Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00517

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00515 and MPMX20_00516 are separated by 93 nucleotidesMPMX20_00516 and MPMX20_00517 are separated by 95 nucleotidesMPMX20_00517 and MPMX20_00518 are separated by 41 nucleotidesMPMX20_00518 and MPMX20_00519 are separated by 336 nucleotides MPMX20_00515: MPMX20_00515 - UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase, at 532,985 to 534,361 _00515 MPMX20_00516: MPMX20_00516 - hypothetical protein, at 534,455 to 535,006 _00516 MPMX20_00517: MPMX20_00517 - Metalloprotease PmbA, at 535,102 to 536,454 _00517 MPMX20_00518: MPMX20_00518 - Soluble cytochrome b562, at 536,496 to 536,882 _00518 MPMX20_00519: MPMX20_00519 - hypothetical protein, at 537,219 to 537,539 _00519 Position (kb) 535 536 537Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 534.114 kb on + strand, within MPMX20_00515at 534.122 kb on - strand, within MPMX20_00515at 534.205 kb on + strand, within MPMX20_00515at 534.211 kb on - strand, within MPMX20_00515at 534.244 kb on + strandat 534.259 kb on + strandat 534.335 kb on - strandat 534.411 kb on - strandat 534.427 kb on + strandat 534.435 kb on - strandat 534.437 kb on - strandat 534.448 kb on - strandat 534.460 kb on - strandat 535.036 kb on - strandat 535.047 kb on + strandat 535.063 kb on - strandat 535.070 kb on + strandat 535.070 kb on + strandat 535.078 kb on - strandat 535.090 kb on + strandat 535.100 kb on + strandat 535.100 kb on - strandat 535.100 kb on - strandat 535.100 kb on - strandat 535.108 kb on - strandat 535.125 kb on - strandat 535.143 kb on + strandat 535.151 kb on - strandat 535.177 kb on - strandat 535.370 kb on + strand, within MPMX20_00517at 535.457 kb on - strand, within MPMX20_00517at 535.542 kb on - strand, within MPMX20_00517at 535.542 kb on - strand, within MPMX20_00517at 535.625 kb on + strand, within MPMX20_00517at 535.644 kb on + strand, within MPMX20_00517at 535.649 kb on - strand, within MPMX20_00517at 535.674 kb on - strand, within MPMX20_00517at 535.753 kb on - strand, within MPMX20_00517at 535.970 kb on + strand, within MPMX20_00517at 535.970 kb on + strand, within MPMX20_00517at 535.978 kb on - strand, within MPMX20_00517at 535.978 kb on - strand, within MPMX20_00517at 536.014 kb on - strand, within MPMX20_00517at 536.141 kb on + strand, within MPMX20_00517at 536.164 kb on + strand, within MPMX20_00517at 536.170 kb on + strand, within MPMX20_00517at 536.178 kb on - strand, within MPMX20_00517at 536.185 kb on - strand, within MPMX20_00517at 536.185 kb on - strand, within MPMX20_00517at 536.185 kb on - strand, within MPMX20_00517at 536.185 kb on - strand, within MPMX20_00517at 536.185 kb on - strand, within MPMX20_00517at 536.286 kb on - strand, within MPMX20_00517at 536.288 kb on + strand, within MPMX20_00517at 536.288 kb on + strand, within MPMX20_00517at 536.290 kb on + strand, within MPMX20_00517at 536.296 kb on - strand, within MPMX20_00517at 536.343 kb on + strandat 536.343 kb on + strandat 536.343 kb on + strandat 536.352 kb on - strandat 536.384 kb on - strandat 536.399 kb on + strandat 536.399 kb on + strandat 536.399 kb on + strandat 536.399 kb on + strandat 536.399 kb on + strandat 536.399 kb on + strandat 536.399 kb on + strandat 536.399 kb on + strandat 536.399 kb on + strandat 536.399 kb on + strandat 536.399 kb on + strandat 536.399 kb on + strandat 536.399 kb on + strandat 536.404 kb on + strandat 536.407 kb on - strandat 536.407 kb on - strandat 536.407 kb on - strandat 536.407 kb on - strandat 536.407 kb on - strandat 536.407 kb on - strandat 536.407 kb on - strandat 536.407 kb on - strandat 536.407 kb on - strandat 536.407 kb on - strandat 536.407 kb on - strandat 536.409 kb on + strandat 536.409 kb on + strandat 536.409 kb on + strandat 536.417 kb on - strandat 536.417 kb on - strandat 536.459 kb on - strandat 536.466 kb on - strandat 536.508 kb on - strandat 536.527 kb on + strandat 536.545 kb on - strand, within MPMX20_00518at 536.545 kb on - strand, within MPMX20_00518at 536.576 kb on + strand, within MPMX20_00518at 536.600 kb on + strand, within MPMX20_00518at 536.608 kb on - strand, within MPMX20_00518at 536.608 kb on - strand, within MPMX20_00518at 536.660 kb on + strand, within MPMX20_00518at 536.733 kb on - strand, within MPMX20_00518at 536.752 kb on + strand, within MPMX20_00518at 536.760 kb on + strand, within MPMX20_00518at 536.760 kb on - strand, within MPMX20_00518at 536.774 kb on + strand, within MPMX20_00518at 536.774 kb on + strand, within MPMX20_00518at 536.782 kb on - strand, within MPMX20_00518at 536.782 kb on - strand, within MPMX20_00518at 536.782 kb on - strand, within MPMX20_00518at 536.784 kb on + strand, within MPMX20_00518at 536.784 kb on + strand, within MPMX20_00518at 536.792 kb on - strand, within MPMX20_00518at 536.820 kb on + strand, within MPMX20_00518at 536.840 kb on + strand, within MPMX20_00518at 536.840 kb on + strand, within MPMX20_00518at 536.848 kb on - strandat 537.012 kb on + strandat 537.020 kb on - strandat 537.088 kb on + strandat 537.090 kb on + strandat 537.093 kb on + strandat 537.093 kb on + strandat 537.101 kb on - strandat 537.101 kb on - strandat 537.101 kb on - strandat 537.101 kb on - strandat 537.101 kb on - strandat 537.101 kb on - strandat 537.101 kb on - strandat 537.104 kb on + strandat 537.104 kb on + strandat 537.104 kb on + strandat 537.119 kb on - strandat 537.196 kb on + strandat 537.216 kb on + strandat 537.224 kb on - strandat 537.224 kb on - strandat 537.242 kb on + strandat 537.250 kb on + strandat 537.260 kb on + strand, within MPMX20_00519at 537.268 kb on - strand, within MPMX20_00519at 537.274 kb on - strand, within MPMX20_00519at 537.281 kb on + strand, within MPMX20_00519at 537.281 kb on + strand, within MPMX20_00519at 537.281 kb on + strand, within MPMX20_00519at 537.281 kb on + strand, within MPMX20_00519at 537.281 kb on + strand, within MPMX20_00519at 537.281 kb on + strand, within MPMX20_00519at 537.281 kb on + strand, within MPMX20_00519at 537.289 kb on - strand, within MPMX20_00519at 537.291 kb on - strand, within MPMX20_00519at 537.310 kb on - strand, within MPMX20_00519at 537.324 kb on + strand, within MPMX20_00519at 537.351 kb on - strand, within MPMX20_00519at 537.379 kb on + strand, within MPMX20_00519at 537.393 kb on + strand, within MPMX20_00519at 537.398 kb on + strand, within MPMX20_00519at 537.406 kb on - strand, within MPMX20_00519at 537.406 kb on - strand, within MPMX20_00519

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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534,114 + MPMX20_00515 0.82 -3.7
534,122 - MPMX20_00515 0.83 -3.3
534,205 + MPMX20_00515 0.89 +0.6
534,211 - MPMX20_00515 0.89 +1.3
534,244 + +0.9
534,259 + +0.6
534,335 - +0.9
534,411 - -2.1
534,427 + -1.6
534,435 - +0.4
534,437 - +1.9
534,448 - -3.2
534,460 - +1.4
535,036 - +0.5
535,047 + -0.2
535,063 - +0.6
535,070 + -0.9
535,070 + -1.7
535,078 - +1.1
535,090 + +0.2
535,100 + -0.6
535,100 - +0.7
535,100 - +1.0
535,100 - -2.6
535,108 - +3.0
535,125 - +1.3
535,143 + +0.8
535,151 - -0.4
535,177 - +1.2
535,370 + MPMX20_00517 0.20 -0.3
535,457 - MPMX20_00517 0.26 -0.6
535,542 - MPMX20_00517 0.33 -1.6
535,542 - MPMX20_00517 0.33 +1.4
535,625 + MPMX20_00517 0.39 -2.8
535,644 + MPMX20_00517 0.40 -2.4
535,649 - MPMX20_00517 0.40 -2.7
535,674 - MPMX20_00517 0.42 -2.6
535,753 - MPMX20_00517 0.48 -2.1
535,970 + MPMX20_00517 0.64 +1.3
535,970 + MPMX20_00517 0.64 -2.5
535,978 - MPMX20_00517 0.65 -3.1
535,978 - MPMX20_00517 0.65 +1.8
536,014 - MPMX20_00517 0.67 -3.9
536,141 + MPMX20_00517 0.77 -0.4
536,164 + MPMX20_00517 0.78 -3.1
536,170 + MPMX20_00517 0.79 -2.7
536,178 - MPMX20_00517 0.80 +1.8
536,185 - MPMX20_00517 0.80 -2.1
536,185 - MPMX20_00517 0.80 -2.1
536,185 - MPMX20_00517 0.80 -0.8
536,185 - MPMX20_00517 0.80 +1.5
536,185 - MPMX20_00517 0.80 -1.9
536,286 - MPMX20_00517 0.88 -3.7
536,288 + MPMX20_00517 0.88 +1.4
536,288 + MPMX20_00517 0.88 -2.7
536,290 + MPMX20_00517 0.88 +0.0
536,296 - MPMX20_00517 0.88 -1.5
536,343 + -0.2
536,343 + +1.1
536,343 + -2.0
536,352 - -3.1
536,384 - -2.4
536,399 + +0.6
536,399 + +0.6
536,399 + -1.5
536,399 + -0.1
536,399 + -2.3
536,399 + -1.4
536,399 + -0.3
536,399 + +1.8
536,399 + +3.8
536,399 + +1.6
536,399 + -1.4
536,399 + +2.4
536,399 + -1.2
536,404 + -0.4
536,407 - +1.4
536,407 - +2.8
536,407 - +2.5
536,407 - -1.1
536,407 - -0.1
536,407 - -0.1
536,407 - -1.1
536,407 - +0.6
536,407 - -2.4
536,407 - -2.7
536,407 - +0.1
536,409 + -0.3
536,409 + -0.9
536,409 + -1.1
536,417 - +1.2
536,417 - +1.8
536,459 - +1.7
536,466 - +0.4
536,508 - -0.3
536,527 + -0.2
536,545 - MPMX20_00518 0.13 +0.2
536,545 - MPMX20_00518 0.13 +1.7
536,576 + MPMX20_00518 0.21 +0.6
536,600 + MPMX20_00518 0.27 -3.4
536,608 - MPMX20_00518 0.29 +2.3
536,608 - MPMX20_00518 0.29 -0.3
536,660 + MPMX20_00518 0.42 +1.7
536,733 - MPMX20_00518 0.61 +0.1
536,752 + MPMX20_00518 0.66 +1.4
536,760 + MPMX20_00518 0.68 -0.2
536,760 - MPMX20_00518 0.68 -2.0
536,774 + MPMX20_00518 0.72 -0.2
536,774 + MPMX20_00518 0.72 +2.0
536,782 - MPMX20_00518 0.74 +3.6
536,782 - MPMX20_00518 0.74 +0.4
536,782 - MPMX20_00518 0.74 +1.5
536,784 + MPMX20_00518 0.74 +1.3
536,784 + MPMX20_00518 0.74 +0.5
536,792 - MPMX20_00518 0.76 +1.2
536,820 + MPMX20_00518 0.84 +0.8
536,840 + MPMX20_00518 0.89 -2.7
536,840 + MPMX20_00518 0.89 -1.5
536,848 - +0.1
537,012 + +2.1
537,020 - +1.3
537,088 + -1.5
537,090 + -1.4
537,093 + +0.9
537,093 + -0.6
537,101 - -1.9
537,101 - +0.6
537,101 - -0.4
537,101 - -1.5
537,101 - -0.2
537,101 - -0.9
537,101 - -1.1
537,104 + -0.9
537,104 + -1.5
537,104 + +2.2
537,119 - +1.7
537,196 + -1.4
537,216 + -1.4
537,224 - +1.6
537,224 - +1.2
537,242 + +0.4
537,250 + -1.0
537,260 + MPMX20_00519 0.13 -1.6
537,268 - MPMX20_00519 0.15 -0.3
537,274 - MPMX20_00519 0.17 -3.6
537,281 + MPMX20_00519 0.19 -3.3
537,281 + MPMX20_00519 0.19 -0.6
537,281 + MPMX20_00519 0.19 -3.6
537,281 + MPMX20_00519 0.19 -1.5
537,281 + MPMX20_00519 0.19 -1.8
537,281 + MPMX20_00519 0.19 -0.8
537,281 + MPMX20_00519 0.19 -0.8
537,289 - MPMX20_00519 0.22 +0.8
537,291 - MPMX20_00519 0.22 -2.9
537,310 - MPMX20_00519 0.28 -0.8
537,324 + MPMX20_00519 0.33 -0.8
537,351 - MPMX20_00519 0.41 -2.2
537,379 + MPMX20_00519 0.50 +2.4
537,393 + MPMX20_00519 0.54 +1.1
537,398 + MPMX20_00519 0.56 -2.5
537,406 - MPMX20_00519 0.58 -0.4
537,406 - MPMX20_00519 0.58 +2.5

Or see this region's nucleotide sequence