Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00255

Experiment: casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00254 and MPMX20_00255 are separated by 180 nucleotidesMPMX20_00255 and MPMX20_00256 are separated by 12 nucleotidesMPMX20_00256 and MPMX20_00257 are separated by 64 nucleotides MPMX20_00254: MPMX20_00254 - hypothetical protein, at 272,010 to 272,963 _00254 MPMX20_00255: MPMX20_00255 - Chorismate pyruvate-lyase, at 273,144 to 273,641 _00255 MPMX20_00256: MPMX20_00256 - 4-hydroxybenzoate octaprenyltransferase, at 273,654 to 274,523 _00256 MPMX20_00257: MPMX20_00257 - Glycerol-3-phosphate acyltransferase, at 274,588 to 277,008 _00257 Position (kb) 273 274Strain fitness (log2 ratio) -3 -2 -1 0 1at 272.156 kb on + strand, within MPMX20_00254at 272.159 kb on - strand, within MPMX20_00254at 272.186 kb on - strand, within MPMX20_00254at 272.226 kb on - strand, within MPMX20_00254at 272.226 kb on - strand, within MPMX20_00254at 272.275 kb on - strand, within MPMX20_00254at 272.285 kb on + strand, within MPMX20_00254at 272.287 kb on + strand, within MPMX20_00254at 272.287 kb on + strand, within MPMX20_00254at 272.295 kb on - strand, within MPMX20_00254at 272.313 kb on + strand, within MPMX20_00254at 272.321 kb on - strand, within MPMX20_00254at 272.345 kb on + strand, within MPMX20_00254at 272.378 kb on + strand, within MPMX20_00254at 272.402 kb on + strand, within MPMX20_00254at 272.430 kb on - strand, within MPMX20_00254at 272.447 kb on - strand, within MPMX20_00254at 272.461 kb on + strand, within MPMX20_00254at 272.461 kb on + strand, within MPMX20_00254at 272.471 kb on + strand, within MPMX20_00254at 272.521 kb on + strand, within MPMX20_00254at 272.529 kb on - strand, within MPMX20_00254at 272.529 kb on - strand, within MPMX20_00254at 272.531 kb on + strand, within MPMX20_00254at 272.574 kb on + strand, within MPMX20_00254at 272.574 kb on + strand, within MPMX20_00254at 272.615 kb on - strand, within MPMX20_00254at 272.706 kb on + strand, within MPMX20_00254at 272.714 kb on - strand, within MPMX20_00254at 272.716 kb on + strand, within MPMX20_00254at 272.724 kb on - strand, within MPMX20_00254at 272.727 kb on + strand, within MPMX20_00254at 272.813 kb on - strand, within MPMX20_00254at 272.826 kb on - strand, within MPMX20_00254at 272.904 kb on + strandat 272.904 kb on + strandat 272.942 kb on - strandat 272.952 kb on + strandat 272.958 kb on + strandat 272.958 kb on + strandat 272.966 kb on - strandat 272.993 kb on + strandat 272.993 kb on + strandat 273.154 kb on - strandat 273.154 kb on - strandat 273.187 kb on - strandat 273.297 kb on - strand, within MPMX20_00255at 273.304 kb on + strand, within MPMX20_00255at 273.312 kb on - strand, within MPMX20_00255at 273.313 kb on - strand, within MPMX20_00255at 273.328 kb on + strand, within MPMX20_00255at 273.328 kb on + strand, within MPMX20_00255at 273.328 kb on + strand, within MPMX20_00255at 273.336 kb on - strand, within MPMX20_00255at 273.336 kb on - strand, within MPMX20_00255at 273.336 kb on - strand, within MPMX20_00255at 273.336 kb on - strand, within MPMX20_00255at 273.433 kb on + strand, within MPMX20_00255at 273.448 kb on + strand, within MPMX20_00255at 273.485 kb on + strand, within MPMX20_00255at 273.508 kb on + strand, within MPMX20_00255at 273.508 kb on + strand, within MPMX20_00255at 273.516 kb on - strand, within MPMX20_00255at 273.555 kb on + strand, within MPMX20_00255at 273.557 kb on + strand, within MPMX20_00255at 273.630 kb on + strandat 273.630 kb on + strandat 274.502 kb on + strandat 274.516 kb on - strandat 274.577 kb on - strandat 274.626 kb on + strandat 274.626 kb on + strandat 274.626 kb on + strandat 274.634 kb on - strandat 274.634 kb on - strandat 274.639 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
remove
272,156 + MPMX20_00254 0.15 -1.7
272,159 - MPMX20_00254 0.16 -0.0
272,186 - MPMX20_00254 0.18 +0.3
272,226 - MPMX20_00254 0.23 -1.0
272,226 - MPMX20_00254 0.23 +1.1
272,275 - MPMX20_00254 0.28 +1.0
272,285 + MPMX20_00254 0.29 +1.0
272,287 + MPMX20_00254 0.29 -0.4
272,287 + MPMX20_00254 0.29 -0.8
272,295 - MPMX20_00254 0.30 -1.1
272,313 + MPMX20_00254 0.32 +0.5
272,321 - MPMX20_00254 0.33 +0.9
272,345 + MPMX20_00254 0.35 +1.0
272,378 + MPMX20_00254 0.39 +0.4
272,402 + MPMX20_00254 0.41 -0.3
272,430 - MPMX20_00254 0.44 +0.4
272,447 - MPMX20_00254 0.46 -0.2
272,461 + MPMX20_00254 0.47 +0.2
272,461 + MPMX20_00254 0.47 +0.7
272,471 + MPMX20_00254 0.48 +0.6
272,521 + MPMX20_00254 0.54 +0.3
272,529 - MPMX20_00254 0.54 +0.5
272,529 - MPMX20_00254 0.54 +0.9
272,531 + MPMX20_00254 0.55 +0.1
272,574 + MPMX20_00254 0.59 +0.9
272,574 + MPMX20_00254 0.59 -1.1
272,615 - MPMX20_00254 0.63 +1.0
272,706 + MPMX20_00254 0.73 -0.9
272,714 - MPMX20_00254 0.74 +0.6
272,716 + MPMX20_00254 0.74 -1.9
272,724 - MPMX20_00254 0.75 +0.5
272,727 + MPMX20_00254 0.75 +1.0
272,813 - MPMX20_00254 0.84 -0.3
272,826 - MPMX20_00254 0.86 +1.3
272,904 + -0.7
272,904 + -0.3
272,942 - -0.7
272,952 + -0.5
272,958 + -0.4
272,958 + -0.1
272,966 - +0.8
272,993 + -1.0
272,993 + -0.8
273,154 - -1.3
273,154 - -0.9
273,187 - -0.8
273,297 - MPMX20_00255 0.31 -0.5
273,304 + MPMX20_00255 0.32 -1.2
273,312 - MPMX20_00255 0.34 -0.7
273,313 - MPMX20_00255 0.34 -0.2
273,328 + MPMX20_00255 0.37 +0.5
273,328 + MPMX20_00255 0.37 -0.9
273,328 + MPMX20_00255 0.37 +0.4
273,336 - MPMX20_00255 0.39 -1.8
273,336 - MPMX20_00255 0.39 -2.0
273,336 - MPMX20_00255 0.39 -3.2
273,336 - MPMX20_00255 0.39 -1.1
273,433 + MPMX20_00255 0.58 -0.9
273,448 + MPMX20_00255 0.61 -2.3
273,485 + MPMX20_00255 0.68 -0.5
273,508 + MPMX20_00255 0.73 -2.0
273,508 + MPMX20_00255 0.73 -0.6
273,516 - MPMX20_00255 0.75 -1.8
273,555 + MPMX20_00255 0.83 -0.8
273,557 + MPMX20_00255 0.83 -0.2
273,630 + -1.7
273,630 + +1.6
274,502 + +1.1
274,516 - -1.8
274,577 - -1.2
274,626 + +1.6
274,626 + +0.5
274,626 + +1.1
274,634 - -1.7
274,634 - -0.5
274,639 - -0.3

Or see this region's nucleotide sequence