Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00873

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00872 and MPMX20_00873 are separated by 28 nucleotidesMPMX20_00873 and MPMX20_00874 overlap by 14 nucleotidesMPMX20_00874 and MPMX20_00875 are separated by 196 nucleotidesMPMX20_00875 and MPMX20_00876 overlap by 4 nucleotides MPMX20_00872: MPMX20_00872 - tRNA(Ile)-lysidine synthase, at 923,897 to 925,183 _00872 MPMX20_00873: MPMX20_00873 - Protein rof, at 925,212 to 925,472 _00873 MPMX20_00874: MPMX20_00874 - hypothetical protein, at 925,459 to 925,659 _00874 MPMX20_00875: MPMX20_00875 - putative protein YaeQ, at 925,856 to 926,401 _00875 MPMX20_00876: MPMX20_00876 - Peptidyl-tRNA hydrolase ArfB, at 926,398 to 926,820 _00876 Position (kb) 925 926Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 925.186 kb on - strandat 925.232 kb on - strandat 925.348 kb on + strand, within MPMX20_00873at 925.391 kb on + strand, within MPMX20_00873at 925.391 kb on + strand, within MPMX20_00873at 925.399 kb on - strand, within MPMX20_00873at 925.535 kb on - strand, within MPMX20_00874at 925.539 kb on + strand, within MPMX20_00874at 925.585 kb on + strand, within MPMX20_00874at 925.585 kb on + strand, within MPMX20_00874at 925.597 kb on + strand, within MPMX20_00874at 925.597 kb on + strand, within MPMX20_00874at 925.597 kb on + strand, within MPMX20_00874at 925.605 kb on - strand, within MPMX20_00874at 925.664 kb on + strandat 925.672 kb on - strandat 925.672 kb on - strandat 925.687 kb on - strandat 925.689 kb on - strandat 925.706 kb on - strandat 925.721 kb on - strandat 925.757 kb on - strandat 925.757 kb on - strandat 925.799 kb on - strandat 925.834 kb on - strandat 925.846 kb on + strandat 925.926 kb on - strand, within MPMX20_00875at 925.926 kb on - strand, within MPMX20_00875at 926.073 kb on + strand, within MPMX20_00875at 926.151 kb on + strand, within MPMX20_00875at 926.223 kb on - strand, within MPMX20_00875at 926.271 kb on + strand, within MPMX20_00875at 926.319 kb on + strand, within MPMX20_00875at 926.331 kb on + strand, within MPMX20_00875at 926.416 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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925,186 - +1.7
925,232 - -0.1
925,348 + MPMX20_00873 0.52 -3.8
925,391 + MPMX20_00873 0.69 -1.3
925,391 + MPMX20_00873 0.69 -1.1
925,399 - MPMX20_00873 0.72 -0.6
925,535 - MPMX20_00874 0.38 +0.3
925,539 + MPMX20_00874 0.40 -0.4
925,585 + MPMX20_00874 0.63 +0.3
925,585 + MPMX20_00874 0.63 +0.7
925,597 + MPMX20_00874 0.69 +0.2
925,597 + MPMX20_00874 0.69 +0.9
925,597 + MPMX20_00874 0.69 +0.2
925,605 - MPMX20_00874 0.73 +0.5
925,664 + -1.2
925,672 - +0.5
925,672 - +0.9
925,687 - -0.9
925,689 - -1.9
925,706 - +1.1
925,721 - -1.6
925,757 - -3.1
925,757 - +1.5
925,799 - -0.7
925,834 - -0.2
925,846 + -0.8
925,926 - MPMX20_00875 0.13 -1.9
925,926 - MPMX20_00875 0.13 -0.4
926,073 + MPMX20_00875 0.40 -1.3
926,151 + MPMX20_00875 0.54 +0.8
926,223 - MPMX20_00875 0.67 +0.6
926,271 + MPMX20_00875 0.76 -0.6
926,319 + MPMX20_00875 0.85 +0.5
926,331 + MPMX20_00875 0.87 -1.8
926,416 + +0.2

Or see this region's nucleotide sequence