Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01044

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01043 and MPMX20_01044 are separated by 75 nucleotidesMPMX20_01044 and MPMX20_01045 are separated by 203 nucleotidesMPMX20_01045 and MPMX20_01046 are separated by 30 nucleotides MPMX20_01043: MPMX20_01043 - Ammonia channel, at 1,099,271 to 1,100,557 _01043 MPMX20_01044: MPMX20_01044 - Acyl-CoA thioesterase 2, at 1,100,633 to 1,101,493 _01044 MPMX20_01045: MPMX20_01045 - putative lipoprotein YbaY, at 1,101,697 to 1,102,224 _01045 MPMX20_01046: MPMX20_01046 - DNA base-flipping protein, at 1,102,255 to 1,102,566 _01046 Position (kb) 1100 1101 1102Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1099.723 kb on - strand, within MPMX20_01043at 1099.725 kb on + strand, within MPMX20_01043at 1099.743 kb on - strand, within MPMX20_01043at 1099.743 kb on - strand, within MPMX20_01043at 1099.743 kb on - strand, within MPMX20_01043at 1099.760 kb on - strand, within MPMX20_01043at 1099.774 kb on + strand, within MPMX20_01043at 1099.816 kb on - strand, within MPMX20_01043at 1099.835 kb on + strand, within MPMX20_01043at 1099.838 kb on - strand, within MPMX20_01043at 1099.848 kb on - strand, within MPMX20_01043at 1099.869 kb on + strand, within MPMX20_01043at 1099.877 kb on - strand, within MPMX20_01043at 1099.877 kb on - strand, within MPMX20_01043at 1099.903 kb on - strand, within MPMX20_01043at 1099.927 kb on - strand, within MPMX20_01043at 1099.937 kb on + strand, within MPMX20_01043at 1099.962 kb on + strand, within MPMX20_01043at 1100.018 kb on + strand, within MPMX20_01043at 1100.023 kb on + strand, within MPMX20_01043at 1100.026 kb on - strand, within MPMX20_01043at 1100.044 kb on + strand, within MPMX20_01043at 1100.047 kb on - strand, within MPMX20_01043at 1100.054 kb on + strand, within MPMX20_01043at 1100.075 kb on - strand, within MPMX20_01043at 1100.095 kb on + strand, within MPMX20_01043at 1100.095 kb on + strand, within MPMX20_01043at 1100.101 kb on + strand, within MPMX20_01043at 1100.103 kb on - strand, within MPMX20_01043at 1100.121 kb on + strand, within MPMX20_01043at 1100.151 kb on - strand, within MPMX20_01043at 1100.154 kb on + strand, within MPMX20_01043at 1100.252 kb on - strand, within MPMX20_01043at 1100.252 kb on - strand, within MPMX20_01043at 1100.259 kb on + strand, within MPMX20_01043at 1100.351 kb on + strand, within MPMX20_01043at 1100.409 kb on - strand, within MPMX20_01043at 1100.454 kb on + strandat 1100.521 kb on - strandat 1100.521 kb on - strandat 1100.580 kb on - strandat 1100.580 kb on - strandat 1100.615 kb on - strandat 1100.625 kb on + strandat 1100.633 kb on - strandat 1100.633 kb on - strandat 1100.655 kb on - strandat 1100.657 kb on + strandat 1100.694 kb on + strandat 1100.694 kb on + strandat 1100.694 kb on + strandat 1100.702 kb on - strandat 1100.744 kb on - strand, within MPMX20_01044at 1100.759 kb on - strand, within MPMX20_01044at 1100.759 kb on - strand, within MPMX20_01044at 1100.759 kb on - strand, within MPMX20_01044at 1100.775 kb on - strand, within MPMX20_01044at 1100.784 kb on + strand, within MPMX20_01044at 1100.847 kb on + strand, within MPMX20_01044at 1100.999 kb on + strand, within MPMX20_01044at 1101.046 kb on + strand, within MPMX20_01044at 1101.053 kb on - strand, within MPMX20_01044at 1101.119 kb on - strand, within MPMX20_01044at 1101.202 kb on - strand, within MPMX20_01044at 1101.214 kb on + strand, within MPMX20_01044at 1101.229 kb on + strand, within MPMX20_01044at 1101.237 kb on - strand, within MPMX20_01044at 1101.262 kb on + strand, within MPMX20_01044at 1101.347 kb on + strand, within MPMX20_01044at 1101.357 kb on - strand, within MPMX20_01044at 1101.405 kb on - strand, within MPMX20_01044at 1101.423 kb on + strandat 1101.481 kb on + strandat 1101.481 kb on + strandat 1101.481 kb on + strandat 1101.481 kb on + strandat 1101.501 kb on - strandat 1101.529 kb on - strandat 1101.531 kb on + strandat 1101.533 kb on + strandat 1101.611 kb on - strandat 1101.722 kb on - strandat 1101.750 kb on - strand, within MPMX20_01045at 1101.752 kb on + strand, within MPMX20_01045at 1101.760 kb on - strand, within MPMX20_01045at 1101.809 kb on - strand, within MPMX20_01045at 1101.832 kb on - strand, within MPMX20_01045at 1101.842 kb on - strand, within MPMX20_01045at 1101.861 kb on - strand, within MPMX20_01045at 1101.899 kb on + strand, within MPMX20_01045at 1101.907 kb on - strand, within MPMX20_01045at 1101.907 kb on - strand, within MPMX20_01045at 1101.952 kb on - strand, within MPMX20_01045at 1101.961 kb on - strand, within MPMX20_01045at 1101.985 kb on + strand, within MPMX20_01045at 1101.993 kb on - strand, within MPMX20_01045at 1101.993 kb on - strand, within MPMX20_01045at 1101.993 kb on - strand, within MPMX20_01045at 1102.005 kb on + strand, within MPMX20_01045at 1102.034 kb on - strand, within MPMX20_01045at 1102.041 kb on - strand, within MPMX20_01045at 1102.042 kb on - strand, within MPMX20_01045at 1102.208 kb on + strandat 1102.218 kb on + strandat 1102.221 kb on - strandat 1102.227 kb on - strandat 1102.233 kb on + strandat 1102.235 kb on - strandat 1102.235 kb on - strandat 1102.251 kb on + strandat 1102.261 kb on - strandat 1102.261 kb on - strandat 1102.261 kb on - strandat 1102.303 kb on + strand, within MPMX20_01046at 1102.319 kb on - strand, within MPMX20_01046at 1102.321 kb on - strand, within MPMX20_01046at 1102.355 kb on - strand, within MPMX20_01046at 1102.394 kb on + strand, within MPMX20_01046at 1102.397 kb on - strand, within MPMX20_01046at 1102.423 kb on + strand, within MPMX20_01046at 1102.444 kb on - strand, within MPMX20_01046

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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1,099,723 - MPMX20_01043 0.35 +1.4
1,099,725 + MPMX20_01043 0.35 +1.8
1,099,743 - MPMX20_01043 0.37 -0.8
1,099,743 - MPMX20_01043 0.37 +0.6
1,099,743 - MPMX20_01043 0.37 -0.5
1,099,760 - MPMX20_01043 0.38 +1.5
1,099,774 + MPMX20_01043 0.39 -1.9
1,099,816 - MPMX20_01043 0.42 +0.2
1,099,835 + MPMX20_01043 0.44 +0.1
1,099,838 - MPMX20_01043 0.44 -0.3
1,099,848 - MPMX20_01043 0.45 -1.3
1,099,869 + MPMX20_01043 0.46 -0.1
1,099,877 - MPMX20_01043 0.47 +0.6
1,099,877 - MPMX20_01043 0.47 -0.4
1,099,903 - MPMX20_01043 0.49 +0.5
1,099,927 - MPMX20_01043 0.51 -1.3
1,099,937 + MPMX20_01043 0.52 +2.4
1,099,962 + MPMX20_01043 0.54 +0.3
1,100,018 + MPMX20_01043 0.58 -0.5
1,100,023 + MPMX20_01043 0.58 -0.6
1,100,026 - MPMX20_01043 0.59 +0.3
1,100,044 + MPMX20_01043 0.60 +0.7
1,100,047 - MPMX20_01043 0.60 -0.7
1,100,054 + MPMX20_01043 0.61 -0.3
1,100,075 - MPMX20_01043 0.62 +0.3
1,100,095 + MPMX20_01043 0.64 -0.0
1,100,095 + MPMX20_01043 0.64 +2.3
1,100,101 + MPMX20_01043 0.64 +1.1
1,100,103 - MPMX20_01043 0.65 +0.9
1,100,121 + MPMX20_01043 0.66 +0.9
1,100,151 - MPMX20_01043 0.68 +1.6
1,100,154 + MPMX20_01043 0.69 -0.1
1,100,252 - MPMX20_01043 0.76 +0.4
1,100,252 - MPMX20_01043 0.76 -0.5
1,100,259 + MPMX20_01043 0.77 +3.3
1,100,351 + MPMX20_01043 0.84 +0.1
1,100,409 - MPMX20_01043 0.88 -0.6
1,100,454 + -0.3
1,100,521 - -1.5
1,100,521 - +1.4
1,100,580 - +0.4
1,100,580 - +1.2
1,100,615 - +1.1
1,100,625 + +0.4
1,100,633 - +1.5
1,100,633 - +2.4
1,100,655 - -0.1
1,100,657 + +2.1
1,100,694 + +1.5
1,100,694 + -2.3
1,100,694 + -0.7
1,100,702 - -1.2
1,100,744 - MPMX20_01044 0.13 -2.3
1,100,759 - MPMX20_01044 0.15 -1.6
1,100,759 - MPMX20_01044 0.15 +0.6
1,100,759 - MPMX20_01044 0.15 +1.2
1,100,775 - MPMX20_01044 0.16 -0.1
1,100,784 + MPMX20_01044 0.18 -0.1
1,100,847 + MPMX20_01044 0.25 -0.4
1,100,999 + MPMX20_01044 0.43 +0.1
1,101,046 + MPMX20_01044 0.48 +0.6
1,101,053 - MPMX20_01044 0.49 -1.1
1,101,119 - MPMX20_01044 0.56 -1.1
1,101,202 - MPMX20_01044 0.66 +3.1
1,101,214 + MPMX20_01044 0.67 -0.7
1,101,229 + MPMX20_01044 0.69 +1.3
1,101,237 - MPMX20_01044 0.70 -0.9
1,101,262 + MPMX20_01044 0.73 -1.4
1,101,347 + MPMX20_01044 0.83 -0.3
1,101,357 - MPMX20_01044 0.84 -0.6
1,101,405 - MPMX20_01044 0.90 -1.4
1,101,423 + +1.3
1,101,481 + +1.9
1,101,481 + -0.9
1,101,481 + -3.4
1,101,481 + -0.7
1,101,501 - -1.5
1,101,529 - -0.4
1,101,531 + -2.1
1,101,533 + -1.7
1,101,611 - -0.2
1,101,722 - +1.9
1,101,750 - MPMX20_01045 0.10 +1.3
1,101,752 + MPMX20_01045 0.10 -1.3
1,101,760 - MPMX20_01045 0.12 -1.8
1,101,809 - MPMX20_01045 0.21 -0.4
1,101,832 - MPMX20_01045 0.26 +0.4
1,101,842 - MPMX20_01045 0.27 +0.6
1,101,861 - MPMX20_01045 0.31 +0.2
1,101,899 + MPMX20_01045 0.38 -0.0
1,101,907 - MPMX20_01045 0.40 +0.7
1,101,907 - MPMX20_01045 0.40 +0.0
1,101,952 - MPMX20_01045 0.48 -1.4
1,101,961 - MPMX20_01045 0.50 -1.1
1,101,985 + MPMX20_01045 0.55 +0.8
1,101,993 - MPMX20_01045 0.56 +0.7
1,101,993 - MPMX20_01045 0.56 -0.2
1,101,993 - MPMX20_01045 0.56 -3.7
1,102,005 + MPMX20_01045 0.58 -0.2
1,102,034 - MPMX20_01045 0.64 -1.2
1,102,041 - MPMX20_01045 0.65 -2.0
1,102,042 - MPMX20_01045 0.65 -0.4
1,102,208 + -2.3
1,102,218 + +0.7
1,102,221 - -0.4
1,102,227 - -1.6
1,102,233 + +0.6
1,102,235 - +0.3
1,102,235 - -1.2
1,102,251 + -0.9
1,102,261 - -1.1
1,102,261 - +0.8
1,102,261 - -0.5
1,102,303 + MPMX20_01046 0.15 +1.8
1,102,319 - MPMX20_01046 0.21 +0.2
1,102,321 - MPMX20_01046 0.21 -1.0
1,102,355 - MPMX20_01046 0.32 -0.8
1,102,394 + MPMX20_01046 0.45 +0.4
1,102,397 - MPMX20_01046 0.46 +0.9
1,102,423 + MPMX20_01046 0.54 +1.1
1,102,444 - MPMX20_01046 0.61 -0.4

Or see this region's nucleotide sequence