Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02371 and MPMX20_02372 are separated by 43 nucleotides MPMX20_02372 and MPMX20_02373 are separated by 199 nucleotides MPMX20_02373 and MPMX20_02374 are separated by 30 nucleotides
MPMX20_02371: MPMX20_02371 - Alcohol dehydrogenase, propanol-preferring, at 2,499,392 to 2,500,402
_02371
MPMX20_02372: MPMX20_02372 - HTH-type transcriptional repressor NsrR, at 2,500,446 to 2,500,952
_02372
MPMX20_02373: MPMX20_02373 - NADH dehydrogenase-like protein, at 2,501,152 to 2,502,354
_02373
MPMX20_02374: MPMX20_02374 - Putative transporter AraJ, at 2,502,385 to 2,503,563
_02374
Position (kb)
2501
2502
2503 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2500.216 kb on - strand, within MPMX20_02371 at 2500.216 kb on - strand, within MPMX20_02371 at 2500.250 kb on + strand, within MPMX20_02371 at 2500.251 kb on + strand, within MPMX20_02371 at 2500.349 kb on - strand at 2500.369 kb on - strand at 2500.382 kb on - strand at 2500.382 kb on - strand at 2500.579 kb on - strand, within MPMX20_02372 at 2500.581 kb on + strand, within MPMX20_02372 at 2500.589 kb on - strand, within MPMX20_02372 at 2500.612 kb on + strand, within MPMX20_02372 at 2500.746 kb on - strand, within MPMX20_02372 at 2500.785 kb on - strand, within MPMX20_02372 at 2500.897 kb on + strand, within MPMX20_02372 at 2500.908 kb on - strand at 2501.120 kb on + strand at 2501.120 kb on + strand at 2501.451 kb on + strand, within MPMX20_02373 at 2501.462 kb on + strand, within MPMX20_02373 at 2501.470 kb on - strand, within MPMX20_02373 at 2501.470 kb on - strand, within MPMX20_02373 at 2501.549 kb on - strand, within MPMX20_02373 at 2501.566 kb on - strand, within MPMX20_02373 at 2501.566 kb on - strand, within MPMX20_02373 at 2501.600 kb on - strand, within MPMX20_02373 at 2501.605 kb on + strand, within MPMX20_02373 at 2501.615 kb on - strand, within MPMX20_02373 at 2501.615 kb on - strand, within MPMX20_02373 at 2501.754 kb on + strand, within MPMX20_02373 at 2501.761 kb on + strand, within MPMX20_02373 at 2501.766 kb on + strand, within MPMX20_02373 at 2501.774 kb on - strand, within MPMX20_02373 at 2501.774 kb on - strand, within MPMX20_02373 at 2501.774 kb on - strand, within MPMX20_02373 at 2501.774 kb on - strand, within MPMX20_02373 at 2501.812 kb on + strand, within MPMX20_02373 at 2501.812 kb on + strand, within MPMX20_02373 at 2501.820 kb on - strand, within MPMX20_02373 at 2501.820 kb on - strand, within MPMX20_02373 at 2501.820 kb on - strand, within MPMX20_02373 at 2501.820 kb on - strand, within MPMX20_02373 at 2501.820 kb on - strand, within MPMX20_02373 at 2501.857 kb on - strand, within MPMX20_02373 at 2501.857 kb on - strand, within MPMX20_02373 at 2501.857 kb on - strand, within MPMX20_02373 at 2501.895 kb on - strand, within MPMX20_02373 at 2501.906 kb on + strand, within MPMX20_02373 at 2501.963 kb on + strand, within MPMX20_02373 at 2501.988 kb on + strand, within MPMX20_02373 at 2502.030 kb on - strand, within MPMX20_02373 at 2502.041 kb on - strand, within MPMX20_02373 at 2502.064 kb on + strand, within MPMX20_02373 at 2502.071 kb on + strand, within MPMX20_02373 at 2502.141 kb on + strand, within MPMX20_02373 at 2502.141 kb on + strand, within MPMX20_02373 at 2502.167 kb on + strand, within MPMX20_02373 at 2502.167 kb on - strand, within MPMX20_02373 at 2502.167 kb on - strand, within MPMX20_02373 at 2502.174 kb on - strand, within MPMX20_02373 at 2502.176 kb on + strand, within MPMX20_02373 at 2502.176 kb on + strand, within MPMX20_02373 at 2502.176 kb on + strand, within MPMX20_02373 at 2502.176 kb on + strand, within MPMX20_02373 at 2502.176 kb on + strand, within MPMX20_02373 at 2502.176 kb on + strand, within MPMX20_02373 at 2502.180 kb on + strand, within MPMX20_02373 at 2502.184 kb on - strand, within MPMX20_02373 at 2502.184 kb on - strand, within MPMX20_02373 at 2502.184 kb on - strand, within MPMX20_02373 at 2502.184 kb on - strand, within MPMX20_02373 at 2502.184 kb on - strand, within MPMX20_02373 at 2502.215 kb on + strand, within MPMX20_02373 at 2502.223 kb on - strand, within MPMX20_02373 at 2502.227 kb on - strand, within MPMX20_02373 at 2502.291 kb on + strand at 2502.303 kb on + strand at 2502.311 kb on - strand at 2502.433 kb on - strand at 2502.433 kb on - strand at 2502.445 kb on - strand at 2502.475 kb on - strand at 2502.506 kb on - strand, within MPMX20_02374 at 2502.713 kb on - strand, within MPMX20_02374 at 2502.737 kb on + strand, within MPMX20_02374 at 2502.745 kb on - strand, within MPMX20_02374 at 2502.782 kb on - strand, within MPMX20_02374 at 2502.823 kb on + strand, within MPMX20_02374 at 2502.902 kb on + strand, within MPMX20_02374 at 2502.902 kb on + strand, within MPMX20_02374 at 2502.902 kb on + strand, within MPMX20_02374 at 2502.912 kb on - strand, within MPMX20_02374 at 2503.016 kb on + strand, within MPMX20_02374 at 2503.022 kb on - strand, within MPMX20_02374 at 2503.031 kb on + strand, within MPMX20_02374 at 2503.039 kb on - strand, within MPMX20_02374 at 2503.039 kb on - strand, within MPMX20_02374 at 2503.039 kb on - strand, within MPMX20_02374 at 2503.039 kb on - strand, within MPMX20_02374 at 2503.041 kb on + strand, within MPMX20_02374 at 2503.044 kb on - strand, within MPMX20_02374 at 2503.044 kb on - strand, within MPMX20_02374 at 2503.061 kb on + strand, within MPMX20_02374 at 2503.061 kb on + strand, within MPMX20_02374 at 2503.069 kb on - strand, within MPMX20_02374 at 2503.104 kb on + strand, within MPMX20_02374 at 2503.121 kb on + strand, within MPMX20_02374 at 2503.124 kb on - strand, within MPMX20_02374 at 2503.126 kb on - strand, within MPMX20_02374 at 2503.128 kb on + strand, within MPMX20_02374 at 2503.128 kb on + strand, within MPMX20_02374 at 2503.138 kb on + strand, within MPMX20_02374 at 2503.192 kb on - strand, within MPMX20_02374 at 2503.273 kb on + strand, within MPMX20_02374 at 2503.328 kb on + strand, within MPMX20_02374
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 2,500,216 - MPMX20_02371 0.82 +2.1 2,500,216 - MPMX20_02371 0.82 -0.5 2,500,250 + MPMX20_02371 0.85 +0.1 2,500,251 + MPMX20_02371 0.85 +1.7 2,500,349 - -1.4 2,500,369 - -1.7 2,500,382 - -3.0 2,500,382 - -2.3 2,500,579 - MPMX20_02372 0.26 +1.4 2,500,581 + MPMX20_02372 0.27 -2.7 2,500,589 - MPMX20_02372 0.28 -0.9 2,500,612 + MPMX20_02372 0.33 +0.4 2,500,746 - MPMX20_02372 0.59 -0.6 2,500,785 - MPMX20_02372 0.67 +1.8 2,500,897 + MPMX20_02372 0.89 -0.2 2,500,908 - +0.8 2,501,120 + -0.4 2,501,120 + -0.6 2,501,451 + MPMX20_02373 0.25 -1.4 2,501,462 + MPMX20_02373 0.26 -0.6 2,501,470 - MPMX20_02373 0.26 +1.6 2,501,470 - MPMX20_02373 0.26 -1.4 2,501,549 - MPMX20_02373 0.33 +2.0 2,501,566 - MPMX20_02373 0.34 -1.2 2,501,566 - MPMX20_02373 0.34 -1.7 2,501,600 - MPMX20_02373 0.37 -2.2 2,501,605 + MPMX20_02373 0.38 +1.2 2,501,615 - MPMX20_02373 0.38 +1.8 2,501,615 - MPMX20_02373 0.38 -2.4 2,501,754 + MPMX20_02373 0.50 +1.0 2,501,761 + MPMX20_02373 0.51 -3.5 2,501,766 + MPMX20_02373 0.51 +0.6 2,501,774 - MPMX20_02373 0.52 -2.0 2,501,774 - MPMX20_02373 0.52 +0.4 2,501,774 - MPMX20_02373 0.52 +1.4 2,501,774 - MPMX20_02373 0.52 -2.6 2,501,812 + MPMX20_02373 0.55 +1.6 2,501,812 + MPMX20_02373 0.55 +0.5 2,501,820 - MPMX20_02373 0.56 +1.7 2,501,820 - MPMX20_02373 0.56 -0.3 2,501,820 - MPMX20_02373 0.56 -3.7 2,501,820 - MPMX20_02373 0.56 +1.0 2,501,820 - MPMX20_02373 0.56 -3.2 2,501,857 - MPMX20_02373 0.59 -0.2 2,501,857 - MPMX20_02373 0.59 +1.3 2,501,857 - MPMX20_02373 0.59 -1.9 2,501,895 - MPMX20_02373 0.62 -1.9 2,501,906 + MPMX20_02373 0.63 +1.0 2,501,963 + MPMX20_02373 0.67 +0.0 2,501,988 + MPMX20_02373 0.69 +0.6 2,502,030 - MPMX20_02373 0.73 -2.7 2,502,041 - MPMX20_02373 0.74 -0.9 2,502,064 + MPMX20_02373 0.76 -1.2 2,502,071 + MPMX20_02373 0.76 +1.9 2,502,141 + MPMX20_02373 0.82 +0.7 2,502,141 + MPMX20_02373 0.82 +0.2 2,502,167 + MPMX20_02373 0.84 +0.7 2,502,167 - MPMX20_02373 0.84 +1.3 2,502,167 - MPMX20_02373 0.84 +1.8 2,502,174 - MPMX20_02373 0.85 +2.4 2,502,176 + MPMX20_02373 0.85 -2.2 2,502,176 + MPMX20_02373 0.85 +1.7 2,502,176 + MPMX20_02373 0.85 -0.3 2,502,176 + MPMX20_02373 0.85 +0.1 2,502,176 + MPMX20_02373 0.85 +1.5 2,502,176 + MPMX20_02373 0.85 +0.3 2,502,180 + MPMX20_02373 0.85 +1.4 2,502,184 - MPMX20_02373 0.86 +0.0 2,502,184 - MPMX20_02373 0.86 -0.6 2,502,184 - MPMX20_02373 0.86 -0.2 2,502,184 - MPMX20_02373 0.86 -1.2 2,502,184 - MPMX20_02373 0.86 -1.7 2,502,215 + MPMX20_02373 0.88 -2.5 2,502,223 - MPMX20_02373 0.89 -0.9 2,502,227 - MPMX20_02373 0.89 +2.0 2,502,291 + -1.7 2,502,303 + -2.2 2,502,311 - +0.8 2,502,433 - +0.3 2,502,433 - -0.2 2,502,445 - +0.7 2,502,475 - +0.3 2,502,506 - MPMX20_02374 0.10 +1.7 2,502,713 - MPMX20_02374 0.28 -3.6 2,502,737 + MPMX20_02374 0.30 +1.8 2,502,745 - MPMX20_02374 0.31 +1.7 2,502,782 - MPMX20_02374 0.34 +1.0 2,502,823 + MPMX20_02374 0.37 -0.0 2,502,902 + MPMX20_02374 0.44 +0.8 2,502,902 + MPMX20_02374 0.44 +2.6 2,502,902 + MPMX20_02374 0.44 +1.6 2,502,912 - MPMX20_02374 0.45 +1.5 2,503,016 + MPMX20_02374 0.54 -0.9 2,503,022 - MPMX20_02374 0.54 -2.2 2,503,031 + MPMX20_02374 0.55 -1.2 2,503,039 - MPMX20_02374 0.55 -3.5 2,503,039 - MPMX20_02374 0.55 -2.5 2,503,039 - MPMX20_02374 0.55 +0.4 2,503,039 - MPMX20_02374 0.55 -0.9 2,503,041 + MPMX20_02374 0.56 +1.3 2,503,044 - MPMX20_02374 0.56 +1.0 2,503,044 - MPMX20_02374 0.56 -1.9 2,503,061 + MPMX20_02374 0.57 +1.2 2,503,061 + MPMX20_02374 0.57 +0.2 2,503,069 - MPMX20_02374 0.58 -3.4 2,503,104 + MPMX20_02374 0.61 -2.8 2,503,121 + MPMX20_02374 0.62 -0.6 2,503,124 - MPMX20_02374 0.63 -1.5 2,503,126 - MPMX20_02374 0.63 +0.4 2,503,128 + MPMX20_02374 0.63 -0.3 2,503,128 + MPMX20_02374 0.63 -0.3 2,503,138 + MPMX20_02374 0.64 +1.2 2,503,192 - MPMX20_02374 0.68 -0.2 2,503,273 + MPMX20_02374 0.75 +0.9 2,503,328 + MPMX20_02374 0.80 +1.3
Or see this region's nucleotide sequence