00054at 54.174 kb on - strand, within MPMX20_00054at 54.233 kb on + strand, within MPMX20_00054at 54.276 kb on + strand, within MPMX20_00054at 54.284 kb on - strand, within MPMX20_00054at 54.285 kb on - strand, within MPMX20_00054at 54.292 kb on - strand, within MPMX20_00054at 54.403 kb on + strandat 54.409 kb on + strandat 54.411 kb on + strandat 54.411 kb on + strandat 54.419 kb on - strandat 54.419 kb on - strandat 54.419 kb on - strandat 54.428 kb on + strandat 54.479 kb on + strandat 54.551 kb on + strand, within MPMX20_00055at 54.559 kb on - strand, within MPMX20_00055at 54.656 kb on - strand, within MPMX20_00055at 54.656 kb on - strand, within MPMX20_00055at 54.656 kb on - strand, within MPMX20_00055at 54.656 kb on - strand, within MPMX20_00055at 54.659 kb on + strand, within MPMX20_00055at 54.727 kb on + strand, within MPMX20_00055at 54.755 kb on - strandat 54.760 kb on + strandat 54.768 kb on - strandat 54.769 kb on + strandat 54.772 kb on - strandat 54.801 kb on + strandat 54.801 kb on + strandat 54.801 kb on + strandat 54.846 kb on - strandat 54.925 kb on - strandat 54.926 kb on + strandat 54.937 kb on - strandat 54.948 kb on + strandat 54.983 kb on - strandat 54.983 kb on - strandat 55.001 kb on + strandat 55.002 kb on - strandat 55.006 kb on + strandat 55.056 kb on + strand, within MPMX20_00056at 55.056 kb on + strand, within MPMX20_00056at 55.064 kb on - strand, within MPMX20_00056at 55.064 kb on - strand, within MPMX20_00056at 55.064 kb on - strand, within MPMX20_00056at 55.227 kb on + strand, within MPMX20_00056at 55.270 kb on - strand, within MPMX20_00056at 55.270 kb on - strand, within MPMX20_00056at 55.272 kb on + strand, within MPMX20_00056at 55.279 kb on + strand, within MPMX20_00056at 55.288 kb on - strand, within MPMX20_00056at 55.290 kb on - strand, within MPMX20_00056at 55.323 kb on + strand, within MPMX20_00056at 55.400 kb on + strand, within MPMX20_00056at 55.467 kb on + strand, within MPMX20_00056at 55.530 kb on - strand, within MPMX20_00056at 55.630 kb on + strand, within MPMX20_00056at 55.701 kb on + strand, within MPMX20_00056at 55.729 kb on + strand, within MPMX20_00056at 55.739 kb on + strand, within MPMX20_00056at 55.875 kb on + strand, within MPMX20_00056at 55.886 kb on + strand, within MPMX20_00056at 55.909 kb on + strand, within MPMX20_00056at 55.909 kb on + strand, within MPMX20_00056at 55.922 kb on + strand, within MPMX20_00056at 55.967 kb on - strand, within MPMX20_00056at 55.977 kb on + strand, within MPMX20_00056at 55.978 kb on + strand, within MPMX20_00056at 56.010 kb on - strand, within MPMX20_00056at 56.029 kb on - strand, within MPMX20_00056at 56.209 kb on + strandat 56.229 kb on + strandat 56.230 kb on + strandat 56.234 kb on + strandat 56.253 kb on - strandat 56.257 kb on + strandat 56.257 kb on + strandat 56.257 kb on + strandat 56.265 kb on - strandat 56.342 kb on - strandat 56.423 kb on - strandat 56.423 kb on - strandat 56.423 kb on - strandat 56.447 kb on + strandat 56.447 kb on + strandat 56.455 kb on - strandat 56.493 kb on - strandat 56.507 kb on - strandat 56.507 kb on - strandat 56.514 kb on - strandat 56.605 kb on + strand, within MPMX20_00057at 56.671 kb on + strand, within MPMX20_00057at 56.681 kb on + strand, within MPMX20_00057at 56.714 kb on + strand, within MPMX20_00057at 56.733 kb on - strand, within MPMX20_00057at 56.761 kb on + strand, within MPMX20_00057at 56.840 kb on - strand, within MPMX20_00057at 56.882 kb on - strand, within MPMX20_00057at 56.905 kb on + strand, within MPMX20_00057at 56.970 kb on - strand, within MPMX20_00057at 57.008 kb on + strand, within MPMX20_00057at 57.016 kb on - strand, within MPMX20_00057at 57.040 kb on + strand, within MPMX20_00057at 57.150 kb on - strand, within MPMX20_00057at 57.158 kb on + strand, within MPMX20_00057at 57.179 kb on + strand, within MPMX20_00057at 57.192 kb on - strand, within MPMX20_00057at 57.207 kb on - strand, within MPMX20_00057at 57.207 kb on - strand, within MPMX20_00057at 57.266 kb on + strand, within MPMX20_00057at 57.274 kb on - strand, within MPMX20_00057at 57.276 kb on + strand, within MPMX20_00057

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (C)
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53,930 - MPMX20_00054 0.44 -1.7
53,930 - MPMX20_00054 0.44 -3.6
53,933 - MPMX20_00054 0.44 +1.4
54,002 + MPMX20_00054 0.52 +0.8
54,023 + MPMX20_00054 0.54 -3.0
54,023 + MPMX20_00054 0.54 -2.7
54,023 + MPMX20_00054 0.54 -0.0
54,023 + MPMX20_00054 0.54 +0.7
54,023 + MPMX20_00054 0.54 +2.1
54,023 + MPMX20_00054 0.54 -1.0
54,026 - MPMX20_00054 0.54 -1.0
54,031 - MPMX20_00054 0.55 +0.6
54,073 - MPMX20_00054 0.59 -0.4
54,139 + MPMX20_00054 0.66 -2.1
54,155 + MPMX20_00054 0.68 +1.8
54,174 - MPMX20_00054 0.70 +2.3
54,233 + MPMX20_00054 0.76 +2.0
54,276 + MPMX20_00054 0.81 -3.1
54,284 - MPMX20_00054 0.81 +0.4
54,285 - MPMX20_00054 0.81 -1.4
54,292 - MPMX20_00054 0.82 +1.1
54,403 + +1.1
54,409 + -1.3
54,411 + +2.2
54,411 + -0.1
54,419 - +1.3
54,419 - -2.1
54,419 - +0.4
54,428 + +0.9
54,479 + +0.6
54,551 + MPMX20_00055 0.21 -2.1
54,559 - MPMX20_00055 0.24 -1.6
54,656 - MPMX20_00055 0.57 -0.3
54,656 - MPMX20_00055 0.57 -3.3
54,656 - MPMX20_00055 0.57 -0.8
54,656 - MPMX20_00055 0.57 -3.5
54,659 + MPMX20_00055 0.58 -0.1
54,727 + MPMX20_00055 0.80 +0.5
54,755 - +0.4
54,760 + -0.8
54,768 - -0.1
54,769 + +3.0
54,772 - -1.2
54,801 + +0.4
54,801 + +0.9
54,801 + +0.1
54,846 - -0.4
54,925 - +1.4
54,926 + +1.1
54,937 - +0.0
54,948 + +2.5
54,983 - -0.0
54,983 - -0.3
55,001 + -1.7
55,002 - -1.9
55,006 + +0.6
55,056 + MPMX20_00056 0.10 -0.5
55,056 + MPMX20_00056 0.10 -0.1
55,064 - MPMX20_00056 0.11 +1.4
55,064 - MPMX20_00056 0.11 +0.2
55,064 - MPMX20_00056 0.11 -1.2
55,227 + MPMX20_00056 0.23 -0.7
55,270 - MPMX20_00056 0.26 +0.7
55,270 - MPMX20_00056 0.26 +1.2
55,272 + MPMX20_00056 0.26 +0.2
55,279 + MPMX20_00056 0.27 +0.6
55,288 - MPMX20_00056 0.27 +0.6
55,290 - MPMX20_00056 0.27 -4.3
55,323 + MPMX20_00056 0.30 -1.9
55,400 + MPMX20_00056 0.35 -0.1
55,467 + MPMX20_00056 0.40 +3.5
55,530 - MPMX20_00056 0.45 +1.4
55,630 + MPMX20_00056 0.52 +2.2
55,701 + MPMX20_00056 0.58 +0.9
55,729 + MPMX20_00056 0.60 +1.8
55,739 + MPMX20_00056 0.60 -0.5
55,875 + MPMX20_00056 0.70 -1.2
55,886 + MPMX20_00056 0.71 +0.2
55,909 + MPMX20_00056 0.73 +1.4
55,909 + MPMX20_00056 0.73 +3.1
55,922 + MPMX20_00056 0.74 +2.8
55,967 - MPMX20_00056 0.77 +0.5
55,977 + MPMX20_00056 0.78 -3.2
55,978 + MPMX20_00056 0.78 +1.8
56,010 - MPMX20_00056 0.80 -0.8
56,029 - MPMX20_00056 0.82 +0.4
56,209 + -0.2
56,229 + -2.5
56,230 + +1.1
56,234 + -1.1
56,253 - -0.5
56,257 + -0.5
56,257 + -0.3
56,257 + -4.1
56,265 - +0.0
56,342 - +0.2
56,423 - +0.6
56,423 - +0.9
56,423 - -2.3
56,447 + -1.7
56,447 + -3.3
56,455 - -0.3
56,493 - +1.4
56,507 - -0.7
56,507 - -0.8
56,514 - -2.2
56,605 + MPMX20_00057 0.10 +2.0
56,671 + MPMX20_00057 0.13 -0.8
56,681 + MPMX20_00057 0.13 -1.4
56,714 + MPMX20_00057 0.14 -2.3
56,733 - MPMX20_00057 0.15 -2.7
56,761 + MPMX20_00057 0.15 +0.6
56,840 - MPMX20_00057 0.18 +0.9
56,882 - MPMX20_00057 0.19 -1.9
56,905 + MPMX20_00057 0.20 -0.5
56,970 - MPMX20_00057 0.22 +0.5
57,008 + MPMX20_00057 0.23 +2.5
57,016 - MPMX20_00057 0.24 -1.0
57,040 + MPMX20_00057 0.24 +1.5
57,150 - MPMX20_00057 0.28 +0.7
57,158 + MPMX20_00057 0.28 -1.5
57,179 + MPMX20_00057 0.29 +1.2
57,192 - MPMX20_00057 0.29 -0.2
57,207 - MPMX20_00057 0.30 +0.5
57,207 - MPMX20_00057 0.30 -1.9
57,266 + MPMX20_00057 0.32 -0.4
57,274 - MPMX20_00057 0.32 +2.7
57,276 + MPMX20_00057 0.32 +1.6

Or see this region's nucleotide sequence