Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01151

Experiment: Gly-DL-Asp (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01149 and MPMX20_01150 are separated by 44 nucleotidesMPMX20_01150 and MPMX20_01151 are separated by 70 nucleotidesMPMX20_01151 and MPMX20_01152 are separated by 103 nucleotides MPMX20_01149: MPMX20_01149 - Potassium binding protein Kbp, at 1,211,662 to 1,212,111 _01149 MPMX20_01150: MPMX20_01150 - hypothetical protein, at 1,212,156 to 1,212,551 _01150 MPMX20_01151: MPMX20_01151 - HTH-type transcriptional activator RhaS, at 1,212,622 to 1,213,542 _01151 MPMX20_01152: MPMX20_01152 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 1,213,646 to 1,214,479 _01152 Position (kb) 1212 1213 1214Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1211.634 kb on + strandat 1211.729 kb on + strand, within MPMX20_01149at 1211.768 kb on + strand, within MPMX20_01149at 1211.768 kb on + strand, within MPMX20_01149at 1211.768 kb on + strand, within MPMX20_01149at 1211.768 kb on + strand, within MPMX20_01149at 1211.768 kb on + strand, within MPMX20_01149at 1211.768 kb on + strand, within MPMX20_01149at 1211.776 kb on - strand, within MPMX20_01149at 1211.776 kb on - strand, within MPMX20_01149at 1211.776 kb on - strand, within MPMX20_01149at 1211.776 kb on - strand, within MPMX20_01149at 1211.793 kb on + strand, within MPMX20_01149at 1211.897 kb on + strand, within MPMX20_01149at 1211.908 kb on + strand, within MPMX20_01149at 1211.938 kb on - strand, within MPMX20_01149at 1211.952 kb on + strand, within MPMX20_01149at 1211.972 kb on + strand, within MPMX20_01149at 1211.980 kb on - strand, within MPMX20_01149at 1212.001 kb on + strand, within MPMX20_01149at 1212.011 kb on - strand, within MPMX20_01149at 1212.127 kb on - strandat 1212.218 kb on - strand, within MPMX20_01150at 1212.225 kb on + strand, within MPMX20_01150at 1212.331 kb on - strand, within MPMX20_01150at 1212.353 kb on + strand, within MPMX20_01150at 1212.353 kb on + strand, within MPMX20_01150at 1212.371 kb on - strand, within MPMX20_01150at 1212.421 kb on - strand, within MPMX20_01150at 1212.474 kb on - strand, within MPMX20_01150at 1212.474 kb on - strand, within MPMX20_01150at 1212.482 kb on - strand, within MPMX20_01150at 1212.487 kb on + strand, within MPMX20_01150at 1212.489 kb on - strand, within MPMX20_01150at 1212.509 kb on - strand, within MPMX20_01150at 1212.539 kb on + strandat 1212.539 kb on + strandat 1212.541 kb on - strandat 1212.566 kb on - strandat 1212.578 kb on + strandat 1212.578 kb on + strandat 1212.578 kb on + strandat 1212.578 kb on + strandat 1212.586 kb on - strandat 1212.586 kb on - strandat 1212.591 kb on - strandat 1212.591 kb on - strandat 1212.593 kb on + strandat 1212.596 kb on - strandat 1212.600 kb on + strandat 1212.600 kb on + strandat 1212.600 kb on + strandat 1212.603 kb on - strandat 1212.608 kb on - strandat 1212.608 kb on - strandat 1212.619 kb on + strandat 1212.619 kb on + strandat 1212.621 kb on - strandat 1212.621 kb on - strandat 1212.713 kb on + strandat 1212.734 kb on + strand, within MPMX20_01151at 1212.858 kb on + strand, within MPMX20_01151at 1212.858 kb on + strand, within MPMX20_01151at 1212.858 kb on + strand, within MPMX20_01151at 1212.858 kb on + strand, within MPMX20_01151at 1212.882 kb on + strand, within MPMX20_01151at 1212.996 kb on + strand, within MPMX20_01151at 1213.025 kb on + strand, within MPMX20_01151at 1213.025 kb on + strand, within MPMX20_01151at 1213.033 kb on - strand, within MPMX20_01151at 1213.033 kb on - strand, within MPMX20_01151at 1213.033 kb on - strand, within MPMX20_01151at 1213.116 kb on - strand, within MPMX20_01151at 1213.116 kb on - strand, within MPMX20_01151at 1213.194 kb on + strand, within MPMX20_01151at 1213.194 kb on + strand, within MPMX20_01151at 1213.202 kb on - strand, within MPMX20_01151at 1213.207 kb on + strand, within MPMX20_01151at 1213.488 kb on + strandat 1213.489 kb on + strandat 1213.497 kb on - strandat 1213.506 kb on - strandat 1213.601 kb on + strandat 1213.614 kb on - strandat 1213.637 kb on - strandat 1213.713 kb on - strandat 1213.828 kb on - strand, within MPMX20_01152at 1213.854 kb on + strand, within MPMX20_01152at 1213.862 kb on - strand, within MPMX20_01152at 1213.889 kb on + strand, within MPMX20_01152at 1213.899 kb on + strand, within MPMX20_01152at 1213.923 kb on + strand, within MPMX20_01152at 1213.946 kb on + strand, within MPMX20_01152at 1213.946 kb on + strand, within MPMX20_01152at 1213.993 kb on + strand, within MPMX20_01152at 1213.995 kb on - strand, within MPMX20_01152at 1214.001 kb on - strand, within MPMX20_01152at 1214.001 kb on - strand, within MPMX20_01152at 1214.001 kb on - strand, within MPMX20_01152at 1214.013 kb on - strand, within MPMX20_01152at 1214.063 kb on - strand, within MPMX20_01152at 1214.135 kb on - strand, within MPMX20_01152at 1214.168 kb on - strand, within MPMX20_01152at 1214.416 kb on - strandat 1214.461 kb on - strandat 1214.468 kb on + strandat 1214.521 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (C)
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1,211,634 + -0.3
1,211,729 + MPMX20_01149 0.15 -0.3
1,211,768 + MPMX20_01149 0.24 +2.1
1,211,768 + MPMX20_01149 0.24 +1.6
1,211,768 + MPMX20_01149 0.24 +1.3
1,211,768 + MPMX20_01149 0.24 +0.3
1,211,768 + MPMX20_01149 0.24 +2.1
1,211,768 + MPMX20_01149 0.24 -0.0
1,211,776 - MPMX20_01149 0.25 -1.0
1,211,776 - MPMX20_01149 0.25 +3.1
1,211,776 - MPMX20_01149 0.25 +0.8
1,211,776 - MPMX20_01149 0.25 +0.2
1,211,793 + MPMX20_01149 0.29 -0.8
1,211,897 + MPMX20_01149 0.52 +2.1
1,211,908 + MPMX20_01149 0.55 +1.7
1,211,938 - MPMX20_01149 0.61 +1.8
1,211,952 + MPMX20_01149 0.64 -0.9
1,211,972 + MPMX20_01149 0.69 -0.3
1,211,980 - MPMX20_01149 0.71 -0.5
1,212,001 + MPMX20_01149 0.75 +1.0
1,212,011 - MPMX20_01149 0.78 +1.0
1,212,127 - -0.8
1,212,218 - MPMX20_01150 0.16 -2.5
1,212,225 + MPMX20_01150 0.17 -0.0
1,212,331 - MPMX20_01150 0.44 -1.2
1,212,353 + MPMX20_01150 0.50 -1.0
1,212,353 + MPMX20_01150 0.50 +0.2
1,212,371 - MPMX20_01150 0.54 -1.6
1,212,421 - MPMX20_01150 0.67 +0.6
1,212,474 - MPMX20_01150 0.80 -0.3
1,212,474 - MPMX20_01150 0.80 +0.1
1,212,482 - MPMX20_01150 0.82 -0.0
1,212,487 + MPMX20_01150 0.84 -0.3
1,212,489 - MPMX20_01150 0.84 +0.1
1,212,509 - MPMX20_01150 0.89 -0.8
1,212,539 + +0.4
1,212,539 + +1.0
1,212,541 - -3.1
1,212,566 - -2.6
1,212,578 + -0.1
1,212,578 + -1.7
1,212,578 + +0.8
1,212,578 + +2.8
1,212,586 - -0.2
1,212,586 - -2.8
1,212,591 - +0.3
1,212,591 - +3.0
1,212,593 + +2.0
1,212,596 - -1.2
1,212,600 + -0.0
1,212,600 + -1.2
1,212,600 + -0.3
1,212,603 - -2.0
1,212,608 - -0.3
1,212,608 - +0.5
1,212,619 + -1.8
1,212,619 + -0.7
1,212,621 - +0.0
1,212,621 - +0.7
1,212,713 + +0.8
1,212,734 + MPMX20_01151 0.12 +1.1
1,212,858 + MPMX20_01151 0.26 -0.7
1,212,858 + MPMX20_01151 0.26 +0.4
1,212,858 + MPMX20_01151 0.26 -2.4
1,212,858 + MPMX20_01151 0.26 -0.8
1,212,882 + MPMX20_01151 0.28 +0.8
1,212,996 + MPMX20_01151 0.41 +2.7
1,213,025 + MPMX20_01151 0.44 +2.2
1,213,025 + MPMX20_01151 0.44 +0.9
1,213,033 - MPMX20_01151 0.45 +0.2
1,213,033 - MPMX20_01151 0.45 +0.5
1,213,033 - MPMX20_01151 0.45 +0.3
1,213,116 - MPMX20_01151 0.54 -0.6
1,213,116 - MPMX20_01151 0.54 +1.0
1,213,194 + MPMX20_01151 0.62 -0.4
1,213,194 + MPMX20_01151 0.62 +1.1
1,213,202 - MPMX20_01151 0.63 +1.1
1,213,207 + MPMX20_01151 0.64 +0.0
1,213,488 + +1.1
1,213,489 + +0.9
1,213,497 - +0.8
1,213,506 - -0.5
1,213,601 + -0.2
1,213,614 - +1.5
1,213,637 - +0.4
1,213,713 - +0.6
1,213,828 - MPMX20_01152 0.22 +1.1
1,213,854 + MPMX20_01152 0.25 +0.2
1,213,862 - MPMX20_01152 0.26 +1.3
1,213,889 + MPMX20_01152 0.29 -0.4
1,213,899 + MPMX20_01152 0.30 +0.2
1,213,923 + MPMX20_01152 0.33 -0.1
1,213,946 + MPMX20_01152 0.36 +0.9
1,213,946 + MPMX20_01152 0.36 +0.6
1,213,993 + MPMX20_01152 0.42 -1.0
1,213,995 - MPMX20_01152 0.42 +0.7
1,214,001 - MPMX20_01152 0.43 -1.5
1,214,001 - MPMX20_01152 0.43 +0.6
1,214,001 - MPMX20_01152 0.43 +0.1
1,214,013 - MPMX20_01152 0.44 -1.2
1,214,063 - MPMX20_01152 0.50 +0.4
1,214,135 - MPMX20_01152 0.59 +2.1
1,214,168 - MPMX20_01152 0.63 -0.1
1,214,416 - +0.8
1,214,461 - -1.3
1,214,468 + +0.1
1,214,521 + +2.7

Or see this region's nucleotide sequence