Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02825

Experiment: L-Valine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_02823 and MPMX20_02824 overlap by 4 nucleotidesMPMX20_02824 and MPMX20_02825 are separated by 103 nucleotidesMPMX20_02825 and MPMX20_02826 are separated by 285 nucleotides MPMX20_02823: MPMX20_02823 - Lipopolysaccharide export system ATP-binding protein LptB, at 2,981,998 to 2,982,873 _02823 MPMX20_02824: MPMX20_02824 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 2,982,870 to 2,983,586 _02824 MPMX20_02825: MPMX20_02825 - Cold shock-like protein CspB, at 2,983,690 to 2,983,902 _02825 MPMX20_02826: MPMX20_02826 - Cold shock-like protein CspB, at 2,984,188 to 2,984,406 _02826 Position (kb) 2983 2984Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 2982.698 kb on + strand, within MPMX20_02823at 2982.698 kb on + strand, within MPMX20_02823at 2982.731 kb on - strand, within MPMX20_02823at 2982.755 kb on + strand, within MPMX20_02823at 2982.755 kb on + strand, within MPMX20_02823at 2982.755 kb on + strand, within MPMX20_02823at 2982.763 kb on - strand, within MPMX20_02823at 2982.789 kb on - strandat 2982.792 kb on + strandat 2982.792 kb on + strandat 2982.797 kb on + strandat 2982.797 kb on + strandat 2982.800 kb on - strandat 2982.800 kb on - strandat 2982.800 kb on - strandat 2982.800 kb on - strandat 2982.800 kb on - strandat 2982.800 kb on - strandat 2982.800 kb on - strandat 2982.800 kb on - strandat 2982.800 kb on - strandat 2982.805 kb on - strandat 2982.807 kb on + strandat 2982.815 kb on - strandat 2982.866 kb on + strandat 2982.876 kb on - strandat 2982.903 kb on + strandat 2982.908 kb on + strandat 2982.916 kb on + strandat 2982.916 kb on - strandat 2982.943 kb on + strand, within MPMX20_02824at 2982.943 kb on + strand, within MPMX20_02824at 2982.980 kb on - strand, within MPMX20_02824at 2983.040 kb on - strand, within MPMX20_02824at 2983.086 kb on - strand, within MPMX20_02824at 2983.156 kb on + strand, within MPMX20_02824at 2983.164 kb on - strand, within MPMX20_02824at 2983.169 kb on - strand, within MPMX20_02824at 2983.175 kb on + strand, within MPMX20_02824at 2983.221 kb on - strand, within MPMX20_02824at 2983.228 kb on + strand, within MPMX20_02824at 2983.228 kb on + strand, within MPMX20_02824at 2983.231 kb on - strand, within MPMX20_02824at 2983.236 kb on - strand, within MPMX20_02824at 2983.236 kb on - strand, within MPMX20_02824at 2983.236 kb on - strand, within MPMX20_02824at 2983.246 kb on - strand, within MPMX20_02824at 2983.333 kb on + strand, within MPMX20_02824at 2983.333 kb on + strand, within MPMX20_02824at 2983.333 kb on + strand, within MPMX20_02824at 2983.333 kb on + strand, within MPMX20_02824at 2983.333 kb on + strand, within MPMX20_02824at 2983.341 kb on - strand, within MPMX20_02824at 2983.341 kb on - strand, within MPMX20_02824at 2983.341 kb on - strand, within MPMX20_02824at 2983.341 kb on - strand, within MPMX20_02824at 2983.341 kb on - strand, within MPMX20_02824at 2983.341 kb on - strand, within MPMX20_02824at 2983.376 kb on - strand, within MPMX20_02824at 2983.467 kb on + strand, within MPMX20_02824at 2983.468 kb on + strand, within MPMX20_02824at 2983.476 kb on - strand, within MPMX20_02824at 2983.476 kb on - strand, within MPMX20_02824at 2983.492 kb on + strand, within MPMX20_02824at 2983.492 kb on + strand, within MPMX20_02824at 2983.493 kb on + strand, within MPMX20_02824at 2983.494 kb on + strand, within MPMX20_02824at 2983.494 kb on + strand, within MPMX20_02824at 2983.521 kb on + strandat 2983.530 kb on + strandat 2983.531 kb on + strandat 2983.531 kb on + strandat 2983.538 kb on + strandat 2983.581 kb on + strandat 2983.581 kb on + strandat 2983.581 kb on + strandat 2983.581 kb on + strandat 2983.581 kb on + strandat 2983.581 kb on + strandat 2983.581 kb on + strandat 2983.581 kb on + strandat 2983.581 kb on + strandat 2983.581 kb on + strandat 2983.581 kb on + strandat 2983.581 kb on + strandat 2983.581 kb on + strandat 2983.581 kb on + strandat 2983.595 kb on + strandat 2983.612 kb on + strandat 2983.739 kb on + strand, within MPMX20_02825at 2983.739 kb on + strand, within MPMX20_02825at 2983.739 kb on + strand, within MPMX20_02825at 2983.739 kb on + strand, within MPMX20_02825at 2983.840 kb on + strand, within MPMX20_02825at 2983.846 kb on + strand, within MPMX20_02825at 2983.846 kb on + strand, within MPMX20_02825at 2983.858 kb on + strand, within MPMX20_02825at 2983.858 kb on + strand, within MPMX20_02825at 2984.095 kb on + strandat 2984.106 kb on + strandat 2984.279 kb on - strand, within MPMX20_02826at 2984.296 kb on - strand, within MPMX20_02826at 2984.368 kb on + strand, within MPMX20_02826at 2984.384 kb on + strand, within MPMX20_02826at 2984.384 kb on + strand, within MPMX20_02826at 2984.384 kb on + strand, within MPMX20_02826at 2984.384 kb on + strand, within MPMX20_02826at 2984.526 kb on - strandat 2984.526 kb on - strandat 2984.526 kb on - strandat 2984.530 kb on - strandat 2984.538 kb on + strandat 2984.538 kb on - strandat 2984.546 kb on - strandat 2984.732 kb on + strandat 2984.740 kb on - strandat 2984.744 kb on + strandat 2984.752 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
remove
2,982,698 + MPMX20_02823 0.80 -2.1
2,982,698 + MPMX20_02823 0.80 -3.1
2,982,731 - MPMX20_02823 0.84 +0.8
2,982,755 + MPMX20_02823 0.86 +0.7
2,982,755 + MPMX20_02823 0.86 -3.2
2,982,755 + MPMX20_02823 0.86 +0.0
2,982,763 - MPMX20_02823 0.87 +0.7
2,982,789 - -2.3
2,982,792 + +0.8
2,982,792 + -0.2
2,982,797 + +0.4
2,982,797 + +0.8
2,982,800 - +2.9
2,982,800 - +0.6
2,982,800 - -0.1
2,982,800 - +0.8
2,982,800 - -1.6
2,982,800 - -1.3
2,982,800 - -0.6
2,982,800 - -3.2
2,982,800 - -2.4
2,982,805 - -1.9
2,982,807 + -0.2
2,982,815 - -0.1
2,982,866 + -4.9
2,982,876 - +1.0
2,982,903 + +0.4
2,982,908 + +0.1
2,982,916 + +0.8
2,982,916 - +1.1
2,982,943 + MPMX20_02824 0.10 -3.8
2,982,943 + MPMX20_02824 0.10 +0.2
2,982,980 - MPMX20_02824 0.15 +0.2
2,983,040 - MPMX20_02824 0.24 +1.3
2,983,086 - MPMX20_02824 0.30 -0.9
2,983,156 + MPMX20_02824 0.40 +0.2
2,983,164 - MPMX20_02824 0.41 -0.3
2,983,169 - MPMX20_02824 0.42 -0.6
2,983,175 + MPMX20_02824 0.43 -3.6
2,983,221 - MPMX20_02824 0.49 -1.2
2,983,228 + MPMX20_02824 0.50 -1.8
2,983,228 + MPMX20_02824 0.50 +0.6
2,983,231 - MPMX20_02824 0.50 +0.2
2,983,236 - MPMX20_02824 0.51 -0.5
2,983,236 - MPMX20_02824 0.51 +1.3
2,983,236 - MPMX20_02824 0.51 -0.0
2,983,246 - MPMX20_02824 0.52 -0.9
2,983,333 + MPMX20_02824 0.65 +1.4
2,983,333 + MPMX20_02824 0.65 +0.3
2,983,333 + MPMX20_02824 0.65 +0.8
2,983,333 + MPMX20_02824 0.65 -1.2
2,983,333 + MPMX20_02824 0.65 -0.8
2,983,341 - MPMX20_02824 0.66 -1.2
2,983,341 - MPMX20_02824 0.66 -1.4
2,983,341 - MPMX20_02824 0.66 -1.3
2,983,341 - MPMX20_02824 0.66 -3.5
2,983,341 - MPMX20_02824 0.66 -0.9
2,983,341 - MPMX20_02824 0.66 -0.1
2,983,376 - MPMX20_02824 0.71 -2.1
2,983,467 + MPMX20_02824 0.83 -0.1
2,983,468 + MPMX20_02824 0.83 -1.4
2,983,476 - MPMX20_02824 0.85 -0.9
2,983,476 - MPMX20_02824 0.85 +0.9
2,983,492 + MPMX20_02824 0.87 +0.2
2,983,492 + MPMX20_02824 0.87 -0.0
2,983,493 + MPMX20_02824 0.87 +1.5
2,983,494 + MPMX20_02824 0.87 +0.1
2,983,494 + MPMX20_02824 0.87 -2.5
2,983,521 + +0.2
2,983,530 + -2.3
2,983,531 + -2.3
2,983,531 + -1.6
2,983,538 + -0.4
2,983,581 + -0.3
2,983,581 + -1.4
2,983,581 + -2.8
2,983,581 + -2.8
2,983,581 + +0.7
2,983,581 + -3.3
2,983,581 + -1.2
2,983,581 + -4.4
2,983,581 + -2.5
2,983,581 + -2.2
2,983,581 + +2.2
2,983,581 + -1.4
2,983,581 + -1.2
2,983,581 + +1.2
2,983,595 + -0.9
2,983,612 + -1.9
2,983,739 + MPMX20_02825 0.23 -0.9
2,983,739 + MPMX20_02825 0.23 -2.1
2,983,739 + MPMX20_02825 0.23 -1.6
2,983,739 + MPMX20_02825 0.23 -1.1
2,983,840 + MPMX20_02825 0.70 -1.4
2,983,846 + MPMX20_02825 0.73 -2.4
2,983,846 + MPMX20_02825 0.73 +2.0
2,983,858 + MPMX20_02825 0.79 -1.6
2,983,858 + MPMX20_02825 0.79 +1.9
2,984,095 + -2.8
2,984,106 + -2.6
2,984,279 - MPMX20_02826 0.42 -1.6
2,984,296 - MPMX20_02826 0.49 -1.6
2,984,368 + MPMX20_02826 0.82 -0.2
2,984,384 + MPMX20_02826 0.89 -2.7
2,984,384 + MPMX20_02826 0.89 -0.9
2,984,384 + MPMX20_02826 0.89 -1.2
2,984,384 + MPMX20_02826 0.89 -1.2
2,984,526 - -2.1
2,984,526 - -3.6
2,984,526 - +0.6
2,984,530 - -3.9
2,984,538 + +3.0
2,984,538 - -1.9
2,984,546 - -2.2
2,984,732 + -1.8
2,984,740 - -2.3
2,984,744 + +1.1
2,984,752 - -2.2

Or see this region's nucleotide sequence