Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00805

Experiment: D-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00804 and MPMX20_00805 are separated by 164 nucleotidesMPMX20_00805 and MPMX20_00806 are separated by 537 nucleotides MPMX20_00804: MPMX20_00804 - Inner membrane symporter YicJ, at 839,992 to 841,389 _00804 MPMX20_00805: MPMX20_00805 - Aromatic amino acid transport protein AroP, at 841,554 to 842,924 _00805 MPMX20_00806: MPMX20_00806 - Pyruvate dehydrogenase complex repressor, at 843,462 to 844,226 _00806 Position (kb) 841 842 843Strain fitness (log2 ratio) -2 -1 0 1 2 3at 840.567 kb on + strand, within MPMX20_00804at 840.575 kb on - strand, within MPMX20_00804at 840.577 kb on + strand, within MPMX20_00804at 840.631 kb on - strand, within MPMX20_00804at 840.662 kb on - strand, within MPMX20_00804at 840.665 kb on + strand, within MPMX20_00804at 840.665 kb on + strand, within MPMX20_00804at 840.677 kb on + strand, within MPMX20_00804at 840.763 kb on + strand, within MPMX20_00804at 840.827 kb on - strand, within MPMX20_00804at 840.912 kb on - strand, within MPMX20_00804at 840.998 kb on - strand, within MPMX20_00804at 841.000 kb on - strand, within MPMX20_00804at 841.025 kb on + strand, within MPMX20_00804at 841.031 kb on - strand, within MPMX20_00804at 841.033 kb on - strand, within MPMX20_00804at 841.065 kb on - strand, within MPMX20_00804at 841.086 kb on - strand, within MPMX20_00804at 841.088 kb on + strand, within MPMX20_00804at 841.106 kb on + strand, within MPMX20_00804at 841.106 kb on + strand, within MPMX20_00804at 841.114 kb on - strand, within MPMX20_00804at 841.116 kb on + strand, within MPMX20_00804at 841.116 kb on + strand, within MPMX20_00804at 841.239 kb on + strand, within MPMX20_00804at 841.239 kb on + strand, within MPMX20_00804at 841.239 kb on + strand, within MPMX20_00804at 841.239 kb on + strand, within MPMX20_00804at 841.240 kb on - strand, within MPMX20_00804at 841.240 kb on - strand, within MPMX20_00804at 841.247 kb on - strand, within MPMX20_00804at 841.249 kb on + strand, within MPMX20_00804at 841.254 kb on + strandat 841.254 kb on + strandat 841.324 kb on + strandat 841.382 kb on - strandat 841.395 kb on + strandat 841.412 kb on - strandat 841.462 kb on - strandat 841.462 kb on - strandat 841.712 kb on - strand, within MPMX20_00805at 841.728 kb on - strand, within MPMX20_00805at 841.728 kb on - strand, within MPMX20_00805at 841.728 kb on - strand, within MPMX20_00805at 841.728 kb on - strand, within MPMX20_00805at 841.730 kb on + strand, within MPMX20_00805at 841.730 kb on + strand, within MPMX20_00805at 841.733 kb on - strand, within MPMX20_00805at 841.733 kb on - strand, within MPMX20_00805at 841.746 kb on + strand, within MPMX20_00805at 841.785 kb on - strand, within MPMX20_00805at 841.795 kb on - strand, within MPMX20_00805at 841.795 kb on - strand, within MPMX20_00805at 841.977 kb on - strand, within MPMX20_00805at 841.977 kb on - strand, within MPMX20_00805at 841.985 kb on - strand, within MPMX20_00805at 841.997 kb on + strand, within MPMX20_00805at 841.997 kb on + strand, within MPMX20_00805at 841.997 kb on + strand, within MPMX20_00805at 842.020 kb on - strand, within MPMX20_00805at 842.039 kb on + strand, within MPMX20_00805at 842.157 kb on + strand, within MPMX20_00805at 842.229 kb on + strand, within MPMX20_00805at 842.234 kb on + strand, within MPMX20_00805at 842.234 kb on + strand, within MPMX20_00805at 842.242 kb on - strand, within MPMX20_00805at 842.273 kb on + strand, within MPMX20_00805at 842.273 kb on + strand, within MPMX20_00805at 842.344 kb on + strand, within MPMX20_00805at 842.346 kb on - strand, within MPMX20_00805at 842.372 kb on - strand, within MPMX20_00805at 842.446 kb on + strand, within MPMX20_00805at 842.454 kb on - strand, within MPMX20_00805at 842.461 kb on + strand, within MPMX20_00805at 842.486 kb on + strand, within MPMX20_00805at 842.504 kb on - strand, within MPMX20_00805at 842.626 kb on + strand, within MPMX20_00805at 842.634 kb on + strand, within MPMX20_00805at 842.673 kb on - strand, within MPMX20_00805at 842.697 kb on + strand, within MPMX20_00805at 842.729 kb on - strand, within MPMX20_00805at 842.818 kb on - strandat 842.845 kb on + strandat 842.848 kb on - strandat 842.867 kb on + strandat 842.872 kb on - strandat 843.143 kb on + strandat 843.326 kb on + strandat 843.342 kb on - strandat 843.359 kb on + strandat 843.385 kb on - strandat 843.761 kb on + strand, within MPMX20_00806at 843.805 kb on - strand, within MPMX20_00806at 843.812 kb on + strand, within MPMX20_00806at 843.812 kb on + strand, within MPMX20_00806at 843.820 kb on - strand, within MPMX20_00806at 843.822 kb on + strand, within MPMX20_00806at 843.822 kb on + strand, within MPMX20_00806at 843.822 kb on + strand, within MPMX20_00806at 843.859 kb on + strand, within MPMX20_00806

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (C)
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840,567 + MPMX20_00804 0.41 +0.2
840,575 - MPMX20_00804 0.42 +0.2
840,577 + MPMX20_00804 0.42 -0.1
840,631 - MPMX20_00804 0.46 -1.5
840,662 - MPMX20_00804 0.48 +1.9
840,665 + MPMX20_00804 0.48 +3.0
840,665 + MPMX20_00804 0.48 -0.7
840,677 + MPMX20_00804 0.49 -1.1
840,763 + MPMX20_00804 0.55 +1.5
840,827 - MPMX20_00804 0.60 +0.4
840,912 - MPMX20_00804 0.66 -1.6
840,998 - MPMX20_00804 0.72 +0.9
841,000 - MPMX20_00804 0.72 -0.8
841,025 + MPMX20_00804 0.74 -0.9
841,031 - MPMX20_00804 0.74 -0.2
841,033 - MPMX20_00804 0.74 +0.3
841,065 - MPMX20_00804 0.77 -0.0
841,086 - MPMX20_00804 0.78 -1.5
841,088 + MPMX20_00804 0.78 -0.3
841,106 + MPMX20_00804 0.80 +1.0
841,106 + MPMX20_00804 0.80 +1.4
841,114 - MPMX20_00804 0.80 +0.9
841,116 + MPMX20_00804 0.80 -0.1
841,116 + MPMX20_00804 0.80 +0.8
841,239 + MPMX20_00804 0.89 -1.2
841,239 + MPMX20_00804 0.89 +1.7
841,239 + MPMX20_00804 0.89 +0.1
841,239 + MPMX20_00804 0.89 -1.3
841,240 - MPMX20_00804 0.89 +0.4
841,240 - MPMX20_00804 0.89 +2.0
841,247 - MPMX20_00804 0.90 -1.3
841,249 + MPMX20_00804 0.90 +0.0
841,254 + -0.7
841,254 + +0.2
841,324 + +1.3
841,382 - +0.8
841,395 + +0.3
841,412 - +1.4
841,462 - -1.9
841,462 - -0.4
841,712 - MPMX20_00805 0.12 -0.3
841,728 - MPMX20_00805 0.13 +0.8
841,728 - MPMX20_00805 0.13 -0.0
841,728 - MPMX20_00805 0.13 -0.1
841,728 - MPMX20_00805 0.13 -1.1
841,730 + MPMX20_00805 0.13 +1.0
841,730 + MPMX20_00805 0.13 +0.3
841,733 - MPMX20_00805 0.13 +1.9
841,733 - MPMX20_00805 0.13 +0.3
841,746 + MPMX20_00805 0.14 -0.7
841,785 - MPMX20_00805 0.17 +0.6
841,795 - MPMX20_00805 0.18 -0.7
841,795 - MPMX20_00805 0.18 +0.7
841,977 - MPMX20_00805 0.31 +0.5
841,977 - MPMX20_00805 0.31 +1.4
841,985 - MPMX20_00805 0.31 -0.6
841,997 + MPMX20_00805 0.32 +0.1
841,997 + MPMX20_00805 0.32 -0.5
841,997 + MPMX20_00805 0.32 +1.2
842,020 - MPMX20_00805 0.34 -0.2
842,039 + MPMX20_00805 0.35 +1.5
842,157 + MPMX20_00805 0.44 +0.8
842,229 + MPMX20_00805 0.49 -0.4
842,234 + MPMX20_00805 0.50 -0.2
842,234 + MPMX20_00805 0.50 +0.7
842,242 - MPMX20_00805 0.50 +0.1
842,273 + MPMX20_00805 0.52 -0.8
842,273 + MPMX20_00805 0.52 +0.9
842,344 + MPMX20_00805 0.58 -0.2
842,346 - MPMX20_00805 0.58 -0.2
842,372 - MPMX20_00805 0.60 -0.6
842,446 + MPMX20_00805 0.65 +0.2
842,454 - MPMX20_00805 0.66 -0.1
842,461 + MPMX20_00805 0.66 -0.7
842,486 + MPMX20_00805 0.68 -0.0
842,504 - MPMX20_00805 0.69 +0.6
842,626 + MPMX20_00805 0.78 -0.4
842,634 + MPMX20_00805 0.79 +1.1
842,673 - MPMX20_00805 0.82 -0.2
842,697 + MPMX20_00805 0.83 +0.3
842,729 - MPMX20_00805 0.86 -0.9
842,818 - -1.5
842,845 + -0.9
842,848 - +0.7
842,867 + +0.5
842,872 - -0.3
843,143 + +1.4
843,326 + -0.1
843,342 - -0.1
843,359 + +1.0
843,385 - +0.9
843,761 + MPMX20_00806 0.39 -1.1
843,805 - MPMX20_00806 0.45 -0.1
843,812 + MPMX20_00806 0.46 -0.9
843,812 + MPMX20_00806 0.46 -0.7
843,820 - MPMX20_00806 0.47 -0.4
843,822 + MPMX20_00806 0.47 -0.2
843,822 + MPMX20_00806 0.47 +0.4
843,822 + MPMX20_00806 0.47 -2.6
843,859 + MPMX20_00806 0.52 -1.1

Or see this region's nucleotide sequence