Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02713

Experiment: L-Phenylalanine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_02711 and MPMX20_02712 are separated by 169 nucleotidesMPMX20_02712 and MPMX20_02713 are separated by 37 nucleotidesMPMX20_02713 and MPMX20_02714 are separated by 66 nucleotides MPMX20_02711: MPMX20_02711 - Long-chain-fatty-acid--CoA ligase, at 2,864,121 to 2,865,839 _02711 MPMX20_02712: MPMX20_02712 - Outer membrane protein Slp, at 2,866,009 to 2,866,590 _02712 MPMX20_02713: MPMX20_02713 - tRNA threonylcarbamoyladenosine biosynthesis protein TsaB, at 2,866,628 to 2,867,323 _02713 MPMX20_02714: MPMX20_02714 - putative ATP-dependent DNA helicase YoaA, at 2,867,390 to 2,869,300 _02714 Position (kb) 2866 2867 2868Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2865.639 kb on + strand, within MPMX20_02711at 2865.686 kb on - strandat 2865.692 kb on + strandat 2865.700 kb on - strandat 2865.705 kb on - strandat 2865.705 kb on - strandat 2865.746 kb on + strandat 2865.751 kb on + strandat 2865.751 kb on + strandat 2865.751 kb on + strandat 2865.751 kb on + strandat 2865.784 kb on + strandat 2865.786 kb on - strandat 2865.790 kb on + strandat 2865.790 kb on + strandat 2865.798 kb on - strandat 2865.814 kb on + strandat 2865.822 kb on - strandat 2865.822 kb on - strandat 2865.908 kb on + strandat 2866.040 kb on + strandat 2866.040 kb on + strandat 2866.040 kb on + strandat 2866.040 kb on + strandat 2866.040 kb on + strandat 2866.040 kb on + strandat 2866.043 kb on - strandat 2866.048 kb on - strandat 2866.094 kb on - strand, within MPMX20_02712at 2866.107 kb on - strand, within MPMX20_02712at 2866.223 kb on - strand, within MPMX20_02712at 2866.246 kb on + strand, within MPMX20_02712at 2866.254 kb on - strand, within MPMX20_02712at 2866.348 kb on - strand, within MPMX20_02712at 2866.390 kb on + strand, within MPMX20_02712at 2866.443 kb on + strand, within MPMX20_02712at 2866.451 kb on - strand, within MPMX20_02712at 2866.482 kb on + strand, within MPMX20_02712at 2866.533 kb on + strandat 2866.541 kb on - strandat 2866.541 kb on - strandat 2866.543 kb on - strandat 2866.564 kb on - strandat 2866.571 kb on + strandat 2866.571 kb on + strandat 2866.571 kb on + strandat 2866.579 kb on - strandat 2866.623 kb on - strandat 2867.489 kb on - strandat 2867.511 kb on + strandat 2867.546 kb on + strandat 2867.563 kb on - strandat 2867.563 kb on - strandat 2867.573 kb on + strandat 2867.574 kb on - strandat 2867.717 kb on - strand, within MPMX20_02714at 2867.730 kb on - strand, within MPMX20_02714at 2867.844 kb on + strand, within MPMX20_02714at 2867.886 kb on + strand, within MPMX20_02714at 2867.893 kb on + strand, within MPMX20_02714at 2867.894 kb on - strand, within MPMX20_02714at 2867.901 kb on - strand, within MPMX20_02714at 2867.901 kb on - strand, within MPMX20_02714at 2867.901 kb on - strand, within MPMX20_02714at 2868.045 kb on + strand, within MPMX20_02714at 2868.080 kb on + strand, within MPMX20_02714at 2868.183 kb on + strand, within MPMX20_02714at 2868.220 kb on + strand, within MPMX20_02714at 2868.235 kb on - strand, within MPMX20_02714

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
remove
2,865,639 + MPMX20_02711 0.88 +0.6
2,865,686 - +0.2
2,865,692 + -2.1
2,865,700 - -1.8
2,865,705 - -0.6
2,865,705 - -0.3
2,865,746 + +1.0
2,865,751 + -1.9
2,865,751 + -0.5
2,865,751 + -0.9
2,865,751 + -2.5
2,865,784 + -1.6
2,865,786 - -1.3
2,865,790 + -0.2
2,865,790 + -0.3
2,865,798 - -0.1
2,865,814 + -0.8
2,865,822 - +0.3
2,865,822 - -0.5
2,865,908 + -0.7
2,866,040 + -1.9
2,866,040 + +0.1
2,866,040 + -0.4
2,866,040 + +0.4
2,866,040 + -0.3
2,866,040 + +0.4
2,866,043 - -0.3
2,866,048 - -1.3
2,866,094 - MPMX20_02712 0.15 +1.3
2,866,107 - MPMX20_02712 0.17 +0.7
2,866,223 - MPMX20_02712 0.37 +1.4
2,866,246 + MPMX20_02712 0.41 +0.7
2,866,254 - MPMX20_02712 0.42 +2.6
2,866,348 - MPMX20_02712 0.58 -2.7
2,866,390 + MPMX20_02712 0.65 -1.3
2,866,443 + MPMX20_02712 0.75 +1.0
2,866,451 - MPMX20_02712 0.76 +0.1
2,866,482 + MPMX20_02712 0.81 +1.3
2,866,533 + +0.5
2,866,541 - -0.3
2,866,541 - +0.1
2,866,543 - -1.0
2,866,564 - +0.6
2,866,571 + -0.6
2,866,571 + -0.8
2,866,571 + +0.1
2,866,579 - +0.6
2,866,623 - -1.5
2,867,489 - -2.1
2,867,511 + +1.3
2,867,546 + +1.9
2,867,563 - +0.8
2,867,563 - +0.2
2,867,573 + -0.1
2,867,574 - +2.4
2,867,717 - MPMX20_02714 0.17 +0.5
2,867,730 - MPMX20_02714 0.18 -0.6
2,867,844 + MPMX20_02714 0.24 -2.8
2,867,886 + MPMX20_02714 0.26 -0.3
2,867,893 + MPMX20_02714 0.26 +0.9
2,867,894 - MPMX20_02714 0.26 -0.3
2,867,901 - MPMX20_02714 0.27 +0.4
2,867,901 - MPMX20_02714 0.27 +0.8
2,867,901 - MPMX20_02714 0.27 -1.0
2,868,045 + MPMX20_02714 0.34 +0.2
2,868,080 + MPMX20_02714 0.36 +0.9
2,868,183 + MPMX20_02714 0.41 +0.5
2,868,220 + MPMX20_02714 0.43 -0.1
2,868,235 - MPMX20_02714 0.44 -0.5

Or see this region's nucleotide sequence