Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02643

Experiment: L-Citrulline (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_02642 and MPMX20_02643 are separated by 124 nucleotidesMPMX20_02643 and MPMX20_02644 are separated by 274 nucleotidesMPMX20_02644 and MPMX20_02645 are separated by 126 nucleotides MPMX20_02642: MPMX20_02642 - hypothetical protein, at 2,786,236 to 2,787,294 _02642 MPMX20_02643: MPMX20_02643 - hypothetical protein, at 2,787,419 to 2,787,694 _02643 MPMX20_02644: MPMX20_02644 - Peptidyl-tRNA hydrolase, at 2,787,969 to 2,788,553 _02644 MPMX20_02645: MPMX20_02645 - Ribosome-binding ATPase YchF, at 2,788,680 to 2,789,774 _02645 Position (kb) 2787 2788Strain fitness (log2 ratio) -3 -2 -1 0 1at 2786.445 kb on - strand, within MPMX20_02642at 2786.466 kb on + strand, within MPMX20_02642at 2786.529 kb on + strand, within MPMX20_02642at 2786.556 kb on - strand, within MPMX20_02642at 2786.556 kb on - strand, within MPMX20_02642at 2786.556 kb on - strand, within MPMX20_02642at 2786.556 kb on - strand, within MPMX20_02642at 2786.556 kb on - strand, within MPMX20_02642at 2786.570 kb on - strand, within MPMX20_02642at 2786.670 kb on + strand, within MPMX20_02642at 2786.678 kb on - strand, within MPMX20_02642at 2786.683 kb on - strand, within MPMX20_02642at 2786.720 kb on + strand, within MPMX20_02642at 2786.728 kb on - strand, within MPMX20_02642at 2786.728 kb on - strand, within MPMX20_02642at 2786.821 kb on + strand, within MPMX20_02642at 2786.829 kb on - strand, within MPMX20_02642at 2786.831 kb on + strand, within MPMX20_02642at 2786.834 kb on - strand, within MPMX20_02642at 2786.839 kb on - strand, within MPMX20_02642at 2786.865 kb on - strand, within MPMX20_02642at 2786.949 kb on - strand, within MPMX20_02642at 2787.151 kb on + strand, within MPMX20_02642at 2787.153 kb on - strand, within MPMX20_02642at 2787.185 kb on - strand, within MPMX20_02642at 2787.196 kb on - strandat 2787.219 kb on - strandat 2787.230 kb on + strandat 2787.272 kb on + strandat 2787.275 kb on + strandat 2787.290 kb on - strandat 2787.326 kb on + strandat 2787.333 kb on + strandat 2787.334 kb on - strandat 2787.334 kb on - strandat 2787.347 kb on - strandat 2787.444 kb on - strandat 2787.464 kb on - strand, within MPMX20_02643at 2787.511 kb on - strand, within MPMX20_02643at 2787.524 kb on + strand, within MPMX20_02643at 2787.529 kb on + strand, within MPMX20_02643at 2787.532 kb on - strand, within MPMX20_02643at 2787.532 kb on - strand, within MPMX20_02643at 2787.532 kb on - strand, within MPMX20_02643at 2787.532 kb on - strand, within MPMX20_02643at 2787.617 kb on + strand, within MPMX20_02643at 2787.625 kb on - strand, within MPMX20_02643at 2787.641 kb on - strand, within MPMX20_02643at 2787.641 kb on - strand, within MPMX20_02643at 2787.643 kb on + strand, within MPMX20_02643at 2787.651 kb on - strand, within MPMX20_02643at 2787.717 kb on - strandat 2787.754 kb on - strandat 2787.801 kb on - strandat 2787.917 kb on + strandat 2788.604 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
remove
2,786,445 - MPMX20_02642 0.20 -3.7
2,786,466 + MPMX20_02642 0.22 +1.2
2,786,529 + MPMX20_02642 0.28 -0.7
2,786,556 - MPMX20_02642 0.30 -1.2
2,786,556 - MPMX20_02642 0.30 -2.2
2,786,556 - MPMX20_02642 0.30 +0.3
2,786,556 - MPMX20_02642 0.30 -2.7
2,786,556 - MPMX20_02642 0.30 +0.4
2,786,570 - MPMX20_02642 0.32 -2.2
2,786,670 + MPMX20_02642 0.41 +1.7
2,786,678 - MPMX20_02642 0.42 +1.2
2,786,683 - MPMX20_02642 0.42 -1.2
2,786,720 + MPMX20_02642 0.46 -1.8
2,786,728 - MPMX20_02642 0.46 +0.9
2,786,728 - MPMX20_02642 0.46 +0.2
2,786,821 + MPMX20_02642 0.55 -2.5
2,786,829 - MPMX20_02642 0.56 +0.9
2,786,831 + MPMX20_02642 0.56 -2.2
2,786,834 - MPMX20_02642 0.56 +0.5
2,786,839 - MPMX20_02642 0.57 +0.7
2,786,865 - MPMX20_02642 0.59 +1.5
2,786,949 - MPMX20_02642 0.67 +1.4
2,787,151 + MPMX20_02642 0.86 -1.0
2,787,153 - MPMX20_02642 0.87 -1.5
2,787,185 - MPMX20_02642 0.90 -1.0
2,787,196 - -0.4
2,787,219 - -1.1
2,787,230 + -3.5
2,787,272 + +0.5
2,787,275 + -0.0
2,787,290 - +1.4
2,787,326 + -1.0
2,787,333 + -1.5
2,787,334 - -0.6
2,787,334 - -1.2
2,787,347 - +0.8
2,787,444 - -0.9
2,787,464 - MPMX20_02643 0.16 -0.3
2,787,511 - MPMX20_02643 0.33 -3.5
2,787,524 + MPMX20_02643 0.38 -3.7
2,787,529 + MPMX20_02643 0.40 -0.0
2,787,532 - MPMX20_02643 0.41 -0.0
2,787,532 - MPMX20_02643 0.41 -1.0
2,787,532 - MPMX20_02643 0.41 -0.6
2,787,532 - MPMX20_02643 0.41 -1.2
2,787,617 + MPMX20_02643 0.72 -3.4
2,787,625 - MPMX20_02643 0.75 -3.1
2,787,641 - MPMX20_02643 0.80 +0.2
2,787,641 - MPMX20_02643 0.80 -1.2
2,787,643 + MPMX20_02643 0.81 -2.6
2,787,651 - MPMX20_02643 0.84 -1.0
2,787,717 - -1.5
2,787,754 - -1.6
2,787,801 - +1.0
2,787,917 + +0.5
2,788,604 - +0.4

Or see this region's nucleotide sequence