Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02146 and MPMX20_02147 overlap by 4 nucleotides MPMX20_02147 and MPMX20_02148 are separated by 2 nucleotides MPMX20_02148 and MPMX20_02149 are separated by 1 nucleotides
MPMX20_02146: MPMX20_02146 - 1,2-phenylacetyl-CoA epoxidase, subunit E, at 2,238,386 to 2,239,456
_02146
MPMX20_02147: MPMX20_02147 - 2,3-dehydroadipyl-CoA hydratase, at 2,239,453 to 2,240,220
_02147
MPMX20_02148: MPMX20_02148 - 1,2-epoxyphenylacetyl-CoA isomerase, at 2,240,223 to 2,241,008
_02148
MPMX20_02149: MPMX20_02149 - 3-hydroxyadipyl-CoA dehydrogenase, at 2,241,010 to 2,242,437
_02149
Position (kb)
2240
2241
2242 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2239.278 kb on - strand, within MPMX20_02146 at 2239.278 kb on - strand, within MPMX20_02146 at 2239.298 kb on - strand, within MPMX20_02146 at 2239.353 kb on + strand at 2239.353 kb on + strand at 2239.361 kb on - strand at 2239.361 kb on - strand at 2239.380 kb on + strand at 2239.400 kb on - strand at 2239.413 kb on + strand at 2239.473 kb on - strand at 2239.536 kb on + strand, within MPMX20_02147 at 2239.611 kb on + strand, within MPMX20_02147 at 2239.633 kb on - strand, within MPMX20_02147 at 2239.650 kb on - strand, within MPMX20_02147 at 2239.788 kb on + strand, within MPMX20_02147 at 2239.788 kb on + strand, within MPMX20_02147 at 2239.935 kb on + strand, within MPMX20_02147 at 2239.937 kb on + strand, within MPMX20_02147 at 2239.969 kb on - strand, within MPMX20_02147 at 2239.979 kb on - strand, within MPMX20_02147 at 2239.983 kb on + strand, within MPMX20_02147 at 2240.037 kb on - strand, within MPMX20_02147 at 2240.048 kb on - strand, within MPMX20_02147 at 2240.116 kb on + strand, within MPMX20_02147 at 2240.116 kb on + strand, within MPMX20_02147 at 2240.116 kb on + strand, within MPMX20_02147 at 2240.124 kb on - strand, within MPMX20_02147 at 2240.130 kb on + strand, within MPMX20_02147 at 2240.142 kb on + strand, within MPMX20_02147 at 2240.160 kb on - strand at 2240.271 kb on - strand at 2240.276 kb on - strand at 2240.359 kb on - strand, within MPMX20_02148 at 2240.563 kb on - strand, within MPMX20_02148 at 2240.568 kb on - strand, within MPMX20_02148 at 2240.596 kb on - strand, within MPMX20_02148 at 2240.622 kb on + strand, within MPMX20_02148 at 2240.664 kb on - strand, within MPMX20_02148 at 2240.706 kb on - strand, within MPMX20_02148 at 2240.711 kb on - strand, within MPMX20_02148 at 2240.741 kb on + strand, within MPMX20_02148 at 2240.761 kb on + strand, within MPMX20_02148 at 2240.768 kb on + strand, within MPMX20_02148 at 2240.812 kb on - strand, within MPMX20_02148 at 2240.836 kb on + strand, within MPMX20_02148 at 2240.839 kb on - strand, within MPMX20_02148 at 2240.844 kb on - strand, within MPMX20_02148 at 2240.844 kb on - strand, within MPMX20_02148 at 2240.844 kb on - strand, within MPMX20_02148 at 2240.887 kb on - strand, within MPMX20_02148 at 2240.960 kb on + strand at 2240.976 kb on + strand at 2241.351 kb on - strand, within MPMX20_02149 at 2241.351 kb on - strand, within MPMX20_02149 at 2241.565 kb on + strand, within MPMX20_02149 at 2241.566 kb on + strand, within MPMX20_02149 at 2241.574 kb on - strand, within MPMX20_02149 at 2241.605 kb on + strand, within MPMX20_02149 at 2241.631 kb on - strand, within MPMX20_02149 at 2241.706 kb on - strand, within MPMX20_02149 at 2241.754 kb on - strand, within MPMX20_02149 at 2241.869 kb on + strand, within MPMX20_02149 at 2241.919 kb on - strand, within MPMX20_02149
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 2,239,278 - MPMX20_02146 0.83 -1.9 2,239,278 - MPMX20_02146 0.83 -1.4 2,239,298 - MPMX20_02146 0.85 -1.1 2,239,353 + -2.6 2,239,353 + -2.5 2,239,361 - +0.4 2,239,361 - -1.4 2,239,380 + -3.2 2,239,400 - -2.1 2,239,413 + -2.6 2,239,473 - -1.4 2,239,536 + MPMX20_02147 0.11 -3.2 2,239,611 + MPMX20_02147 0.21 +0.2 2,239,633 - MPMX20_02147 0.23 -1.6 2,239,650 - MPMX20_02147 0.26 +0.2 2,239,788 + MPMX20_02147 0.44 -1.4 2,239,788 + MPMX20_02147 0.44 -2.8 2,239,935 + MPMX20_02147 0.63 -1.0 2,239,937 + MPMX20_02147 0.63 -1.6 2,239,969 - MPMX20_02147 0.67 -0.7 2,239,979 - MPMX20_02147 0.68 -1.4 2,239,983 + MPMX20_02147 0.69 +1.9 2,240,037 - MPMX20_02147 0.76 -0.2 2,240,048 - MPMX20_02147 0.77 -1.2 2,240,116 + MPMX20_02147 0.86 -4.4 2,240,116 + MPMX20_02147 0.86 -3.6 2,240,116 + MPMX20_02147 0.86 -1.9 2,240,124 - MPMX20_02147 0.87 -1.8 2,240,130 + MPMX20_02147 0.88 -3.4 2,240,142 + MPMX20_02147 0.90 -4.6 2,240,160 - -1.1 2,240,271 - -0.8 2,240,276 - -1.9 2,240,359 - MPMX20_02148 0.17 -0.7 2,240,563 - MPMX20_02148 0.43 -1.5 2,240,568 - MPMX20_02148 0.44 -1.4 2,240,596 - MPMX20_02148 0.47 -0.9 2,240,622 + MPMX20_02148 0.51 -1.1 2,240,664 - MPMX20_02148 0.56 +1.3 2,240,706 - MPMX20_02148 0.61 -0.7 2,240,711 - MPMX20_02148 0.62 +0.2 2,240,741 + MPMX20_02148 0.66 -2.8 2,240,761 + MPMX20_02148 0.68 +0.2 2,240,768 + MPMX20_02148 0.69 -3.6 2,240,812 - MPMX20_02148 0.75 -1.9 2,240,836 + MPMX20_02148 0.78 -4.1 2,240,839 - MPMX20_02148 0.78 -3.4 2,240,844 - MPMX20_02148 0.79 -0.5 2,240,844 - MPMX20_02148 0.79 -3.4 2,240,844 - MPMX20_02148 0.79 -1.3 2,240,887 - MPMX20_02148 0.84 -0.6 2,240,960 + -1.3 2,240,976 + -1.2 2,241,351 - MPMX20_02149 0.24 -0.6 2,241,351 - MPMX20_02149 0.24 -2.2 2,241,565 + MPMX20_02149 0.39 -3.6 2,241,566 + MPMX20_02149 0.39 -2.0 2,241,574 - MPMX20_02149 0.39 -1.5 2,241,605 + MPMX20_02149 0.42 -2.9 2,241,631 - MPMX20_02149 0.43 +0.5 2,241,706 - MPMX20_02149 0.49 -1.4 2,241,754 - MPMX20_02149 0.52 -3.3 2,241,869 + MPMX20_02149 0.60 -3.0 2,241,919 - MPMX20_02149 0.64 -2.2
Or see this region's nucleotide sequence