Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00087

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00086 and MPMX20_00087 are separated by 19 nucleotidesMPMX20_00087 and MPMX20_00088 are separated by 54 nucleotidesMPMX20_00088 and MPMX20_00089 are separated by 251 nucleotides MPMX20_00086: MPMX20_00086 - Bifunctional (p)ppGpp synthase/hydrolase SpoT, at 88,736 to 90,850 _00086 MPMX20_00087: MPMX20_00087 - DNA-directed RNA polymerase subunit omega, at 90,870 to 91,145 _00087 MPMX20_00088: MPMX20_00088 - Guanylate kinase, at 91,200 to 91,823 _00088 MPMX20_00089: MPMX20_00089 - DNA ligase B, at 92,075 to 93,745 _00089 Position (kb) 90 91 92Strain fitness (log2 ratio) -3 -2 -1 0 1at 90.887 kb on - strandat 90.887 kb on - strandat 90.977 kb on - strand, within MPMX20_00087at 91.056 kb on + strand, within MPMX20_00087at 91.059 kb on - strand, within MPMX20_00087at 91.064 kb on - strand, within MPMX20_00087at 91.064 kb on - strand, within MPMX20_00087at 91.099 kb on - strand, within MPMX20_00087at 91.099 kb on - strand, within MPMX20_00087at 91.122 kb on + strandat 91.122 kb on + strandat 91.122 kb on + strandat 91.130 kb on - strandat 91.130 kb on - strandat 91.186 kb on + strandat 91.892 kb on + strandat 91.892 kb on + strandat 91.892 kb on + strandat 91.900 kb on - strandat 91.900 kb on - strandat 91.900 kb on - strandat 91.900 kb on - strandat 91.901 kb on - strandat 91.968 kb on - strandat 92.011 kb on - strandat 92.011 kb on - strandat 92.011 kb on - strandat 92.013 kb on - strandat 92.039 kb on + strandat 92.039 kb on + strandat 92.040 kb on + strandat 92.040 kb on + strandat 92.047 kb on - strandat 92.047 kb on - strandat 92.047 kb on - strandat 92.048 kb on - strandat 92.048 kb on - strandat 92.048 kb on - strandat 92.048 kb on - strandat 92.072 kb on + strandat 92.094 kb on + strandat 92.094 kb on + strandat 92.094 kb on + strandat 92.102 kb on - strandat 92.102 kb on - strandat 92.102 kb on - strandat 92.102 kb on - strandat 92.112 kb on - strandat 92.129 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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90,887 - -0.5
90,887 - +0.0
90,977 - MPMX20_00087 0.39 -1.4
91,056 + MPMX20_00087 0.67 -1.8
91,059 - MPMX20_00087 0.68 -0.9
91,064 - MPMX20_00087 0.70 -1.8
91,064 - MPMX20_00087 0.70 -2.7
91,099 - MPMX20_00087 0.83 -0.7
91,099 - MPMX20_00087 0.83 -0.5
91,122 + -3.1
91,122 + +1.5
91,122 + -2.8
91,130 - -2.3
91,130 - -0.5
91,186 + -1.2
91,892 + -1.2
91,892 + -0.6
91,892 + +0.1
91,900 - +1.3
91,900 - +0.3
91,900 - +0.6
91,900 - +0.8
91,901 - -1.3
91,968 - -0.7
92,011 - +0.3
92,011 - +1.3
92,011 - +0.7
92,013 - -1.2
92,039 + +0.7
92,039 + +0.3
92,040 + +0.7
92,040 + +1.2
92,047 - +0.6
92,047 - +1.6
92,047 - -2.3
92,048 - +0.8
92,048 - -2.1
92,048 - -1.7
92,048 - +0.7
92,072 + -0.9
92,094 + +0.6
92,094 + +0.7
92,094 + -1.4
92,102 - +0.7
92,102 - +1.0
92,102 - -0.9
92,102 - -0.2
92,112 - -0.1
92,129 - -0.3

Or see this region's nucleotide sequence