Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01487

Experiment: L-Citrulline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01485 and MPMX20_01486 are separated by 117 nucleotidesMPMX20_01486 and MPMX20_01487 are separated by 12 nucleotidesMPMX20_01487 and MPMX20_01488 are separated by 36 nucleotidesMPMX20_01488 and MPMX20_01489 are separated by 250 nucleotides MPMX20_01485: MPMX20_01485 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 1,555,595 to 1,556,371 _01485 MPMX20_01486: MPMX20_01486 - Arsenate reductase, at 1,556,489 to 1,556,920 _01486 MPMX20_01487: MPMX20_01487 - Arsenical pump membrane protein, at 1,556,933 to 1,558,222 _01487 MPMX20_01488: MPMX20_01488 - hypothetical protein, at 1,558,259 to 1,558,579 _01488 MPMX20_01489: MPMX20_01489 - Aspartate/alanine antiporter, at 1,558,830 to 1,560,515 _01489 Position (kb) 1556 1557 1558 1559Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1556.053 kb on + strand, within MPMX20_01485at 1556.088 kb on - strand, within MPMX20_01485at 1556.165 kb on - strand, within MPMX20_01485at 1556.247 kb on + strand, within MPMX20_01485at 1556.247 kb on + strand, within MPMX20_01485at 1556.247 kb on + strand, within MPMX20_01485at 1556.250 kb on - strand, within MPMX20_01485at 1556.253 kb on + strand, within MPMX20_01485at 1556.255 kb on - strand, within MPMX20_01485at 1556.266 kb on + strand, within MPMX20_01485at 1556.271 kb on + strand, within MPMX20_01485at 1556.274 kb on - strand, within MPMX20_01485at 1556.274 kb on - strand, within MPMX20_01485at 1556.326 kb on - strandat 1556.385 kb on + strandat 1556.385 kb on + strandat 1556.388 kb on - strandat 1556.388 kb on - strandat 1556.388 kb on - strandat 1556.388 kb on - strandat 1556.388 kb on - strandat 1556.388 kb on - strandat 1556.473 kb on - strandat 1556.542 kb on - strand, within MPMX20_01486at 1556.598 kb on - strand, within MPMX20_01486at 1556.607 kb on - strand, within MPMX20_01486at 1556.608 kb on + strand, within MPMX20_01486at 1556.608 kb on + strand, within MPMX20_01486at 1556.616 kb on - strand, within MPMX20_01486at 1556.673 kb on - strand, within MPMX20_01486at 1556.781 kb on + strand, within MPMX20_01486at 1556.791 kb on + strand, within MPMX20_01486at 1556.841 kb on + strand, within MPMX20_01486at 1556.860 kb on + strand, within MPMX20_01486at 1556.915 kb on + strandat 1556.923 kb on - strandat 1556.936 kb on - strandat 1556.936 kb on - strandat 1556.946 kb on - strandat 1556.946 kb on - strandat 1556.994 kb on + strandat 1557.001 kb on - strandat 1557.071 kb on - strand, within MPMX20_01487at 1557.094 kb on - strand, within MPMX20_01487at 1557.177 kb on + strand, within MPMX20_01487at 1557.202 kb on - strand, within MPMX20_01487at 1557.255 kb on - strand, within MPMX20_01487at 1557.255 kb on - strand, within MPMX20_01487at 1557.260 kb on - strand, within MPMX20_01487at 1557.277 kb on - strand, within MPMX20_01487at 1557.304 kb on - strand, within MPMX20_01487at 1557.322 kb on + strand, within MPMX20_01487at 1557.335 kb on - strand, within MPMX20_01487at 1557.335 kb on - strand, within MPMX20_01487at 1557.335 kb on - strand, within MPMX20_01487at 1557.337 kb on + strand, within MPMX20_01487at 1557.346 kb on + strand, within MPMX20_01487at 1557.346 kb on - strand, within MPMX20_01487at 1557.471 kb on - strand, within MPMX20_01487at 1557.481 kb on + strand, within MPMX20_01487at 1557.554 kb on - strand, within MPMX20_01487at 1557.600 kb on - strand, within MPMX20_01487at 1557.683 kb on + strand, within MPMX20_01487at 1557.703 kb on + strand, within MPMX20_01487at 1557.712 kb on - strand, within MPMX20_01487at 1557.748 kb on + strand, within MPMX20_01487at 1557.748 kb on + strand, within MPMX20_01487at 1557.777 kb on - strand, within MPMX20_01487at 1557.958 kb on - strand, within MPMX20_01487at 1557.969 kb on - strand, within MPMX20_01487at 1558.070 kb on + strand, within MPMX20_01487at 1558.115 kb on - strandat 1558.115 kb on - strandat 1558.123 kb on + strandat 1558.128 kb on + strandat 1558.154 kb on + strandat 1558.179 kb on + strandat 1558.183 kb on + strandat 1558.298 kb on + strand, within MPMX20_01488at 1558.306 kb on - strand, within MPMX20_01488at 1558.454 kb on - strand, within MPMX20_01488at 1558.454 kb on - strand, within MPMX20_01488at 1558.511 kb on - strand, within MPMX20_01488at 1558.614 kb on + strandat 1558.709 kb on + strandat 1558.821 kb on + strandat 1558.821 kb on + strandat 1558.829 kb on - strandat 1558.829 kb on - strandat 1558.829 kb on - strandat 1558.838 kb on + strandat 1558.914 kb on + strandat 1558.917 kb on - strandat 1558.917 kb on - strandat 1558.922 kb on - strandat 1558.922 kb on - strandat 1559.035 kb on - strand, within MPMX20_01489at 1559.171 kb on + strand, within MPMX20_01489at 1559.179 kb on - strand, within MPMX20_01489

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
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1,556,053 + MPMX20_01485 0.59 -3.5
1,556,088 - MPMX20_01485 0.63 -0.8
1,556,165 - MPMX20_01485 0.73 -1.6
1,556,247 + MPMX20_01485 0.84 +1.0
1,556,247 + MPMX20_01485 0.84 +0.5
1,556,247 + MPMX20_01485 0.84 +1.5
1,556,250 - MPMX20_01485 0.84 +1.6
1,556,253 + MPMX20_01485 0.85 +0.3
1,556,255 - MPMX20_01485 0.85 -0.3
1,556,266 + MPMX20_01485 0.86 -0.2
1,556,271 + MPMX20_01485 0.87 +0.8
1,556,274 - MPMX20_01485 0.87 +0.9
1,556,274 - MPMX20_01485 0.87 +0.1
1,556,326 - +0.1
1,556,385 + +1.2
1,556,385 + -0.7
1,556,388 - -0.6
1,556,388 - +0.0
1,556,388 - +0.8
1,556,388 - -3.1
1,556,388 - -0.6
1,556,388 - -2.5
1,556,473 - -3.9
1,556,542 - MPMX20_01486 0.12 -1.4
1,556,598 - MPMX20_01486 0.25 -3.7
1,556,607 - MPMX20_01486 0.27 -1.6
1,556,608 + MPMX20_01486 0.28 +0.8
1,556,608 + MPMX20_01486 0.28 -0.6
1,556,616 - MPMX20_01486 0.29 -1.0
1,556,673 - MPMX20_01486 0.43 +1.6
1,556,781 + MPMX20_01486 0.68 -4.5
1,556,791 + MPMX20_01486 0.70 -1.7
1,556,841 + MPMX20_01486 0.81 -0.0
1,556,860 + MPMX20_01486 0.86 -4.6
1,556,915 + +0.9
1,556,923 - -1.9
1,556,936 - +1.4
1,556,936 - -4.2
1,556,946 - -0.8
1,556,946 - +1.4
1,556,994 + +0.6
1,557,001 - -0.4
1,557,071 - MPMX20_01487 0.11 -1.9
1,557,094 - MPMX20_01487 0.12 +1.5
1,557,177 + MPMX20_01487 0.19 -0.7
1,557,202 - MPMX20_01487 0.21 +1.9
1,557,255 - MPMX20_01487 0.25 +0.2
1,557,255 - MPMX20_01487 0.25 +0.0
1,557,260 - MPMX20_01487 0.25 +3.0
1,557,277 - MPMX20_01487 0.27 +1.7
1,557,304 - MPMX20_01487 0.29 +0.2
1,557,322 + MPMX20_01487 0.30 +0.2
1,557,335 - MPMX20_01487 0.31 -0.7
1,557,335 - MPMX20_01487 0.31 +1.2
1,557,335 - MPMX20_01487 0.31 +0.1
1,557,337 + MPMX20_01487 0.31 +0.1
1,557,346 + MPMX20_01487 0.32 -1.9
1,557,346 - MPMX20_01487 0.32 -2.9
1,557,471 - MPMX20_01487 0.42 -2.3
1,557,481 + MPMX20_01487 0.42 +0.3
1,557,554 - MPMX20_01487 0.48 -3.3
1,557,600 - MPMX20_01487 0.52 +0.7
1,557,683 + MPMX20_01487 0.58 -1.7
1,557,703 + MPMX20_01487 0.60 -1.6
1,557,712 - MPMX20_01487 0.60 +0.0
1,557,748 + MPMX20_01487 0.63 +0.1
1,557,748 + MPMX20_01487 0.63 -0.4
1,557,777 - MPMX20_01487 0.65 -0.1
1,557,958 - MPMX20_01487 0.79 +2.7
1,557,969 - MPMX20_01487 0.80 -4.1
1,558,070 + MPMX20_01487 0.88 -0.6
1,558,115 - -0.3
1,558,115 - -2.3
1,558,123 + +0.2
1,558,128 + +0.7
1,558,154 + +1.8
1,558,179 + -1.1
1,558,183 + -1.7
1,558,298 + MPMX20_01488 0.12 +0.7
1,558,306 - MPMX20_01488 0.15 -1.2
1,558,454 - MPMX20_01488 0.61 -0.6
1,558,454 - MPMX20_01488 0.61 +0.7
1,558,511 - MPMX20_01488 0.79 -2.3
1,558,614 + -0.6
1,558,709 + -0.8
1,558,821 + -0.4
1,558,821 + -1.1
1,558,829 - -1.2
1,558,829 - -3.1
1,558,829 - +1.0
1,558,838 + -0.9
1,558,914 + -0.5
1,558,917 - -2.6
1,558,917 - -1.4
1,558,922 - -0.6
1,558,922 - +0.1
1,559,035 - MPMX20_01489 0.12 +0.2
1,559,171 + MPMX20_01489 0.20 -3.1
1,559,179 - MPMX20_01489 0.21 +0.7

Or see this region's nucleotide sequence