Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02977

Experiment: L-Citrulline (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_02976 and MPMX20_02977 overlap by 4 nucleotidesMPMX20_02977 and MPMX20_02978 are separated by 26 nucleotides MPMX20_02976: MPMX20_02976 - Aerobactin synthase, at 3,108,129 to 3,109,871 _02976 MPMX20_02977: MPMX20_02977 - L-lysine N6-monooxygenase, at 3,109,868 to 3,111,193 _02977 MPMX20_02978: MPMX20_02978 - Ferric aerobactin receptor, at 3,111,220 to 3,113,409 _02978 Position (kb) 3109 3110 3111 3112Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3108.911 kb on + strand, within MPMX20_02976at 3108.998 kb on + strand, within MPMX20_02976at 3109.030 kb on + strand, within MPMX20_02976at 3109.038 kb on - strand, within MPMX20_02976at 3109.038 kb on - strand, within MPMX20_02976at 3109.038 kb on - strand, within MPMX20_02976at 3109.043 kb on - strand, within MPMX20_02976at 3109.080 kb on - strand, within MPMX20_02976at 3109.126 kb on + strand, within MPMX20_02976at 3109.129 kb on - strand, within MPMX20_02976at 3109.144 kb on - strand, within MPMX20_02976at 3109.153 kb on - strand, within MPMX20_02976at 3109.171 kb on + strand, within MPMX20_02976at 3109.203 kb on + strand, within MPMX20_02976at 3109.211 kb on + strand, within MPMX20_02976at 3109.219 kb on - strand, within MPMX20_02976at 3109.226 kb on + strand, within MPMX20_02976at 3109.226 kb on + strand, within MPMX20_02976at 3109.412 kb on + strand, within MPMX20_02976at 3109.507 kb on + strand, within MPMX20_02976at 3109.515 kb on - strand, within MPMX20_02976at 3109.517 kb on + strand, within MPMX20_02976at 3109.517 kb on + strand, within MPMX20_02976at 3109.523 kb on - strand, within MPMX20_02976at 3109.525 kb on - strand, within MPMX20_02976at 3109.525 kb on - strand, within MPMX20_02976at 3109.551 kb on - strand, within MPMX20_02976at 3109.592 kb on + strand, within MPMX20_02976at 3109.610 kb on + strand, within MPMX20_02976at 3109.652 kb on + strand, within MPMX20_02976at 3109.676 kb on + strand, within MPMX20_02976at 3109.676 kb on + strand, within MPMX20_02976at 3109.676 kb on + strand, within MPMX20_02976at 3109.716 kb on - strandat 3109.754 kb on + strandat 3109.777 kb on + strandat 3109.851 kb on + strandat 3109.903 kb on - strandat 3109.955 kb on - strandat 3110.005 kb on - strand, within MPMX20_02977at 3110.016 kb on + strand, within MPMX20_02977at 3110.055 kb on + strand, within MPMX20_02977at 3110.091 kb on + strand, within MPMX20_02977at 3110.091 kb on + strand, within MPMX20_02977at 3110.127 kb on + strand, within MPMX20_02977at 3110.137 kb on + strand, within MPMX20_02977at 3110.137 kb on + strand, within MPMX20_02977at 3110.137 kb on + strand, within MPMX20_02977at 3110.218 kb on + strand, within MPMX20_02977at 3110.218 kb on + strand, within MPMX20_02977at 3110.320 kb on + strand, within MPMX20_02977at 3110.361 kb on + strand, within MPMX20_02977at 3110.432 kb on + strand, within MPMX20_02977at 3110.432 kb on + strand, within MPMX20_02977at 3110.432 kb on + strand, within MPMX20_02977at 3110.432 kb on + strand, within MPMX20_02977at 3110.432 kb on + strand, within MPMX20_02977at 3110.432 kb on + strand, within MPMX20_02977at 3110.432 kb on + strand, within MPMX20_02977at 3110.440 kb on - strand, within MPMX20_02977at 3110.440 kb on - strand, within MPMX20_02977at 3110.440 kb on - strand, within MPMX20_02977at 3110.442 kb on + strand, within MPMX20_02977at 3110.533 kb on + strand, within MPMX20_02977at 3110.594 kb on - strand, within MPMX20_02977at 3110.648 kb on - strand, within MPMX20_02977at 3110.648 kb on - strand, within MPMX20_02977at 3110.648 kb on - strand, within MPMX20_02977at 3110.731 kb on + strand, within MPMX20_02977at 3110.731 kb on + strand, within MPMX20_02977at 3110.731 kb on + strand, within MPMX20_02977at 3110.895 kb on + strand, within MPMX20_02977at 3110.896 kb on - strand, within MPMX20_02977at 3110.973 kb on + strand, within MPMX20_02977at 3111.009 kb on + strand, within MPMX20_02977at 3111.026 kb on + strand, within MPMX20_02977at 3111.034 kb on - strand, within MPMX20_02977at 3111.034 kb on - strand, within MPMX20_02977at 3111.062 kb on + strandat 3111.108 kb on - strandat 3111.116 kb on - strandat 3111.135 kb on - strandat 3111.195 kb on - strandat 3111.218 kb on - strandat 3111.276 kb on - strandat 3111.336 kb on + strandat 3111.341 kb on + strandat 3111.370 kb on - strandat 3111.400 kb on + strandat 3111.407 kb on - strandat 3111.427 kb on + strandat 3111.435 kb on - strandat 3111.457 kb on - strand, within MPMX20_02978at 3111.485 kb on + strand, within MPMX20_02978at 3111.485 kb on + strand, within MPMX20_02978at 3111.493 kb on - strand, within MPMX20_02978at 3111.582 kb on + strand, within MPMX20_02978at 3111.595 kb on - strand, within MPMX20_02978at 3111.595 kb on - strand, within MPMX20_02978at 3111.689 kb on - strand, within MPMX20_02978at 3111.796 kb on - strand, within MPMX20_02978at 3111.806 kb on - strand, within MPMX20_02978at 3111.824 kb on - strand, within MPMX20_02978at 3111.863 kb on + strand, within MPMX20_02978at 3111.881 kb on - strand, within MPMX20_02978at 3111.896 kb on + strand, within MPMX20_02978at 3111.903 kb on - strand, within MPMX20_02978at 3111.914 kb on - strand, within MPMX20_02978at 3111.966 kb on - strand, within MPMX20_02978at 3112.032 kb on - strand, within MPMX20_02978at 3112.032 kb on - strand, within MPMX20_02978at 3112.077 kb on + strand, within MPMX20_02978at 3112.098 kb on + strand, within MPMX20_02978at 3112.105 kb on - strand, within MPMX20_02978at 3112.105 kb on - strand, within MPMX20_02978

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
remove
3,108,911 + MPMX20_02976 0.45 -2.3
3,108,998 + MPMX20_02976 0.50 -4.1
3,109,030 + MPMX20_02976 0.52 -1.7
3,109,038 - MPMX20_02976 0.52 -3.6
3,109,038 - MPMX20_02976 0.52 +1.6
3,109,038 - MPMX20_02976 0.52 -0.1
3,109,043 - MPMX20_02976 0.52 +0.3
3,109,080 - MPMX20_02976 0.55 -1.3
3,109,126 + MPMX20_02976 0.57 -2.1
3,109,129 - MPMX20_02976 0.57 -3.6
3,109,144 - MPMX20_02976 0.58 +0.8
3,109,153 - MPMX20_02976 0.59 +0.2
3,109,171 + MPMX20_02976 0.60 -0.3
3,109,203 + MPMX20_02976 0.62 +0.3
3,109,211 + MPMX20_02976 0.62 -0.5
3,109,219 - MPMX20_02976 0.63 +0.1
3,109,226 + MPMX20_02976 0.63 +0.4
3,109,226 + MPMX20_02976 0.63 +0.2
3,109,412 + MPMX20_02976 0.74 -0.7
3,109,507 + MPMX20_02976 0.79 +0.3
3,109,515 - MPMX20_02976 0.80 +2.4
3,109,517 + MPMX20_02976 0.80 -0.8
3,109,517 + MPMX20_02976 0.80 +0.5
3,109,523 - MPMX20_02976 0.80 +0.7
3,109,525 - MPMX20_02976 0.80 -2.6
3,109,525 - MPMX20_02976 0.80 +0.6
3,109,551 - MPMX20_02976 0.82 +0.2
3,109,592 + MPMX20_02976 0.84 -4.5
3,109,610 + MPMX20_02976 0.85 -0.9
3,109,652 + MPMX20_02976 0.87 +0.3
3,109,676 + MPMX20_02976 0.89 -0.3
3,109,676 + MPMX20_02976 0.89 +0.9
3,109,676 + MPMX20_02976 0.89 -0.9
3,109,716 - +1.3
3,109,754 + +0.4
3,109,777 + -3.4
3,109,851 + +2.0
3,109,903 - -0.5
3,109,955 - -4.3
3,110,005 - MPMX20_02977 0.10 +0.4
3,110,016 + MPMX20_02977 0.11 -0.9
3,110,055 + MPMX20_02977 0.14 -1.8
3,110,091 + MPMX20_02977 0.17 -1.9
3,110,091 + MPMX20_02977 0.17 -0.6
3,110,127 + MPMX20_02977 0.20 +1.1
3,110,137 + MPMX20_02977 0.20 +0.2
3,110,137 + MPMX20_02977 0.20 +0.3
3,110,137 + MPMX20_02977 0.20 -2.0
3,110,218 + MPMX20_02977 0.26 +1.6
3,110,218 + MPMX20_02977 0.26 -1.1
3,110,320 + MPMX20_02977 0.34 -0.3
3,110,361 + MPMX20_02977 0.37 -2.6
3,110,432 + MPMX20_02977 0.43 +1.4
3,110,432 + MPMX20_02977 0.43 +1.5
3,110,432 + MPMX20_02977 0.43 -0.3
3,110,432 + MPMX20_02977 0.43 -2.5
3,110,432 + MPMX20_02977 0.43 -3.0
3,110,432 + MPMX20_02977 0.43 -0.1
3,110,432 + MPMX20_02977 0.43 -0.4
3,110,440 - MPMX20_02977 0.43 +0.6
3,110,440 - MPMX20_02977 0.43 -1.0
3,110,440 - MPMX20_02977 0.43 -0.1
3,110,442 + MPMX20_02977 0.43 -1.3
3,110,533 + MPMX20_02977 0.50 +0.6
3,110,594 - MPMX20_02977 0.55 -1.3
3,110,648 - MPMX20_02977 0.59 -2.3
3,110,648 - MPMX20_02977 0.59 +1.9
3,110,648 - MPMX20_02977 0.59 +1.1
3,110,731 + MPMX20_02977 0.65 -2.6
3,110,731 + MPMX20_02977 0.65 -2.1
3,110,731 + MPMX20_02977 0.65 -0.4
3,110,895 + MPMX20_02977 0.77 -1.2
3,110,896 - MPMX20_02977 0.78 +0.2
3,110,973 + MPMX20_02977 0.83 +1.1
3,111,009 + MPMX20_02977 0.86 -3.5
3,111,026 + MPMX20_02977 0.87 +1.3
3,111,034 - MPMX20_02977 0.88 -1.6
3,111,034 - MPMX20_02977 0.88 +0.8
3,111,062 + +0.1
3,111,108 - +0.1
3,111,116 - -0.1
3,111,135 - +0.5
3,111,195 - -0.2
3,111,218 - -0.0
3,111,276 - +0.5
3,111,336 + -3.5
3,111,341 + +2.7
3,111,370 - +1.1
3,111,400 + -0.1
3,111,407 - -0.9
3,111,427 + +0.9
3,111,435 - -2.9
3,111,457 - MPMX20_02978 0.11 -1.9
3,111,485 + MPMX20_02978 0.12 -1.6
3,111,485 + MPMX20_02978 0.12 -1.6
3,111,493 - MPMX20_02978 0.12 -1.4
3,111,582 + MPMX20_02978 0.17 -2.6
3,111,595 - MPMX20_02978 0.17 -1.0
3,111,595 - MPMX20_02978 0.17 -0.9
3,111,689 - MPMX20_02978 0.21 -1.6
3,111,796 - MPMX20_02978 0.26 +0.3
3,111,806 - MPMX20_02978 0.27 -1.3
3,111,824 - MPMX20_02978 0.28 -2.0
3,111,863 + MPMX20_02978 0.29 -0.3
3,111,881 - MPMX20_02978 0.30 -1.3
3,111,896 + MPMX20_02978 0.31 +0.6
3,111,903 - MPMX20_02978 0.31 -0.0
3,111,914 - MPMX20_02978 0.32 -0.5
3,111,966 - MPMX20_02978 0.34 +1.2
3,112,032 - MPMX20_02978 0.37 -0.7
3,112,032 - MPMX20_02978 0.37 -0.0
3,112,077 + MPMX20_02978 0.39 -1.2
3,112,098 + MPMX20_02978 0.40 -1.9
3,112,105 - MPMX20_02978 0.40 +0.6
3,112,105 - MPMX20_02978 0.40 -4.3

Or see this region's nucleotide sequence