Experiment: L-Valine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02823 and MPMX20_02824 overlap by 4 nucleotides MPMX20_02824 and MPMX20_02825 are separated by 103 nucleotides MPMX20_02825 and MPMX20_02826 are separated by 285 nucleotides
MPMX20_02823: MPMX20_02823 - Lipopolysaccharide export system ATP-binding protein LptB, at 2,981,998 to 2,982,873
_02823
MPMX20_02824: MPMX20_02824 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 2,982,870 to 2,983,586
_02824
MPMX20_02825: MPMX20_02825 - Cold shock-like protein CspB, at 2,983,690 to 2,983,902
_02825
MPMX20_02826: MPMX20_02826 - Cold shock-like protein CspB, at 2,984,188 to 2,984,406
_02826
Position (kb)
2983
2984 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 2982.698 kb on + strand, within MPMX20_02823 at 2982.698 kb on + strand, within MPMX20_02823 at 2982.731 kb on - strand, within MPMX20_02823 at 2982.755 kb on + strand, within MPMX20_02823 at 2982.755 kb on + strand, within MPMX20_02823 at 2982.755 kb on + strand, within MPMX20_02823 at 2982.763 kb on - strand, within MPMX20_02823 at 2982.789 kb on - strand at 2982.792 kb on + strand at 2982.792 kb on + strand at 2982.797 kb on + strand at 2982.797 kb on + strand at 2982.800 kb on - strand at 2982.800 kb on - strand at 2982.800 kb on - strand at 2982.800 kb on - strand at 2982.800 kb on - strand at 2982.800 kb on - strand at 2982.800 kb on - strand at 2982.800 kb on - strand at 2982.800 kb on - strand at 2982.805 kb on - strand at 2982.807 kb on + strand at 2982.815 kb on - strand at 2982.866 kb on + strand at 2982.876 kb on - strand at 2982.903 kb on + strand at 2982.908 kb on + strand at 2982.916 kb on + strand at 2982.916 kb on - strand at 2982.943 kb on + strand, within MPMX20_02824 at 2982.943 kb on + strand, within MPMX20_02824 at 2982.980 kb on - strand, within MPMX20_02824 at 2983.040 kb on - strand, within MPMX20_02824 at 2983.086 kb on - strand, within MPMX20_02824 at 2983.156 kb on + strand, within MPMX20_02824 at 2983.164 kb on - strand, within MPMX20_02824 at 2983.169 kb on - strand, within MPMX20_02824 at 2983.175 kb on + strand, within MPMX20_02824 at 2983.221 kb on - strand, within MPMX20_02824 at 2983.228 kb on + strand, within MPMX20_02824 at 2983.228 kb on + strand, within MPMX20_02824 at 2983.231 kb on - strand, within MPMX20_02824 at 2983.236 kb on - strand, within MPMX20_02824 at 2983.236 kb on - strand, within MPMX20_02824 at 2983.236 kb on - strand, within MPMX20_02824 at 2983.246 kb on - strand, within MPMX20_02824 at 2983.333 kb on + strand, within MPMX20_02824 at 2983.333 kb on + strand, within MPMX20_02824 at 2983.333 kb on + strand, within MPMX20_02824 at 2983.333 kb on + strand, within MPMX20_02824 at 2983.333 kb on + strand, within MPMX20_02824 at 2983.341 kb on - strand, within MPMX20_02824 at 2983.341 kb on - strand, within MPMX20_02824 at 2983.341 kb on - strand, within MPMX20_02824 at 2983.341 kb on - strand, within MPMX20_02824 at 2983.341 kb on - strand, within MPMX20_02824 at 2983.341 kb on - strand, within MPMX20_02824 at 2983.376 kb on - strand, within MPMX20_02824 at 2983.467 kb on + strand, within MPMX20_02824 at 2983.468 kb on + strand, within MPMX20_02824 at 2983.476 kb on - strand, within MPMX20_02824 at 2983.476 kb on - strand, within MPMX20_02824 at 2983.492 kb on + strand, within MPMX20_02824 at 2983.492 kb on + strand, within MPMX20_02824 at 2983.493 kb on + strand, within MPMX20_02824 at 2983.494 kb on + strand, within MPMX20_02824 at 2983.494 kb on + strand, within MPMX20_02824 at 2983.521 kb on + strand at 2983.530 kb on + strand at 2983.531 kb on + strand at 2983.531 kb on + strand at 2983.538 kb on + strand at 2983.581 kb on + strand at 2983.581 kb on + strand at 2983.581 kb on + strand at 2983.581 kb on + strand at 2983.581 kb on + strand at 2983.581 kb on + strand at 2983.581 kb on + strand at 2983.581 kb on + strand at 2983.581 kb on + strand at 2983.581 kb on + strand at 2983.581 kb on + strand at 2983.581 kb on + strand at 2983.581 kb on + strand at 2983.581 kb on + strand at 2983.595 kb on + strand at 2983.612 kb on + strand at 2983.739 kb on + strand, within MPMX20_02825 at 2983.739 kb on + strand, within MPMX20_02825 at 2983.739 kb on + strand, within MPMX20_02825 at 2983.739 kb on + strand, within MPMX20_02825 at 2983.840 kb on + strand, within MPMX20_02825 at 2983.846 kb on + strand, within MPMX20_02825 at 2983.846 kb on + strand, within MPMX20_02825 at 2983.858 kb on + strand, within MPMX20_02825 at 2983.858 kb on + strand, within MPMX20_02825 at 2984.095 kb on + strand at 2984.106 kb on + strand at 2984.279 kb on - strand, within MPMX20_02826 at 2984.296 kb on - strand, within MPMX20_02826 at 2984.368 kb on + strand, within MPMX20_02826 at 2984.384 kb on + strand, within MPMX20_02826 at 2984.384 kb on + strand, within MPMX20_02826 at 2984.384 kb on + strand, within MPMX20_02826 at 2984.384 kb on + strand, within MPMX20_02826 at 2984.526 kb on - strand at 2984.526 kb on - strand at 2984.526 kb on - strand at 2984.530 kb on - strand at 2984.538 kb on + strand at 2984.538 kb on - strand at 2984.546 kb on - strand at 2984.732 kb on + strand at 2984.740 kb on - strand at 2984.744 kb on + strand at 2984.752 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) remove 2,982,698 + MPMX20_02823 0.80 -2.1 2,982,698 + MPMX20_02823 0.80 -3.1 2,982,731 - MPMX20_02823 0.84 +0.8 2,982,755 + MPMX20_02823 0.86 +0.7 2,982,755 + MPMX20_02823 0.86 -3.2 2,982,755 + MPMX20_02823 0.86 +0.0 2,982,763 - MPMX20_02823 0.87 +0.7 2,982,789 - -2.3 2,982,792 + +0.8 2,982,792 + -0.2 2,982,797 + +0.4 2,982,797 + +0.8 2,982,800 - +2.9 2,982,800 - +0.6 2,982,800 - -0.1 2,982,800 - +0.8 2,982,800 - -1.6 2,982,800 - -1.3 2,982,800 - -0.6 2,982,800 - -3.2 2,982,800 - -2.4 2,982,805 - -1.9 2,982,807 + -0.2 2,982,815 - -0.1 2,982,866 + -4.9 2,982,876 - +1.0 2,982,903 + +0.4 2,982,908 + +0.1 2,982,916 + +0.8 2,982,916 - +1.1 2,982,943 + MPMX20_02824 0.10 -3.8 2,982,943 + MPMX20_02824 0.10 +0.2 2,982,980 - MPMX20_02824 0.15 +0.2 2,983,040 - MPMX20_02824 0.24 +1.3 2,983,086 - MPMX20_02824 0.30 -0.9 2,983,156 + MPMX20_02824 0.40 +0.2 2,983,164 - MPMX20_02824 0.41 -0.3 2,983,169 - MPMX20_02824 0.42 -0.6 2,983,175 + MPMX20_02824 0.43 -3.6 2,983,221 - MPMX20_02824 0.49 -1.2 2,983,228 + MPMX20_02824 0.50 -1.8 2,983,228 + MPMX20_02824 0.50 +0.6 2,983,231 - MPMX20_02824 0.50 +0.2 2,983,236 - MPMX20_02824 0.51 -0.5 2,983,236 - MPMX20_02824 0.51 +1.3 2,983,236 - MPMX20_02824 0.51 -0.0 2,983,246 - MPMX20_02824 0.52 -0.9 2,983,333 + MPMX20_02824 0.65 +1.4 2,983,333 + MPMX20_02824 0.65 +0.3 2,983,333 + MPMX20_02824 0.65 +0.8 2,983,333 + MPMX20_02824 0.65 -1.2 2,983,333 + MPMX20_02824 0.65 -0.8 2,983,341 - MPMX20_02824 0.66 -1.2 2,983,341 - MPMX20_02824 0.66 -1.4 2,983,341 - MPMX20_02824 0.66 -1.3 2,983,341 - MPMX20_02824 0.66 -3.5 2,983,341 - MPMX20_02824 0.66 -0.9 2,983,341 - MPMX20_02824 0.66 -0.1 2,983,376 - MPMX20_02824 0.71 -2.1 2,983,467 + MPMX20_02824 0.83 -0.1 2,983,468 + MPMX20_02824 0.83 -1.4 2,983,476 - MPMX20_02824 0.85 -0.9 2,983,476 - MPMX20_02824 0.85 +0.9 2,983,492 + MPMX20_02824 0.87 +0.2 2,983,492 + MPMX20_02824 0.87 -0.0 2,983,493 + MPMX20_02824 0.87 +1.5 2,983,494 + MPMX20_02824 0.87 +0.1 2,983,494 + MPMX20_02824 0.87 -2.5 2,983,521 + +0.2 2,983,530 + -2.3 2,983,531 + -2.3 2,983,531 + -1.6 2,983,538 + -0.4 2,983,581 + -0.3 2,983,581 + -1.4 2,983,581 + -2.8 2,983,581 + -2.8 2,983,581 + +0.7 2,983,581 + -3.3 2,983,581 + -1.2 2,983,581 + -4.4 2,983,581 + -2.5 2,983,581 + -2.2 2,983,581 + +2.2 2,983,581 + -1.4 2,983,581 + -1.2 2,983,581 + +1.2 2,983,595 + -0.9 2,983,612 + -1.9 2,983,739 + MPMX20_02825 0.23 -0.9 2,983,739 + MPMX20_02825 0.23 -2.1 2,983,739 + MPMX20_02825 0.23 -1.6 2,983,739 + MPMX20_02825 0.23 -1.1 2,983,840 + MPMX20_02825 0.70 -1.4 2,983,846 + MPMX20_02825 0.73 -2.4 2,983,846 + MPMX20_02825 0.73 +2.0 2,983,858 + MPMX20_02825 0.79 -1.6 2,983,858 + MPMX20_02825 0.79 +1.9 2,984,095 + -2.8 2,984,106 + -2.6 2,984,279 - MPMX20_02826 0.42 -1.6 2,984,296 - MPMX20_02826 0.49 -1.6 2,984,368 + MPMX20_02826 0.82 -0.2 2,984,384 + MPMX20_02826 0.89 -2.7 2,984,384 + MPMX20_02826 0.89 -0.9 2,984,384 + MPMX20_02826 0.89 -1.2 2,984,384 + MPMX20_02826 0.89 -1.2 2,984,526 - -2.1 2,984,526 - -3.6 2,984,526 - +0.6 2,984,530 - -3.9 2,984,538 + +3.0 2,984,538 - -1.9 2,984,546 - -2.2 2,984,732 + -1.8 2,984,740 - -2.3 2,984,744 + +1.1 2,984,752 - -2.2
Or see this region's nucleotide sequence