Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00024

Experiment: D-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00023 and MPMX20_00024 are separated by 17 nucleotidesMPMX20_00024 and MPMX20_00025 are separated by 204 nucleotides MPMX20_00023: MPMX20_00023 - D-serine dehydratase, at 23,505 to 24,797 _00023 MPMX20_00024: MPMX20_00024 - D-serine transporter DsdX, at 24,815 to 26,152 _00024 MPMX20_00025: MPMX20_00025 - HTH-type transcriptional regulator DsdC, at 26,357 to 27,283 _00025 Position (kb) 24 25 26 27Strain fitness (log2 ratio) -3 -2 -1 0 1at 23.848 kb on - strand, within MPMX20_00023at 23.848 kb on - strand, within MPMX20_00023at 23.874 kb on + strand, within MPMX20_00023at 23.975 kb on - strand, within MPMX20_00023at 23.987 kb on - strand, within MPMX20_00023at 24.050 kb on + strand, within MPMX20_00023at 24.060 kb on - strand, within MPMX20_00023at 24.066 kb on - strand, within MPMX20_00023at 24.124 kb on - strand, within MPMX20_00023at 24.148 kb on + strand, within MPMX20_00023at 24.148 kb on + strand, within MPMX20_00023at 24.148 kb on + strand, within MPMX20_00023at 24.148 kb on + strand, within MPMX20_00023at 24.148 kb on + strand, within MPMX20_00023at 24.148 kb on + strand, within MPMX20_00023at 24.156 kb on - strand, within MPMX20_00023at 24.156 kb on - strand, within MPMX20_00023at 24.179 kb on + strand, within MPMX20_00023at 24.182 kb on - strand, within MPMX20_00023at 24.228 kb on + strand, within MPMX20_00023at 24.236 kb on - strand, within MPMX20_00023at 24.236 kb on - strand, within MPMX20_00023at 24.242 kb on + strand, within MPMX20_00023at 24.250 kb on - strand, within MPMX20_00023at 24.318 kb on - strand, within MPMX20_00023at 24.386 kb on - strand, within MPMX20_00023at 24.386 kb on - strand, within MPMX20_00023at 24.414 kb on + strand, within MPMX20_00023at 24.422 kb on + strand, within MPMX20_00023at 24.451 kb on - strand, within MPMX20_00023at 24.460 kb on - strand, within MPMX20_00023at 24.509 kb on + strand, within MPMX20_00023at 24.509 kb on + strand, within MPMX20_00023at 24.509 kb on + strand, within MPMX20_00023at 24.517 kb on - strand, within MPMX20_00023at 24.539 kb on - strand, within MPMX20_00023at 24.658 kb on + strand, within MPMX20_00023at 24.668 kb on + strandat 24.671 kb on - strandat 24.673 kb on + strandat 24.692 kb on - strandat 24.710 kb on + strandat 24.710 kb on + strandat 24.710 kb on + strandat 24.718 kb on - strandat 24.887 kb on - strandat 25.008 kb on - strand, within MPMX20_00024at 25.020 kb on - strand, within MPMX20_00024at 25.020 kb on - strand, within MPMX20_00024at 25.087 kb on - strand, within MPMX20_00024at 25.091 kb on + strand, within MPMX20_00024at 25.118 kb on + strand, within MPMX20_00024at 25.134 kb on + strand, within MPMX20_00024at 25.134 kb on + strand, within MPMX20_00024at 25.164 kb on + strand, within MPMX20_00024at 25.164 kb on - strand, within MPMX20_00024at 25.165 kb on - strand, within MPMX20_00024at 25.251 kb on - strand, within MPMX20_00024at 25.273 kb on - strand, within MPMX20_00024at 25.273 kb on - strand, within MPMX20_00024at 25.306 kb on + strand, within MPMX20_00024at 25.308 kb on - strand, within MPMX20_00024at 25.309 kb on + strand, within MPMX20_00024at 25.309 kb on + strand, within MPMX20_00024at 25.336 kb on + strand, within MPMX20_00024at 25.337 kb on - strand, within MPMX20_00024at 25.418 kb on - strand, within MPMX20_00024at 25.457 kb on - strand, within MPMX20_00024at 25.527 kb on + strand, within MPMX20_00024at 25.527 kb on + strand, within MPMX20_00024at 25.628 kb on - strand, within MPMX20_00024at 25.650 kb on + strand, within MPMX20_00024at 25.686 kb on - strand, within MPMX20_00024at 25.686 kb on - strand, within MPMX20_00024at 25.688 kb on + strand, within MPMX20_00024at 25.696 kb on - strand, within MPMX20_00024at 25.707 kb on + strand, within MPMX20_00024at 25.707 kb on + strand, within MPMX20_00024at 25.715 kb on - strand, within MPMX20_00024at 25.715 kb on - strand, within MPMX20_00024at 25.748 kb on - strand, within MPMX20_00024at 25.807 kb on + strand, within MPMX20_00024at 25.823 kb on - strand, within MPMX20_00024at 25.858 kb on + strand, within MPMX20_00024at 25.881 kb on + strand, within MPMX20_00024at 25.910 kb on - strand, within MPMX20_00024at 25.935 kb on - strand, within MPMX20_00024at 25.946 kb on - strand, within MPMX20_00024at 25.993 kb on + strand, within MPMX20_00024at 26.058 kb on + strandat 26.130 kb on - strandat 26.133 kb on + strandat 26.133 kb on + strandat 26.133 kb on + strandat 26.133 kb on + strandat 26.133 kb on + strandat 26.141 kb on - strandat 26.141 kb on - strandat 26.141 kb on - strandat 26.141 kb on - strandat 26.141 kb on - strandat 26.148 kb on + strandat 26.164 kb on + strandat 26.254 kb on + strandat 26.323 kb on + strandat 26.331 kb on - strandat 26.333 kb on + strandat 26.429 kb on - strandat 26.476 kb on - strand, within MPMX20_00025at 26.481 kb on + strand, within MPMX20_00025at 26.484 kb on - strand, within MPMX20_00025at 26.510 kb on - strand, within MPMX20_00025at 26.530 kb on - strand, within MPMX20_00025at 26.532 kb on - strand, within MPMX20_00025at 26.554 kb on + strand, within MPMX20_00025at 26.554 kb on + strand, within MPMX20_00025at 26.575 kb on + strand, within MPMX20_00025at 26.578 kb on + strand, within MPMX20_00025at 26.586 kb on - strand, within MPMX20_00025at 26.675 kb on + strand, within MPMX20_00025at 26.701 kb on + strand, within MPMX20_00025at 26.701 kb on + strand, within MPMX20_00025at 26.701 kb on + strand, within MPMX20_00025at 26.701 kb on + strand, within MPMX20_00025at 26.701 kb on + strand, within MPMX20_00025at 26.709 kb on - strand, within MPMX20_00025at 26.709 kb on - strand, within MPMX20_00025at 26.745 kb on - strand, within MPMX20_00025at 26.770 kb on - strand, within MPMX20_00025at 26.790 kb on - strand, within MPMX20_00025at 26.909 kb on + strand, within MPMX20_00025at 26.947 kb on + strand, within MPMX20_00025at 26.971 kb on + strand, within MPMX20_00025at 26.974 kb on - strand, within MPMX20_00025

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (C)
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23,848 - MPMX20_00023 0.27 -1.9
23,848 - MPMX20_00023 0.27 -1.4
23,874 + MPMX20_00023 0.29 -0.9
23,975 - MPMX20_00023 0.36 -0.3
23,987 - MPMX20_00023 0.37 -0.4
24,050 + MPMX20_00023 0.42 -0.5
24,060 - MPMX20_00023 0.43 -1.4
24,066 - MPMX20_00023 0.43 +0.5
24,124 - MPMX20_00023 0.48 +0.4
24,148 + MPMX20_00023 0.50 +0.8
24,148 + MPMX20_00023 0.50 -0.2
24,148 + MPMX20_00023 0.50 -0.0
24,148 + MPMX20_00023 0.50 -2.7
24,148 + MPMX20_00023 0.50 -0.0
24,148 + MPMX20_00023 0.50 -0.7
24,156 - MPMX20_00023 0.50 +1.0
24,156 - MPMX20_00023 0.50 -0.4
24,179 + MPMX20_00023 0.52 -0.7
24,182 - MPMX20_00023 0.52 +0.2
24,228 + MPMX20_00023 0.56 +0.0
24,236 - MPMX20_00023 0.57 -0.8
24,236 - MPMX20_00023 0.57 -0.4
24,242 + MPMX20_00023 0.57 -0.9
24,250 - MPMX20_00023 0.58 -0.1
24,318 - MPMX20_00023 0.63 +0.2
24,386 - MPMX20_00023 0.68 +0.1
24,386 - MPMX20_00023 0.68 -0.4
24,414 + MPMX20_00023 0.70 -1.3
24,422 + MPMX20_00023 0.71 -0.9
24,451 - MPMX20_00023 0.73 +0.4
24,460 - MPMX20_00023 0.74 -0.9
24,509 + MPMX20_00023 0.78 -0.9
24,509 + MPMX20_00023 0.78 -0.3
24,509 + MPMX20_00023 0.78 +0.4
24,517 - MPMX20_00023 0.78 -1.0
24,539 - MPMX20_00023 0.80 -0.7
24,658 + MPMX20_00023 0.89 +0.6
24,668 + -1.3
24,671 - +0.2
24,673 + -0.5
24,692 - -0.9
24,710 + +0.3
24,710 + +1.3
24,710 + -0.6
24,718 - +0.3
24,887 - +0.5
25,008 - MPMX20_00024 0.14 +0.5
25,020 - MPMX20_00024 0.15 +1.0
25,020 - MPMX20_00024 0.15 -0.7
25,087 - MPMX20_00024 0.20 -1.1
25,091 + MPMX20_00024 0.21 +1.1
25,118 + MPMX20_00024 0.23 +0.8
25,134 + MPMX20_00024 0.24 -0.5
25,134 + MPMX20_00024 0.24 +0.6
25,164 + MPMX20_00024 0.26 +0.9
25,164 - MPMX20_00024 0.26 +0.5
25,165 - MPMX20_00024 0.26 +0.3
25,251 - MPMX20_00024 0.33 +0.9
25,273 - MPMX20_00024 0.34 -0.4
25,273 - MPMX20_00024 0.34 +0.1
25,306 + MPMX20_00024 0.37 -1.5
25,308 - MPMX20_00024 0.37 -1.7
25,309 + MPMX20_00024 0.37 -2.0
25,309 + MPMX20_00024 0.37 +0.5
25,336 + MPMX20_00024 0.39 -1.3
25,337 - MPMX20_00024 0.39 -0.0
25,418 - MPMX20_00024 0.45 +1.6
25,457 - MPMX20_00024 0.48 +0.3
25,527 + MPMX20_00024 0.53 -0.7
25,527 + MPMX20_00024 0.53 -0.5
25,628 - MPMX20_00024 0.61 +1.1
25,650 + MPMX20_00024 0.62 +1.4
25,686 - MPMX20_00024 0.65 +0.3
25,686 - MPMX20_00024 0.65 -0.0
25,688 + MPMX20_00024 0.65 -0.3
25,696 - MPMX20_00024 0.66 +0.1
25,707 + MPMX20_00024 0.67 -0.5
25,707 + MPMX20_00024 0.67 -0.1
25,715 - MPMX20_00024 0.67 -0.4
25,715 - MPMX20_00024 0.67 -1.1
25,748 - MPMX20_00024 0.70 -0.7
25,807 + MPMX20_00024 0.74 +0.6
25,823 - MPMX20_00024 0.75 +0.4
25,858 + MPMX20_00024 0.78 -0.2
25,881 + MPMX20_00024 0.80 +1.1
25,910 - MPMX20_00024 0.82 -0.2
25,935 - MPMX20_00024 0.84 -3.1
25,946 - MPMX20_00024 0.85 +0.5
25,993 + MPMX20_00024 0.88 +0.5
26,058 + +0.8
26,130 - +1.2
26,133 + +0.4
26,133 + +0.3
26,133 + -0.1
26,133 + -0.0
26,133 + +0.8
26,141 - -0.6
26,141 - -0.3
26,141 - +0.0
26,141 - +0.5
26,141 - +0.8
26,148 + -0.9
26,164 + +0.6
26,254 + +1.0
26,323 + +0.9
26,331 - +0.0
26,333 + +0.6
26,429 - -1.1
26,476 - MPMX20_00025 0.13 -1.8
26,481 + MPMX20_00025 0.13 +0.0
26,484 - MPMX20_00025 0.14 -0.4
26,510 - MPMX20_00025 0.17 -0.2
26,530 - MPMX20_00025 0.19 -0.0
26,532 - MPMX20_00025 0.19 +1.7
26,554 + MPMX20_00025 0.21 +0.9
26,554 + MPMX20_00025 0.21 -0.6
26,575 + MPMX20_00025 0.24 -0.2
26,578 + MPMX20_00025 0.24 +0.8
26,586 - MPMX20_00025 0.25 -0.8
26,675 + MPMX20_00025 0.34 +1.6
26,701 + MPMX20_00025 0.37 +0.2
26,701 + MPMX20_00025 0.37 -0.2
26,701 + MPMX20_00025 0.37 +0.5
26,701 + MPMX20_00025 0.37 +0.7
26,701 + MPMX20_00025 0.37 +1.6
26,709 - MPMX20_00025 0.38 -0.1
26,709 - MPMX20_00025 0.38 -1.2
26,745 - MPMX20_00025 0.42 +0.5
26,770 - MPMX20_00025 0.45 -0.3
26,790 - MPMX20_00025 0.47 -1.0
26,909 + MPMX20_00025 0.60 -0.3
26,947 + MPMX20_00025 0.64 +0.4
26,971 + MPMX20_00025 0.66 +0.4
26,974 - MPMX20_00025 0.67 +0.1

Or see this region's nucleotide sequence