Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01189

Experiment: Gelatin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01187 and MPMX20_01188 are separated by 76 nucleotidesMPMX20_01188 and MPMX20_01189 are separated by 152 nucleotidesMPMX20_01189 and MPMX20_01190 are separated by 205 nucleotidesMPMX20_01190 and MPMX20_01191 overlap by 1 nucleotides MPMX20_01187: MPMX20_01187 - Sensor histidine kinase RcsC, at 1,248,639 to 1,250,426 _01187 MPMX20_01188: MPMX20_01188 - hypothetical protein, at 1,250,503 to 1,250,820 _01188 MPMX20_01189: MPMX20_01189 - hypothetical protein, at 1,250,973 to 1,251,809 _01189 MPMX20_01190: MPMX20_01190 - Swarming motility regulation protein RssB, at 1,252,015 to 1,252,692 _01190 MPMX20_01191: MPMX20_01191 - Adaptive-response sensory-kinase SasA, at 1,252,692 to 1,254,086 _01191 Position (kb) 1250 1251 1252Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1249.977 kb on - strand, within MPMX20_01187at 1249.977 kb on - strand, within MPMX20_01187at 1249.987 kb on - strand, within MPMX20_01187at 1250.019 kb on + strand, within MPMX20_01187at 1250.037 kb on + strand, within MPMX20_01187at 1250.037 kb on - strand, within MPMX20_01187at 1250.062 kb on + strand, within MPMX20_01187at 1250.062 kb on + strand, within MPMX20_01187at 1250.062 kb on + strand, within MPMX20_01187at 1250.115 kb on - strand, within MPMX20_01187at 1250.130 kb on - strand, within MPMX20_01187at 1250.131 kb on + strand, within MPMX20_01187at 1250.203 kb on - strand, within MPMX20_01187at 1250.250 kb on - strandat 1250.327 kb on + strandat 1250.335 kb on - strandat 1250.350 kb on + strandat 1250.363 kb on - strandat 1250.367 kb on + strandat 1250.385 kb on + strandat 1250.405 kb on + strandat 1250.415 kb on - strandat 1250.603 kb on - strand, within MPMX20_01188at 1250.679 kb on + strand, within MPMX20_01188at 1250.687 kb on - strand, within MPMX20_01188at 1250.687 kb on - strand, within MPMX20_01188at 1250.687 kb on - strand, within MPMX20_01188at 1250.712 kb on - strand, within MPMX20_01188at 1250.760 kb on + strand, within MPMX20_01188at 1250.768 kb on - strand, within MPMX20_01188at 1250.805 kb on + strandat 1250.805 kb on + strandat 1250.805 kb on + strandat 1250.805 kb on + strandat 1250.829 kb on + strandat 1250.848 kb on - strandat 1250.876 kb on + strandat 1250.876 kb on + strandat 1250.876 kb on + strandat 1250.889 kb on + strandat 1250.955 kb on + strandat 1250.963 kb on - strandat 1250.963 kb on - strandat 1250.963 kb on - strandat 1250.990 kb on + strandat 1251.049 kb on + strandat 1251.049 kb on + strandat 1251.059 kb on + strand, within MPMX20_01189at 1251.067 kb on - strand, within MPMX20_01189at 1251.095 kb on + strand, within MPMX20_01189at 1251.101 kb on + strand, within MPMX20_01189at 1251.104 kb on + strand, within MPMX20_01189at 1251.117 kb on - strand, within MPMX20_01189at 1251.133 kb on + strand, within MPMX20_01189at 1251.210 kb on - strand, within MPMX20_01189at 1251.227 kb on + strand, within MPMX20_01189at 1251.235 kb on - strand, within MPMX20_01189at 1251.253 kb on - strand, within MPMX20_01189at 1251.382 kb on - strand, within MPMX20_01189at 1251.382 kb on - strand, within MPMX20_01189at 1251.382 kb on - strand, within MPMX20_01189at 1251.417 kb on - strand, within MPMX20_01189at 1251.427 kb on - strand, within MPMX20_01189at 1251.471 kb on - strand, within MPMX20_01189at 1251.480 kb on + strand, within MPMX20_01189at 1251.498 kb on - strand, within MPMX20_01189at 1251.506 kb on - strand, within MPMX20_01189at 1251.506 kb on - strand, within MPMX20_01189at 1251.508 kb on + strand, within MPMX20_01189at 1251.516 kb on - strand, within MPMX20_01189at 1251.540 kb on + strand, within MPMX20_01189at 1251.540 kb on - strand, within MPMX20_01189at 1251.540 kb on - strand, within MPMX20_01189at 1251.540 kb on - strand, within MPMX20_01189at 1251.613 kb on - strand, within MPMX20_01189at 1251.618 kb on + strand, within MPMX20_01189at 1251.626 kb on - strand, within MPMX20_01189at 1251.629 kb on + strand, within MPMX20_01189at 1251.642 kb on - strand, within MPMX20_01189at 1251.652 kb on - strand, within MPMX20_01189at 1251.658 kb on + strand, within MPMX20_01189at 1251.659 kb on - strand, within MPMX20_01189at 1251.666 kb on - strand, within MPMX20_01189at 1251.668 kb on + strand, within MPMX20_01189at 1251.669 kb on - strand, within MPMX20_01189at 1251.676 kb on + strand, within MPMX20_01189at 1251.677 kb on - strand, within MPMX20_01189at 1251.684 kb on - strand, within MPMX20_01189at 1251.687 kb on + strand, within MPMX20_01189at 1251.690 kb on - strand, within MPMX20_01189at 1251.700 kb on - strand, within MPMX20_01189at 1251.704 kb on + strand, within MPMX20_01189at 1251.723 kb on + strand, within MPMX20_01189at 1251.733 kb on + strandat 1251.768 kb on + strandat 1251.776 kb on - strandat 1251.783 kb on - strandat 1251.802 kb on - strandat 1251.845 kb on - strandat 1251.873 kb on + strandat 1251.886 kb on + strandat 1251.893 kb on - strandat 1251.925 kb on + strandat 1251.933 kb on - strandat 1251.938 kb on + strandat 1252.040 kb on + strandat 1252.040 kb on + strandat 1252.048 kb on - strandat 1252.048 kb on - strandat 1252.048 kb on - strandat 1252.138 kb on - strand, within MPMX20_01190at 1252.151 kb on + strand, within MPMX20_01190at 1252.166 kb on + strand, within MPMX20_01190at 1252.166 kb on + strand, within MPMX20_01190at 1252.166 kb on + strand, within MPMX20_01190at 1252.166 kb on + strand, within MPMX20_01190at 1252.166 kb on + strand, within MPMX20_01190at 1252.166 kb on + strand, within MPMX20_01190at 1252.166 kb on + strand, within MPMX20_01190at 1252.166 kb on + strand, within MPMX20_01190at 1252.166 kb on + strand, within MPMX20_01190at 1252.166 kb on + strand, within MPMX20_01190at 1252.166 kb on + strand, within MPMX20_01190at 1252.174 kb on - strand, within MPMX20_01190at 1252.174 kb on - strand, within MPMX20_01190at 1252.174 kb on - strand, within MPMX20_01190at 1252.174 kb on - strand, within MPMX20_01190at 1252.174 kb on - strand, within MPMX20_01190at 1252.174 kb on - strand, within MPMX20_01190at 1252.176 kb on + strand, within MPMX20_01190at 1252.184 kb on - strand, within MPMX20_01190at 1252.189 kb on + strand, within MPMX20_01190at 1252.198 kb on - strand, within MPMX20_01190at 1252.221 kb on + strand, within MPMX20_01190at 1252.221 kb on + strand, within MPMX20_01190at 1252.221 kb on + strand, within MPMX20_01190at 1252.221 kb on + strand, within MPMX20_01190at 1252.221 kb on + strand, within MPMX20_01190at 1252.229 kb on - strand, within MPMX20_01190at 1252.229 kb on - strand, within MPMX20_01190at 1252.229 kb on - strand, within MPMX20_01190at 1252.229 kb on - strand, within MPMX20_01190at 1252.229 kb on - strand, within MPMX20_01190at 1252.229 kb on - strand, within MPMX20_01190at 1252.262 kb on + strand, within MPMX20_01190at 1252.264 kb on + strand, within MPMX20_01190at 1252.278 kb on + strand, within MPMX20_01190at 1252.302 kb on + strand, within MPMX20_01190at 1252.346 kb on + strand, within MPMX20_01190at 1252.346 kb on + strand, within MPMX20_01190at 1252.346 kb on + strand, within MPMX20_01190at 1252.346 kb on + strand, within MPMX20_01190at 1252.346 kb on + strand, within MPMX20_01190at 1252.346 kb on + strand, within MPMX20_01190at 1252.346 kb on + strand, within MPMX20_01190at 1252.346 kb on + strand, within MPMX20_01190at 1252.346 kb on + strand, within MPMX20_01190at 1252.346 kb on + strand, within MPMX20_01190at 1252.354 kb on - strand, within MPMX20_01190at 1252.354 kb on - strand, within MPMX20_01190at 1252.354 kb on - strand, within MPMX20_01190at 1252.354 kb on - strand, within MPMX20_01190at 1252.354 kb on - strand, within MPMX20_01190at 1252.354 kb on - strand, within MPMX20_01190at 1252.354 kb on - strand, within MPMX20_01190at 1252.355 kb on - strand, within MPMX20_01190at 1252.456 kb on - strand, within MPMX20_01190at 1252.472 kb on + strand, within MPMX20_01190at 1252.485 kb on + strand, within MPMX20_01190at 1252.493 kb on + strand, within MPMX20_01190at 1252.493 kb on - strand, within MPMX20_01190at 1252.548 kb on + strand, within MPMX20_01190at 1252.635 kb on + strandat 1252.643 kb on + strandat 1252.651 kb on - strandat 1252.674 kb on - strandat 1252.711 kb on + strandat 1252.711 kb on + strandat 1252.711 kb on + strandat 1252.711 kb on + strandat 1252.711 kb on + strandat 1252.719 kb on - strandat 1252.719 kb on - strandat 1252.719 kb on - strandat 1252.729 kb on - strandat 1252.729 kb on - strandat 1252.736 kb on - strandat 1252.761 kb on + strandat 1252.768 kb on - strandat 1252.774 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gelatin (C)
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1,249,977 - MPMX20_01187 0.75 +0.9
1,249,977 - MPMX20_01187 0.75 +0.6
1,249,987 - MPMX20_01187 0.75 +0.3
1,250,019 + MPMX20_01187 0.77 -0.8
1,250,037 + MPMX20_01187 0.78 -3.3
1,250,037 - MPMX20_01187 0.78 -0.5
1,250,062 + MPMX20_01187 0.80 +0.2
1,250,062 + MPMX20_01187 0.80 -1.5
1,250,062 + MPMX20_01187 0.80 -0.6
1,250,115 - MPMX20_01187 0.83 -3.8
1,250,130 - MPMX20_01187 0.83 -0.0
1,250,131 + MPMX20_01187 0.83 +0.6
1,250,203 - MPMX20_01187 0.87 -0.9
1,250,250 - +0.9
1,250,327 + +0.7
1,250,335 - -0.2
1,250,350 + +0.4
1,250,363 - -2.5
1,250,367 + +2.4
1,250,385 + +0.1
1,250,405 + -1.7
1,250,415 - +0.8
1,250,603 - MPMX20_01188 0.31 -1.5
1,250,679 + MPMX20_01188 0.55 +0.4
1,250,687 - MPMX20_01188 0.58 +0.3
1,250,687 - MPMX20_01188 0.58 +1.1
1,250,687 - MPMX20_01188 0.58 -0.6
1,250,712 - MPMX20_01188 0.66 -3.0
1,250,760 + MPMX20_01188 0.81 +1.8
1,250,768 - MPMX20_01188 0.83 -1.5
1,250,805 + -0.3
1,250,805 + +1.8
1,250,805 + +1.0
1,250,805 + -1.0
1,250,829 + +1.1
1,250,848 - +1.1
1,250,876 + +0.0
1,250,876 + -0.6
1,250,876 + -2.9
1,250,889 + -2.1
1,250,955 + -2.0
1,250,963 - +0.5
1,250,963 - -4.1
1,250,963 - +0.6
1,250,990 + -0.1
1,251,049 + -0.3
1,251,049 + -3.7
1,251,059 + MPMX20_01189 0.10 -1.9
1,251,067 - MPMX20_01189 0.11 -0.1
1,251,095 + MPMX20_01189 0.15 -0.3
1,251,101 + MPMX20_01189 0.15 +0.8
1,251,104 + MPMX20_01189 0.16 -1.6
1,251,117 - MPMX20_01189 0.17 +0.5
1,251,133 + MPMX20_01189 0.19 -1.1
1,251,210 - MPMX20_01189 0.28 -0.8
1,251,227 + MPMX20_01189 0.30 +0.3
1,251,235 - MPMX20_01189 0.31 +1.8
1,251,253 - MPMX20_01189 0.33 +0.5
1,251,382 - MPMX20_01189 0.49 -2.5
1,251,382 - MPMX20_01189 0.49 -0.8
1,251,382 - MPMX20_01189 0.49 -2.7
1,251,417 - MPMX20_01189 0.53 -0.8
1,251,427 - MPMX20_01189 0.54 +0.5
1,251,471 - MPMX20_01189 0.59 -2.8
1,251,480 + MPMX20_01189 0.61 +0.7
1,251,498 - MPMX20_01189 0.63 -2.8
1,251,506 - MPMX20_01189 0.64 +1.2
1,251,506 - MPMX20_01189 0.64 -3.5
1,251,508 + MPMX20_01189 0.64 -1.0
1,251,516 - MPMX20_01189 0.65 -2.5
1,251,540 + MPMX20_01189 0.68 -0.8
1,251,540 - MPMX20_01189 0.68 +0.2
1,251,540 - MPMX20_01189 0.68 -0.8
1,251,540 - MPMX20_01189 0.68 +1.0
1,251,613 - MPMX20_01189 0.76 -2.6
1,251,618 + MPMX20_01189 0.77 -0.6
1,251,626 - MPMX20_01189 0.78 -1.2
1,251,629 + MPMX20_01189 0.78 -0.5
1,251,642 - MPMX20_01189 0.80 +0.6
1,251,652 - MPMX20_01189 0.81 +1.3
1,251,658 + MPMX20_01189 0.82 -2.7
1,251,659 - MPMX20_01189 0.82 -1.1
1,251,666 - MPMX20_01189 0.83 -0.9
1,251,668 + MPMX20_01189 0.83 -0.3
1,251,669 - MPMX20_01189 0.83 +0.0
1,251,676 + MPMX20_01189 0.84 +0.1
1,251,677 - MPMX20_01189 0.84 -4.0
1,251,684 - MPMX20_01189 0.85 -1.6
1,251,687 + MPMX20_01189 0.85 +2.6
1,251,690 - MPMX20_01189 0.86 -1.1
1,251,700 - MPMX20_01189 0.87 +0.6
1,251,704 + MPMX20_01189 0.87 -2.2
1,251,723 + MPMX20_01189 0.90 -0.1
1,251,733 + -0.2
1,251,768 + -2.4
1,251,776 - -4.3
1,251,783 - +0.0
1,251,802 - -1.0
1,251,845 - +0.1
1,251,873 + +1.3
1,251,886 + +0.2
1,251,893 - -0.1
1,251,925 + +1.6
1,251,933 - +0.0
1,251,938 + -1.9
1,252,040 + -0.2
1,252,040 + +1.1
1,252,048 - +3.3
1,252,048 - -0.5
1,252,048 - +1.7
1,252,138 - MPMX20_01190 0.18 -1.8
1,252,151 + MPMX20_01190 0.20 +2.5
1,252,166 + MPMX20_01190 0.22 -0.4
1,252,166 + MPMX20_01190 0.22 +0.4
1,252,166 + MPMX20_01190 0.22 +1.6
1,252,166 + MPMX20_01190 0.22 +0.1
1,252,166 + MPMX20_01190 0.22 -2.8
1,252,166 + MPMX20_01190 0.22 +0.5
1,252,166 + MPMX20_01190 0.22 +0.4
1,252,166 + MPMX20_01190 0.22 -1.5
1,252,166 + MPMX20_01190 0.22 -1.4
1,252,166 + MPMX20_01190 0.22 +1.7
1,252,166 + MPMX20_01190 0.22 +2.0
1,252,174 - MPMX20_01190 0.23 -3.0
1,252,174 - MPMX20_01190 0.23 +1.6
1,252,174 - MPMX20_01190 0.23 -0.2
1,252,174 - MPMX20_01190 0.23 +1.6
1,252,174 - MPMX20_01190 0.23 -1.7
1,252,174 - MPMX20_01190 0.23 -0.3
1,252,176 + MPMX20_01190 0.24 -2.9
1,252,184 - MPMX20_01190 0.25 -0.5
1,252,189 + MPMX20_01190 0.26 +0.0
1,252,198 - MPMX20_01190 0.27 +1.4
1,252,221 + MPMX20_01190 0.30 +1.3
1,252,221 + MPMX20_01190 0.30 +1.7
1,252,221 + MPMX20_01190 0.30 -2.8
1,252,221 + MPMX20_01190 0.30 +0.9
1,252,221 + MPMX20_01190 0.30 -1.3
1,252,229 - MPMX20_01190 0.32 +2.1
1,252,229 - MPMX20_01190 0.32 -3.8
1,252,229 - MPMX20_01190 0.32 +0.2
1,252,229 - MPMX20_01190 0.32 -2.9
1,252,229 - MPMX20_01190 0.32 +2.5
1,252,229 - MPMX20_01190 0.32 -0.2
1,252,262 + MPMX20_01190 0.36 +1.1
1,252,264 + MPMX20_01190 0.37 -3.0
1,252,278 + MPMX20_01190 0.39 -3.4
1,252,302 + MPMX20_01190 0.42 -0.2
1,252,346 + MPMX20_01190 0.49 +1.5
1,252,346 + MPMX20_01190 0.49 +1.3
1,252,346 + MPMX20_01190 0.49 +0.3
1,252,346 + MPMX20_01190 0.49 -2.0
1,252,346 + MPMX20_01190 0.49 -0.6
1,252,346 + MPMX20_01190 0.49 +0.0
1,252,346 + MPMX20_01190 0.49 +1.0
1,252,346 + MPMX20_01190 0.49 -0.3
1,252,346 + MPMX20_01190 0.49 -1.3
1,252,346 + MPMX20_01190 0.49 +1.1
1,252,354 - MPMX20_01190 0.50 +0.9
1,252,354 - MPMX20_01190 0.50 +0.7
1,252,354 - MPMX20_01190 0.50 +0.6
1,252,354 - MPMX20_01190 0.50 -0.3
1,252,354 - MPMX20_01190 0.50 +0.9
1,252,354 - MPMX20_01190 0.50 -1.3
1,252,354 - MPMX20_01190 0.50 -0.1
1,252,355 - MPMX20_01190 0.50 +0.5
1,252,456 - MPMX20_01190 0.65 -2.6
1,252,472 + MPMX20_01190 0.67 -0.1
1,252,485 + MPMX20_01190 0.69 +1.1
1,252,493 + MPMX20_01190 0.71 -1.8
1,252,493 - MPMX20_01190 0.71 -0.2
1,252,548 + MPMX20_01190 0.79 +0.7
1,252,635 + +0.9
1,252,643 + +0.7
1,252,651 - +0.5
1,252,674 - +0.4
1,252,711 + -0.3
1,252,711 + -1.1
1,252,711 + +1.2
1,252,711 + -2.4
1,252,711 + +0.8
1,252,719 - -0.3
1,252,719 - +0.9
1,252,719 - -1.8
1,252,729 - +0.3
1,252,729 - -3.2
1,252,736 - +1.4
1,252,761 + -0.6
1,252,768 - +0.7
1,252,774 - -1.0

Or see this region's nucleotide sequence