Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02149

Experiment: L-Phenylalanine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_02147 and MPMX20_02148 are separated by 2 nucleotidesMPMX20_02148 and MPMX20_02149 are separated by 1 nucleotidesMPMX20_02149 and MPMX20_02150 overlap by 11 nucleotidesMPMX20_02150 and MPMX20_02151 overlap by 1 nucleotides MPMX20_02147: MPMX20_02147 - 2,3-dehydroadipyl-CoA hydratase, at 2,239,453 to 2,240,220 _02147 MPMX20_02148: MPMX20_02148 - 1,2-epoxyphenylacetyl-CoA isomerase, at 2,240,223 to 2,241,008 _02148 MPMX20_02149: MPMX20_02149 - 3-hydroxyadipyl-CoA dehydrogenase, at 2,241,010 to 2,242,437 _02149 MPMX20_02150: MPMX20_02150 - Acyl-coenzyme A thioesterase PaaI, at 2,242,427 to 2,242,849 _02150 MPMX20_02151: MPMX20_02151 - 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase, at 2,242,849 to 2,244,054 _02151 Position (kb) 2241 2242 2243Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2240.037 kb on - strand, within MPMX20_02147at 2240.048 kb on - strand, within MPMX20_02147at 2240.116 kb on + strand, within MPMX20_02147at 2240.116 kb on + strand, within MPMX20_02147at 2240.116 kb on + strand, within MPMX20_02147at 2240.124 kb on - strand, within MPMX20_02147at 2240.130 kb on + strand, within MPMX20_02147at 2240.142 kb on + strand, within MPMX20_02147at 2240.160 kb on - strandat 2240.271 kb on - strandat 2240.276 kb on - strandat 2240.359 kb on - strand, within MPMX20_02148at 2240.563 kb on - strand, within MPMX20_02148at 2240.568 kb on - strand, within MPMX20_02148at 2240.596 kb on - strand, within MPMX20_02148at 2240.622 kb on + strand, within MPMX20_02148at 2240.664 kb on - strand, within MPMX20_02148at 2240.706 kb on - strand, within MPMX20_02148at 2240.711 kb on - strand, within MPMX20_02148at 2240.741 kb on + strand, within MPMX20_02148at 2240.761 kb on + strand, within MPMX20_02148at 2240.768 kb on + strand, within MPMX20_02148at 2240.812 kb on - strand, within MPMX20_02148at 2240.836 kb on + strand, within MPMX20_02148at 2240.839 kb on - strand, within MPMX20_02148at 2240.844 kb on - strand, within MPMX20_02148at 2240.844 kb on - strand, within MPMX20_02148at 2240.844 kb on - strand, within MPMX20_02148at 2240.887 kb on - strand, within MPMX20_02148at 2240.960 kb on + strandat 2240.976 kb on + strandat 2241.351 kb on - strand, within MPMX20_02149at 2241.351 kb on - strand, within MPMX20_02149at 2241.565 kb on + strand, within MPMX20_02149at 2241.566 kb on + strand, within MPMX20_02149at 2241.574 kb on - strand, within MPMX20_02149at 2241.605 kb on + strand, within MPMX20_02149at 2241.631 kb on - strand, within MPMX20_02149at 2241.706 kb on - strand, within MPMX20_02149at 2241.754 kb on - strand, within MPMX20_02149at 2241.869 kb on + strand, within MPMX20_02149at 2241.919 kb on - strand, within MPMX20_02149at 2242.087 kb on - strand, within MPMX20_02149at 2242.257 kb on - strand, within MPMX20_02149at 2242.307 kb on - strandat 2242.367 kb on - strandat 2242.383 kb on + strandat 2242.388 kb on + strandat 2242.419 kb on + strandat 2242.419 kb on - strandat 2242.419 kb on - strandat 2242.453 kb on - strandat 2242.634 kb on + strand, within MPMX20_02150at 2242.635 kb on + strand, within MPMX20_02150at 2242.655 kb on + strand, within MPMX20_02150at 2242.723 kb on + strand, within MPMX20_02150at 2242.731 kb on - strand, within MPMX20_02150at 2242.759 kb on - strand, within MPMX20_02150at 2242.838 kb on + strandat 2242.914 kb on - strandat 2242.937 kb on + strandat 2242.950 kb on - strandat 2243.087 kb on - strand, within MPMX20_02151at 2243.097 kb on - strand, within MPMX20_02151at 2243.120 kb on + strand, within MPMX20_02151at 2243.128 kb on - strand, within MPMX20_02151at 2243.154 kb on + strand, within MPMX20_02151at 2243.229 kb on + strand, within MPMX20_02151at 2243.237 kb on - strand, within MPMX20_02151at 2243.286 kb on - strand, within MPMX20_02151at 2243.423 kb on + strand, within MPMX20_02151

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
remove
2,240,037 - MPMX20_02147 0.76 -0.2
2,240,048 - MPMX20_02147 0.77 -1.2
2,240,116 + MPMX20_02147 0.86 -4.4
2,240,116 + MPMX20_02147 0.86 -3.6
2,240,116 + MPMX20_02147 0.86 -1.9
2,240,124 - MPMX20_02147 0.87 -1.8
2,240,130 + MPMX20_02147 0.88 -3.4
2,240,142 + MPMX20_02147 0.90 -4.6
2,240,160 - -1.1
2,240,271 - -0.8
2,240,276 - -1.9
2,240,359 - MPMX20_02148 0.17 -0.7
2,240,563 - MPMX20_02148 0.43 -1.5
2,240,568 - MPMX20_02148 0.44 -1.4
2,240,596 - MPMX20_02148 0.47 -0.9
2,240,622 + MPMX20_02148 0.51 -1.1
2,240,664 - MPMX20_02148 0.56 +1.3
2,240,706 - MPMX20_02148 0.61 -0.7
2,240,711 - MPMX20_02148 0.62 +0.2
2,240,741 + MPMX20_02148 0.66 -2.8
2,240,761 + MPMX20_02148 0.68 +0.2
2,240,768 + MPMX20_02148 0.69 -3.6
2,240,812 - MPMX20_02148 0.75 -1.9
2,240,836 + MPMX20_02148 0.78 -4.1
2,240,839 - MPMX20_02148 0.78 -3.4
2,240,844 - MPMX20_02148 0.79 -0.5
2,240,844 - MPMX20_02148 0.79 -3.4
2,240,844 - MPMX20_02148 0.79 -1.3
2,240,887 - MPMX20_02148 0.84 -0.6
2,240,960 + -1.3
2,240,976 + -1.2
2,241,351 - MPMX20_02149 0.24 -0.6
2,241,351 - MPMX20_02149 0.24 -2.2
2,241,565 + MPMX20_02149 0.39 -3.6
2,241,566 + MPMX20_02149 0.39 -2.0
2,241,574 - MPMX20_02149 0.39 -1.5
2,241,605 + MPMX20_02149 0.42 -2.9
2,241,631 - MPMX20_02149 0.43 +0.5
2,241,706 - MPMX20_02149 0.49 -1.4
2,241,754 - MPMX20_02149 0.52 -3.3
2,241,869 + MPMX20_02149 0.60 -3.0
2,241,919 - MPMX20_02149 0.64 -2.2
2,242,087 - MPMX20_02149 0.75 +0.3
2,242,257 - MPMX20_02149 0.87 -2.0
2,242,307 - +0.0
2,242,367 - -1.2
2,242,383 + -1.0
2,242,388 + -0.4
2,242,419 + -1.2
2,242,419 - -0.9
2,242,419 - -1.6
2,242,453 - +1.8
2,242,634 + MPMX20_02150 0.49 -0.2
2,242,635 + MPMX20_02150 0.49 +0.3
2,242,655 + MPMX20_02150 0.54 -0.6
2,242,723 + MPMX20_02150 0.70 +1.2
2,242,731 - MPMX20_02150 0.72 -1.3
2,242,759 - MPMX20_02150 0.78 -0.4
2,242,838 + +2.9
2,242,914 - -2.5
2,242,937 + -0.3
2,242,950 - -0.4
2,243,087 - MPMX20_02151 0.20 -0.6
2,243,097 - MPMX20_02151 0.21 -0.7
2,243,120 + MPMX20_02151 0.22 -2.4
2,243,128 - MPMX20_02151 0.23 -1.6
2,243,154 + MPMX20_02151 0.25 -1.6
2,243,229 + MPMX20_02151 0.32 -3.6
2,243,237 - MPMX20_02151 0.32 -0.9
2,243,286 - MPMX20_02151 0.36 -2.2
2,243,423 + MPMX20_02151 0.48 -1.1

Or see this region's nucleotide sequence