Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00530

Experiment: Carnitine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00528 and MPMX20_00529 are separated by 77 nucleotidesMPMX20_00529 and MPMX20_00530 are separated by 277 nucleotidesMPMX20_00530 and MPMX20_00531 are separated by 138 nucleotides MPMX20_00528: MPMX20_00528 - putative licABCH operon regulator, at 543,922 to 545,832 _00528 MPMX20_00529: MPMX20_00529 - Antitoxin RelB, at 545,910 to 546,152 _00529 MPMX20_00530: MPMX20_00530 - Anaerobic ribonucleoside-triphosphate reductase-activating protein, at 546,430 to 546,894 _00530 MPMX20_00531: MPMX20_00531 - Anaerobic ribonucleoside-triphosphate reductase, at 547,033 to 549,171 _00531 Position (kb) 546 547Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 545.462 kb on + strand, within MPMX20_00528at 545.481 kb on + strand, within MPMX20_00528at 545.481 kb on + strand, within MPMX20_00528at 545.481 kb on + strand, within MPMX20_00528at 545.484 kb on - strand, within MPMX20_00528at 545.489 kb on - strand, within MPMX20_00528at 545.489 kb on - strand, within MPMX20_00528at 545.489 kb on - strand, within MPMX20_00528at 545.544 kb on + strand, within MPMX20_00528at 545.567 kb on + strand, within MPMX20_00528at 545.585 kb on + strand, within MPMX20_00528at 545.593 kb on - strand, within MPMX20_00528at 545.593 kb on - strand, within MPMX20_00528at 545.593 kb on - strand, within MPMX20_00528at 545.613 kb on + strand, within MPMX20_00528at 545.621 kb on - strand, within MPMX20_00528at 545.621 kb on - strand, within MPMX20_00528at 545.634 kb on + strand, within MPMX20_00528at 545.637 kb on + strand, within MPMX20_00528at 545.645 kb on - strandat 545.759 kb on + strandat 545.764 kb on + strandat 545.767 kb on - strandat 545.962 kb on - strand, within MPMX20_00529at 545.962 kb on - strand, within MPMX20_00529at 545.962 kb on - strand, within MPMX20_00529at 546.058 kb on + strand, within MPMX20_00529at 546.058 kb on + strand, within MPMX20_00529at 546.060 kb on + strand, within MPMX20_00529at 546.060 kb on + strand, within MPMX20_00529at 546.070 kb on + strand, within MPMX20_00529at 546.083 kb on + strand, within MPMX20_00529at 546.083 kb on + strand, within MPMX20_00529at 546.083 kb on + strand, within MPMX20_00529at 546.089 kb on - strand, within MPMX20_00529at 546.091 kb on - strand, within MPMX20_00529at 546.091 kb on - strand, within MPMX20_00529at 546.091 kb on - strand, within MPMX20_00529at 546.091 kb on - strand, within MPMX20_00529at 546.091 kb on - strand, within MPMX20_00529at 546.093 kb on + strand, within MPMX20_00529at 546.101 kb on - strand, within MPMX20_00529at 546.101 kb on - strand, within MPMX20_00529at 546.124 kb on - strand, within MPMX20_00529at 546.138 kb on - strandat 546.144 kb on - strandat 546.173 kb on + strandat 546.181 kb on + strandat 546.185 kb on + strandat 546.185 kb on + strandat 546.189 kb on - strandat 546.193 kb on - strandat 546.193 kb on - strandat 546.195 kb on + strandat 546.203 kb on - strandat 546.203 kb on - strandat 546.245 kb on - strandat 546.249 kb on + strandat 546.249 kb on + strandat 546.249 kb on + strandat 546.257 kb on - strandat 546.257 kb on - strandat 546.263 kb on - strandat 546.342 kb on + strandat 546.345 kb on - strandat 546.347 kb on + strandat 546.350 kb on - strandat 546.350 kb on - strandat 546.350 kb on - strandat 546.356 kb on - strandat 546.362 kb on + strandat 546.370 kb on - strandat 546.376 kb on + strandat 546.428 kb on - strandat 546.447 kb on + strandat 546.475 kb on - strandat 546.475 kb on - strandat 546.475 kb on - strandat 546.485 kb on - strand, within MPMX20_00530at 546.494 kb on - strand, within MPMX20_00530at 546.511 kb on - strand, within MPMX20_00530at 546.524 kb on - strand, within MPMX20_00530at 546.532 kb on + strand, within MPMX20_00530at 546.544 kb on + strand, within MPMX20_00530at 546.547 kb on - strand, within MPMX20_00530at 546.552 kb on - strand, within MPMX20_00530at 546.552 kb on - strand, within MPMX20_00530at 546.557 kb on - strand, within MPMX20_00530at 546.562 kb on - strand, within MPMX20_00530at 546.562 kb on - strand, within MPMX20_00530at 546.590 kb on + strand, within MPMX20_00530at 546.633 kb on + strand, within MPMX20_00530at 546.674 kb on + strand, within MPMX20_00530at 546.692 kb on - strand, within MPMX20_00530at 546.771 kb on - strand, within MPMX20_00530at 546.818 kb on - strand, within MPMX20_00530at 546.820 kb on + strand, within MPMX20_00530at 546.872 kb on + strandat 546.880 kb on - strandat 546.885 kb on - strandat 546.885 kb on - strandat 546.902 kb on + strandat 546.908 kb on + strandat 546.910 kb on - strandat 546.910 kb on - strandat 546.933 kb on + strandat 546.933 kb on + strandat 546.933 kb on + strandat 546.933 kb on + strandat 546.941 kb on - strandat 546.941 kb on - strandat 546.999 kb on - strandat 546.999 kb on - strandat 547.003 kb on + strandat 547.004 kb on + strandat 547.004 kb on + strandat 547.010 kb on + strandat 547.011 kb on - strandat 547.018 kb on - strandat 547.071 kb on + strandat 547.084 kb on - strandat 547.084 kb on - strandat 547.118 kb on - strandat 547.118 kb on - strandat 547.128 kb on - strandat 547.189 kb on + strandat 547.189 kb on + strandat 547.197 kb on - strandat 547.197 kb on - strandat 547.197 kb on - strandat 547.281 kb on + strand, within MPMX20_00531at 547.314 kb on + strand, within MPMX20_00531at 547.314 kb on + strand, within MPMX20_00531at 547.314 kb on + strand, within MPMX20_00531at 547.322 kb on - strand, within MPMX20_00531at 547.368 kb on - strand, within MPMX20_00531at 547.451 kb on + strand, within MPMX20_00531at 547.461 kb on - strand, within MPMX20_00531at 547.482 kb on - strand, within MPMX20_00531at 547.527 kb on + strand, within MPMX20_00531at 547.549 kb on - strand, within MPMX20_00531at 547.551 kb on + strand, within MPMX20_00531at 547.551 kb on + strand, within MPMX20_00531at 547.559 kb on - strand, within MPMX20_00531at 547.559 kb on - strand, within MPMX20_00531at 547.592 kb on - strand, within MPMX20_00531at 547.611 kb on - strand, within MPMX20_00531at 547.638 kb on - strand, within MPMX20_00531at 547.645 kb on + strand, within MPMX20_00531at 547.653 kb on - strand, within MPMX20_00531at 547.747 kb on + strand, within MPMX20_00531at 547.757 kb on + strand, within MPMX20_00531at 547.764 kb on + strand, within MPMX20_00531at 547.764 kb on + strand, within MPMX20_00531at 547.772 kb on + strand, within MPMX20_00531at 547.772 kb on + strand, within MPMX20_00531

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Per-strain Table

Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C)
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545,462 + MPMX20_00528 0.81 +0.5
545,481 + MPMX20_00528 0.82 +0.1
545,481 + MPMX20_00528 0.82 +0.8
545,481 + MPMX20_00528 0.82 -0.9
545,484 - MPMX20_00528 0.82 -0.6
545,489 - MPMX20_00528 0.82 +1.3
545,489 - MPMX20_00528 0.82 +0.4
545,489 - MPMX20_00528 0.82 +1.0
545,544 + MPMX20_00528 0.85 -1.2
545,567 + MPMX20_00528 0.86 +0.6
545,585 + MPMX20_00528 0.87 -1.6
545,593 - MPMX20_00528 0.87 +0.9
545,593 - MPMX20_00528 0.87 -0.2
545,593 - MPMX20_00528 0.87 -0.7
545,613 + MPMX20_00528 0.88 -2.8
545,621 - MPMX20_00528 0.89 -2.7
545,621 - MPMX20_00528 0.89 +0.1
545,634 + MPMX20_00528 0.90 -3.3
545,637 + MPMX20_00528 0.90 +0.5
545,645 - -0.3
545,759 + -0.9
545,764 + -1.1
545,767 - -1.3
545,962 - MPMX20_00529 0.21 -0.1
545,962 - MPMX20_00529 0.21 +1.6
545,962 - MPMX20_00529 0.21 -0.4
546,058 + MPMX20_00529 0.61 +1.5
546,058 + MPMX20_00529 0.61 -1.9
546,060 + MPMX20_00529 0.62 +0.6
546,060 + MPMX20_00529 0.62 -3.7
546,070 + MPMX20_00529 0.66 -0.7
546,083 + MPMX20_00529 0.71 -1.3
546,083 + MPMX20_00529 0.71 +2.0
546,083 + MPMX20_00529 0.71 +0.4
546,089 - MPMX20_00529 0.74 -3.6
546,091 - MPMX20_00529 0.74 -0.8
546,091 - MPMX20_00529 0.74 +0.5
546,091 - MPMX20_00529 0.74 -0.0
546,091 - MPMX20_00529 0.74 -2.2
546,091 - MPMX20_00529 0.74 +0.3
546,093 + MPMX20_00529 0.75 -2.0
546,101 - MPMX20_00529 0.79 -3.1
546,101 - MPMX20_00529 0.79 -2.8
546,124 - MPMX20_00529 0.88 -2.8
546,138 - +2.2
546,144 - -3.5
546,173 + +1.1
546,181 + -1.8
546,185 + -0.6
546,185 + -0.3
546,189 - +0.7
546,193 - +0.1
546,193 - +1.1
546,195 + -1.7
546,203 - +1.6
546,203 - -0.6
546,245 - +2.5
546,249 + -0.5
546,249 + -1.9
546,249 + -2.6
546,257 - +0.7
546,257 - -0.2
546,263 - +2.6
546,342 + -2.7
546,345 - +1.2
546,347 + +1.4
546,350 - -0.1
546,350 - +0.9
546,350 - +0.0
546,356 - +2.6
546,362 + -1.7
546,370 - -2.1
546,376 + -1.7
546,428 - +3.3
546,447 + -3.9
546,475 - -2.0
546,475 - +1.2
546,475 - +1.0
546,485 - MPMX20_00530 0.12 -0.6
546,494 - MPMX20_00530 0.14 +0.0
546,511 - MPMX20_00530 0.17 +1.9
546,524 - MPMX20_00530 0.20 +4.0
546,532 + MPMX20_00530 0.22 -1.3
546,544 + MPMX20_00530 0.25 +0.6
546,547 - MPMX20_00530 0.25 -0.3
546,552 - MPMX20_00530 0.26 +1.0
546,552 - MPMX20_00530 0.26 +1.3
546,557 - MPMX20_00530 0.27 +0.6
546,562 - MPMX20_00530 0.28 +0.7
546,562 - MPMX20_00530 0.28 +0.8
546,590 + MPMX20_00530 0.34 +0.7
546,633 + MPMX20_00530 0.44 +2.3
546,674 + MPMX20_00530 0.52 -1.1
546,692 - MPMX20_00530 0.56 +1.5
546,771 - MPMX20_00530 0.73 -3.4
546,818 - MPMX20_00530 0.83 -0.8
546,820 + MPMX20_00530 0.84 -1.3
546,872 + -2.9
546,880 - +0.5
546,885 - -0.8
546,885 - -2.1
546,902 + +0.3
546,908 + -1.9
546,910 - +0.3
546,910 - +1.2
546,933 + -1.7
546,933 + -0.2
546,933 + +1.0
546,933 + +1.5
546,941 - +2.4
546,941 - +1.5
546,999 - +1.0
546,999 - -0.3
547,003 + -0.9
547,004 + -1.1
547,004 + -3.5
547,010 + +0.6
547,011 - -1.3
547,018 - -0.2
547,071 + -0.7
547,084 - -0.4
547,084 - +1.9
547,118 - -2.0
547,118 - +0.1
547,128 - -1.4
547,189 + -1.7
547,189 + -3.6
547,197 - -0.7
547,197 - +1.4
547,197 - +1.7
547,281 + MPMX20_00531 0.12 -4.4
547,314 + MPMX20_00531 0.13 +1.6
547,314 + MPMX20_00531 0.13 +0.9
547,314 + MPMX20_00531 0.13 -0.6
547,322 - MPMX20_00531 0.14 -1.9
547,368 - MPMX20_00531 0.16 -0.6
547,451 + MPMX20_00531 0.20 +0.1
547,461 - MPMX20_00531 0.20 +0.0
547,482 - MPMX20_00531 0.21 +0.4
547,527 + MPMX20_00531 0.23 -0.9
547,549 - MPMX20_00531 0.24 -1.4
547,551 + MPMX20_00531 0.24 +0.4
547,551 + MPMX20_00531 0.24 +0.2
547,559 - MPMX20_00531 0.25 -2.3
547,559 - MPMX20_00531 0.25 -2.3
547,592 - MPMX20_00531 0.26 +0.6
547,611 - MPMX20_00531 0.27 -3.4
547,638 - MPMX20_00531 0.28 -0.1
547,645 + MPMX20_00531 0.29 +2.9
547,653 - MPMX20_00531 0.29 +2.4
547,747 + MPMX20_00531 0.33 +1.4
547,757 + MPMX20_00531 0.34 +2.4
547,764 + MPMX20_00531 0.34 -2.0
547,764 + MPMX20_00531 0.34 +2.0
547,772 + MPMX20_00531 0.35 +3.2
547,772 + MPMX20_00531 0.35 +1.6

Or see this region's nucleotide sequence