Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04468

Experiment: Gly-DL-Asp (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04467 and MPMX20_04468 are separated by 374 nucleotidesMPMX20_04468 and MPMX20_04469 are separated by 43 nucleotides MPMX20_04467: MPMX20_04467 - Diaminopimelate epimerase, at 4,671,151 to 4,671,975 _04467 MPMX20_04468: MPMX20_04468 - Iron-sulfur cluster assembly protein CyaY, at 4,672,350 to 4,672,670 _04468 MPMX20_04469: MPMX20_04469 - Adenylate cyclase, at 4,672,714 to 4,675,257 _04469 Position (kb) 4672 4673Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4671.462 kb on - strand, within MPMX20_04467at 4671.474 kb on + strand, within MPMX20_04467at 4671.503 kb on + strand, within MPMX20_04467at 4671.526 kb on + strand, within MPMX20_04467at 4671.534 kb on - strand, within MPMX20_04467at 4671.534 kb on - strand, within MPMX20_04467at 4671.595 kb on + strand, within MPMX20_04467at 4671.596 kb on + strand, within MPMX20_04467at 4671.611 kb on - strand, within MPMX20_04467at 4671.653 kb on + strand, within MPMX20_04467at 4671.740 kb on - strand, within MPMX20_04467at 4671.776 kb on - strand, within MPMX20_04467at 4671.776 kb on - strand, within MPMX20_04467at 4671.841 kb on - strand, within MPMX20_04467at 4671.866 kb on - strand, within MPMX20_04467at 4671.891 kb on + strand, within MPMX20_04467at 4672.073 kb on + strandat 4672.081 kb on - strandat 4672.081 kb on - strandat 4672.093 kb on + strandat 4672.101 kb on - strandat 4672.101 kb on - strandat 4672.141 kb on + strandat 4672.151 kb on + strandat 4672.151 kb on + strandat 4672.151 kb on + strandat 4672.173 kb on - strandat 4672.310 kb on + strandat 4672.318 kb on - strandat 4672.384 kb on + strand, within MPMX20_04468at 4672.384 kb on + strand, within MPMX20_04468at 4672.384 kb on + strand, within MPMX20_04468at 4672.384 kb on + strand, within MPMX20_04468at 4672.384 kb on + strand, within MPMX20_04468at 4672.385 kb on - strand, within MPMX20_04468at 4672.392 kb on - strand, within MPMX20_04468at 4672.392 kb on - strand, within MPMX20_04468at 4672.392 kb on - strand, within MPMX20_04468at 4672.392 kb on - strand, within MPMX20_04468at 4672.404 kb on - strand, within MPMX20_04468at 4672.461 kb on + strand, within MPMX20_04468at 4672.467 kb on + strand, within MPMX20_04468at 4672.526 kb on + strand, within MPMX20_04468at 4672.526 kb on + strand, within MPMX20_04468at 4672.574 kb on + strand, within MPMX20_04468at 4672.607 kb on + strand, within MPMX20_04468at 4672.628 kb on + strand, within MPMX20_04468at 4672.628 kb on + strand, within MPMX20_04468at 4672.680 kb on + strandat 4672.692 kb on + strandat 4672.693 kb on - strandat 4672.747 kb on + strandat 4672.754 kb on - strandat 4672.944 kb on - strandat 4672.981 kb on + strand, within MPMX20_04469at 4673.026 kb on + strand, within MPMX20_04469at 4673.204 kb on - strand, within MPMX20_04469at 4673.268 kb on + strand, within MPMX20_04469at 4673.278 kb on + strand, within MPMX20_04469at 4673.343 kb on + strand, within MPMX20_04469at 4673.343 kb on + strand, within MPMX20_04469at 4673.343 kb on - strand, within MPMX20_04469at 4673.351 kb on - strand, within MPMX20_04469at 4673.480 kb on - strand, within MPMX20_04469at 4673.494 kb on + strand, within MPMX20_04469

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (C)
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4,671,462 - MPMX20_04467 0.38 -2.7
4,671,474 + MPMX20_04467 0.39 -0.1
4,671,503 + MPMX20_04467 0.43 -1.4
4,671,526 + MPMX20_04467 0.45 -3.6
4,671,534 - MPMX20_04467 0.46 -4.5
4,671,534 - MPMX20_04467 0.46 +0.2
4,671,595 + MPMX20_04467 0.54 -2.0
4,671,596 + MPMX20_04467 0.54 +2.1
4,671,611 - MPMX20_04467 0.56 +0.1
4,671,653 + MPMX20_04467 0.61 -1.0
4,671,740 - MPMX20_04467 0.71 +0.1
4,671,776 - MPMX20_04467 0.76 -3.1
4,671,776 - MPMX20_04467 0.76 -1.0
4,671,841 - MPMX20_04467 0.84 +0.2
4,671,866 - MPMX20_04467 0.87 -1.2
4,671,891 + MPMX20_04467 0.90 -1.6
4,672,073 + -0.1
4,672,081 - +0.4
4,672,081 - +0.8
4,672,093 + +0.6
4,672,101 - +1.3
4,672,101 - -1.0
4,672,141 + -0.4
4,672,151 + -1.1
4,672,151 + -1.3
4,672,151 + +1.1
4,672,173 - +0.6
4,672,310 + -0.1
4,672,318 - -2.7
4,672,384 + MPMX20_04468 0.11 +0.3
4,672,384 + MPMX20_04468 0.11 -1.1
4,672,384 + MPMX20_04468 0.11 -1.2
4,672,384 + MPMX20_04468 0.11 -1.2
4,672,384 + MPMX20_04468 0.11 -1.3
4,672,385 - MPMX20_04468 0.11 +0.3
4,672,392 - MPMX20_04468 0.13 +0.1
4,672,392 - MPMX20_04468 0.13 -0.5
4,672,392 - MPMX20_04468 0.13 +1.1
4,672,392 - MPMX20_04468 0.13 -1.6
4,672,404 - MPMX20_04468 0.17 +0.3
4,672,461 + MPMX20_04468 0.35 -1.2
4,672,467 + MPMX20_04468 0.36 +1.2
4,672,526 + MPMX20_04468 0.55 +0.1
4,672,526 + MPMX20_04468 0.55 +0.7
4,672,574 + MPMX20_04468 0.70 +0.3
4,672,607 + MPMX20_04468 0.80 -0.9
4,672,628 + MPMX20_04468 0.87 +0.2
4,672,628 + MPMX20_04468 0.87 +2.4
4,672,680 + +0.3
4,672,692 + +0.8
4,672,693 - -0.4
4,672,747 + -0.5
4,672,754 - -1.0
4,672,944 - -1.9
4,672,981 + MPMX20_04469 0.10 -0.6
4,673,026 + MPMX20_04469 0.12 -1.5
4,673,204 - MPMX20_04469 0.19 +1.3
4,673,268 + MPMX20_04469 0.22 -2.1
4,673,278 + MPMX20_04469 0.22 -2.2
4,673,343 + MPMX20_04469 0.25 -1.2
4,673,343 + MPMX20_04469 0.25 -1.2
4,673,343 - MPMX20_04469 0.25 -1.1
4,673,351 - MPMX20_04469 0.25 -2.3
4,673,480 - MPMX20_04469 0.30 -1.2
4,673,494 + MPMX20_04469 0.31 -1.2

Or see this region's nucleotide sequence