Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03777 and MPMX20_03778 are separated by 91 nucleotides MPMX20_03778 and MPMX20_03779 are separated by 49 nucleotides
MPMX20_03777: MPMX20_03777 - Fructose-bisphosphate aldolase class 2, at 3,979,788 to 3,980,867
_03777
MPMX20_03778: MPMX20_03778 - Phosphoglycerate kinase, at 3,980,959 to 3,982,122
_03778
MPMX20_03779: MPMX20_03779 - D-erythrose-4-phosphate dehydrogenase, at 3,982,172 to 3,983,191
_03779
Position (kb)
3980
3981
3982
3983 Strain fitness (log2 ratio)
-2
-1
0
1 at 3980.918 kb on - strand at 3982.167 kb on - strand at 3982.253 kb on - strand at 3982.253 kb on - strand at 3982.253 kb on - strand at 3982.383 kb on - strand, within MPMX20_03779 at 3982.468 kb on + strand, within MPMX20_03779 at 3982.532 kb on + strand, within MPMX20_03779 at 3982.557 kb on - strand, within MPMX20_03779 at 3982.601 kb on - strand, within MPMX20_03779 at 3982.670 kb on - strand, within MPMX20_03779 at 3982.694 kb on - strand, within MPMX20_03779 at 3982.716 kb on - strand, within MPMX20_03779 at 3982.716 kb on - strand, within MPMX20_03779 at 3982.744 kb on - strand, within MPMX20_03779 at 3982.765 kb on + strand, within MPMX20_03779 at 3982.848 kb on + strand, within MPMX20_03779 at 3982.871 kb on - strand, within MPMX20_03779 at 3982.883 kb on + strand, within MPMX20_03779 at 3982.891 kb on - strand, within MPMX20_03779 at 3982.896 kb on - strand, within MPMX20_03779 at 3982.996 kb on - strand, within MPMX20_03779
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 3,980,918 - -2.5 3,982,167 - -1.1 3,982,253 - -0.3 3,982,253 - -0.6 3,982,253 - +0.4 3,982,383 - MPMX20_03779 0.21 -2.2 3,982,468 + MPMX20_03779 0.29 +0.1 3,982,532 + MPMX20_03779 0.35 +1.3 3,982,557 - MPMX20_03779 0.38 -1.1 3,982,601 - MPMX20_03779 0.42 -0.3 3,982,670 - MPMX20_03779 0.49 +0.8 3,982,694 - MPMX20_03779 0.51 +0.2 3,982,716 - MPMX20_03779 0.53 -0.5 3,982,716 - MPMX20_03779 0.53 +1.2 3,982,744 - MPMX20_03779 0.56 +1.2 3,982,765 + MPMX20_03779 0.58 +0.5 3,982,848 + MPMX20_03779 0.66 -1.1 3,982,871 - MPMX20_03779 0.69 -0.2 3,982,883 + MPMX20_03779 0.70 +0.1 3,982,891 - MPMX20_03779 0.70 -0.7 3,982,896 - MPMX20_03779 0.71 -1.6 3,982,996 - MPMX20_03779 0.81 +0.0
Or see this region's nucleotide sequence