Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03988

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03986 and MPMX20_03987 overlap by 4 nucleotidesMPMX20_03987 and MPMX20_03988 are separated by 11 nucleotidesMPMX20_03988 and MPMX20_03989 overlap by 4 nucleotidesMPMX20_03989 and MPMX20_03990 are separated by 0 nucleotides MPMX20_03986: MPMX20_03986 - (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase, at 4,181,246 to 4,181,539 _03986 MPMX20_03987: MPMX20_03987 - 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase, at 4,181,536 to 4,182,423 _03987 MPMX20_03988: MPMX20_03988 - Autoinducer 2-binding protein LsrB, at 4,182,435 to 4,183,436 _03988 MPMX20_03989: MPMX20_03989 - Autoinducer 2 import system permease protein LsrD, at 4,183,433 to 4,184,416 _03989 MPMX20_03990: MPMX20_03990 - Autoinducer 2 import system permease protein LsrC, at 4,184,417 to 4,185,448 _03990 Position (kb) 4182 4183 4184Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4181.477 kb on + strand, within MPMX20_03986at 4181.477 kb on - strand, within MPMX20_03986at 4181.505 kb on + strand, within MPMX20_03986at 4181.513 kb on - strandat 4181.564 kb on + strandat 4181.642 kb on + strand, within MPMX20_03987at 4181.686 kb on + strand, within MPMX20_03987at 4181.737 kb on + strand, within MPMX20_03987at 4181.748 kb on + strand, within MPMX20_03987at 4181.843 kb on + strand, within MPMX20_03987at 4182.001 kb on - strand, within MPMX20_03987at 4182.001 kb on - strand, within MPMX20_03987at 4182.001 kb on - strand, within MPMX20_03987at 4182.135 kb on + strand, within MPMX20_03987at 4182.136 kb on - strand, within MPMX20_03987at 4182.190 kb on - strand, within MPMX20_03987at 4182.216 kb on + strand, within MPMX20_03987at 4182.224 kb on - strand, within MPMX20_03987at 4182.224 kb on - strand, within MPMX20_03987at 4182.224 kb on - strand, within MPMX20_03987at 4182.224 kb on - strand, within MPMX20_03987at 4182.224 kb on - strand, within MPMX20_03987at 4182.305 kb on + strand, within MPMX20_03987at 4182.313 kb on - strand, within MPMX20_03987at 4182.328 kb on - strand, within MPMX20_03987at 4182.343 kb on + strandat 4182.350 kb on - strandat 4182.350 kb on - strandat 4182.371 kb on + strandat 4182.473 kb on - strandat 4182.491 kb on + strandat 4182.507 kb on - strandat 4182.519 kb on - strandat 4182.533 kb on - strandat 4182.580 kb on - strand, within MPMX20_03988at 4182.590 kb on + strand, within MPMX20_03988at 4182.666 kb on + strand, within MPMX20_03988at 4182.673 kb on + strand, within MPMX20_03988at 4182.680 kb on - strand, within MPMX20_03988at 4182.690 kb on - strand, within MPMX20_03988at 4182.694 kb on + strand, within MPMX20_03988at 4182.700 kb on - strand, within MPMX20_03988at 4182.702 kb on - strand, within MPMX20_03988at 4182.710 kb on + strand, within MPMX20_03988at 4182.718 kb on - strand, within MPMX20_03988at 4182.743 kb on - strand, within MPMX20_03988at 4182.881 kb on - strand, within MPMX20_03988at 4182.892 kb on + strand, within MPMX20_03988at 4182.906 kb on - strand, within MPMX20_03988at 4182.933 kb on - strand, within MPMX20_03988at 4182.959 kb on + strand, within MPMX20_03988at 4182.967 kb on - strand, within MPMX20_03988at 4182.976 kb on - strand, within MPMX20_03988at 4182.979 kb on + strand, within MPMX20_03988at 4182.987 kb on - strand, within MPMX20_03988at 4182.992 kb on + strand, within MPMX20_03988at 4183.053 kb on - strand, within MPMX20_03988at 4183.055 kb on + strand, within MPMX20_03988at 4183.063 kb on - strand, within MPMX20_03988at 4183.073 kb on - strand, within MPMX20_03988at 4183.074 kb on + strand, within MPMX20_03988at 4183.116 kb on + strand, within MPMX20_03988at 4183.116 kb on + strand, within MPMX20_03988at 4183.116 kb on + strand, within MPMX20_03988at 4183.124 kb on - strand, within MPMX20_03988at 4183.124 kb on - strand, within MPMX20_03988at 4183.129 kb on - strand, within MPMX20_03988at 4183.134 kb on + strand, within MPMX20_03988at 4183.149 kb on + strand, within MPMX20_03988at 4183.149 kb on + strand, within MPMX20_03988at 4183.209 kb on - strand, within MPMX20_03988at 4183.211 kb on + strand, within MPMX20_03988at 4183.214 kb on - strand, within MPMX20_03988at 4183.229 kb on - strand, within MPMX20_03988at 4183.244 kb on - strand, within MPMX20_03988at 4183.244 kb on - strand, within MPMX20_03988at 4183.269 kb on + strand, within MPMX20_03988at 4183.352 kb on + strandat 4183.393 kb on - strandat 4183.418 kb on - strandat 4183.418 kb on - strandat 4183.527 kb on + strandat 4183.535 kb on - strand, within MPMX20_03989at 4183.571 kb on + strand, within MPMX20_03989at 4183.578 kb on - strand, within MPMX20_03989at 4183.582 kb on + strand, within MPMX20_03989at 4183.607 kb on + strand, within MPMX20_03989at 4183.607 kb on + strand, within MPMX20_03989at 4183.666 kb on + strand, within MPMX20_03989at 4183.666 kb on - strand, within MPMX20_03989at 4183.676 kb on + strand, within MPMX20_03989at 4183.678 kb on + strand, within MPMX20_03989at 4183.678 kb on + strand, within MPMX20_03989at 4183.686 kb on - strand, within MPMX20_03989at 4183.742 kb on - strand, within MPMX20_03989at 4183.834 kb on + strand, within MPMX20_03989at 4183.845 kb on + strand, within MPMX20_03989at 4183.937 kb on + strand, within MPMX20_03989at 4183.945 kb on - strand, within MPMX20_03989at 4183.963 kb on + strand, within MPMX20_03989at 4183.963 kb on + strand, within MPMX20_03989at 4183.971 kb on - strand, within MPMX20_03989at 4183.971 kb on - strand, within MPMX20_03989at 4183.971 kb on - strand, within MPMX20_03989at 4183.971 kb on - strand, within MPMX20_03989at 4183.971 kb on - strand, within MPMX20_03989at 4183.993 kb on - strand, within MPMX20_03989at 4183.993 kb on - strand, within MPMX20_03989at 4184.024 kb on + strand, within MPMX20_03989at 4184.040 kb on + strand, within MPMX20_03989at 4184.109 kb on + strand, within MPMX20_03989at 4184.117 kb on - strand, within MPMX20_03989at 4184.117 kb on - strand, within MPMX20_03989at 4184.117 kb on - strand, within MPMX20_03989at 4184.202 kb on + strand, within MPMX20_03989at 4184.214 kb on + strand, within MPMX20_03989at 4184.257 kb on + strand, within MPMX20_03989at 4184.257 kb on + strand, within MPMX20_03989at 4184.271 kb on - strand, within MPMX20_03989at 4184.307 kb on + strand, within MPMX20_03989at 4184.307 kb on + strand, within MPMX20_03989at 4184.315 kb on - strand, within MPMX20_03989at 4184.352 kb on + strandat 4184.360 kb on - strandat 4184.433 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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4,181,477 + MPMX20_03986 0.79 -3.5
4,181,477 - MPMX20_03986 0.79 -4.8
4,181,505 + MPMX20_03986 0.88 -3.8
4,181,513 - -2.4
4,181,564 + -1.7
4,181,642 + MPMX20_03987 0.12 -1.5
4,181,686 + MPMX20_03987 0.17 +0.2
4,181,737 + MPMX20_03987 0.23 -0.6
4,181,748 + MPMX20_03987 0.24 -1.3
4,181,843 + MPMX20_03987 0.35 -1.0
4,182,001 - MPMX20_03987 0.52 -1.0
4,182,001 - MPMX20_03987 0.52 -2.1
4,182,001 - MPMX20_03987 0.52 -0.1
4,182,135 + MPMX20_03987 0.67 -0.2
4,182,136 - MPMX20_03987 0.68 -1.9
4,182,190 - MPMX20_03987 0.74 +0.7
4,182,216 + MPMX20_03987 0.77 +0.0
4,182,224 - MPMX20_03987 0.77 -0.6
4,182,224 - MPMX20_03987 0.77 -1.3
4,182,224 - MPMX20_03987 0.77 -1.9
4,182,224 - MPMX20_03987 0.77 -0.2
4,182,224 - MPMX20_03987 0.77 -2.2
4,182,305 + MPMX20_03987 0.87 -1.4
4,182,313 - MPMX20_03987 0.88 -1.2
4,182,328 - MPMX20_03987 0.89 -0.9
4,182,343 + -0.9
4,182,350 - -1.8
4,182,350 - -0.4
4,182,371 + -0.9
4,182,473 - -0.1
4,182,491 + -0.2
4,182,507 - -1.9
4,182,519 - -0.1
4,182,533 - +0.5
4,182,580 - MPMX20_03988 0.14 -0.4
4,182,590 + MPMX20_03988 0.15 -0.3
4,182,666 + MPMX20_03988 0.23 -0.1
4,182,673 + MPMX20_03988 0.24 +1.4
4,182,680 - MPMX20_03988 0.24 -0.4
4,182,690 - MPMX20_03988 0.25 -0.8
4,182,694 + MPMX20_03988 0.26 -0.8
4,182,700 - MPMX20_03988 0.26 -1.8
4,182,702 - MPMX20_03988 0.27 +0.9
4,182,710 + MPMX20_03988 0.27 +1.5
4,182,718 - MPMX20_03988 0.28 +0.1
4,182,743 - MPMX20_03988 0.31 -0.1
4,182,881 - MPMX20_03988 0.45 +1.2
4,182,892 + MPMX20_03988 0.46 +0.0
4,182,906 - MPMX20_03988 0.47 +1.0
4,182,933 - MPMX20_03988 0.50 -1.5
4,182,959 + MPMX20_03988 0.52 +0.4
4,182,967 - MPMX20_03988 0.53 +0.4
4,182,976 - MPMX20_03988 0.54 -0.2
4,182,979 + MPMX20_03988 0.54 -0.2
4,182,987 - MPMX20_03988 0.55 -0.6
4,182,992 + MPMX20_03988 0.56 +0.1
4,183,053 - MPMX20_03988 0.62 -1.6
4,183,055 + MPMX20_03988 0.62 +1.0
4,183,063 - MPMX20_03988 0.63 -0.7
4,183,073 - MPMX20_03988 0.64 -1.1
4,183,074 + MPMX20_03988 0.64 +0.7
4,183,116 + MPMX20_03988 0.68 -0.7
4,183,116 + MPMX20_03988 0.68 -0.2
4,183,116 + MPMX20_03988 0.68 -0.4
4,183,124 - MPMX20_03988 0.69 -0.4
4,183,124 - MPMX20_03988 0.69 +0.4
4,183,129 - MPMX20_03988 0.69 +0.0
4,183,134 + MPMX20_03988 0.70 +1.2
4,183,149 + MPMX20_03988 0.71 -0.8
4,183,149 + MPMX20_03988 0.71 -1.5
4,183,209 - MPMX20_03988 0.77 +0.2
4,183,211 + MPMX20_03988 0.77 +0.9
4,183,214 - MPMX20_03988 0.78 -0.6
4,183,229 - MPMX20_03988 0.79 -2.0
4,183,244 - MPMX20_03988 0.81 -0.2
4,183,244 - MPMX20_03988 0.81 -1.3
4,183,269 + MPMX20_03988 0.83 +0.8
4,183,352 + -0.4
4,183,393 - -0.4
4,183,418 - -0.4
4,183,418 - +0.8
4,183,527 + -0.4
4,183,535 - MPMX20_03989 0.10 -0.4
4,183,571 + MPMX20_03989 0.14 -0.0
4,183,578 - MPMX20_03989 0.15 -0.1
4,183,582 + MPMX20_03989 0.15 +0.5
4,183,607 + MPMX20_03989 0.18 +0.6
4,183,607 + MPMX20_03989 0.18 -0.3
4,183,666 + MPMX20_03989 0.24 +0.1
4,183,666 - MPMX20_03989 0.24 -1.4
4,183,676 + MPMX20_03989 0.25 +0.4
4,183,678 + MPMX20_03989 0.25 -2.4
4,183,678 + MPMX20_03989 0.25 +0.3
4,183,686 - MPMX20_03989 0.26 +0.5
4,183,742 - MPMX20_03989 0.31 -0.6
4,183,834 + MPMX20_03989 0.41 +0.8
4,183,845 + MPMX20_03989 0.42 +0.4
4,183,937 + MPMX20_03989 0.51 -0.9
4,183,945 - MPMX20_03989 0.52 +0.2
4,183,963 + MPMX20_03989 0.54 -0.5
4,183,963 + MPMX20_03989 0.54 +0.8
4,183,971 - MPMX20_03989 0.55 +0.5
4,183,971 - MPMX20_03989 0.55 +0.8
4,183,971 - MPMX20_03989 0.55 +0.0
4,183,971 - MPMX20_03989 0.55 -0.1
4,183,971 - MPMX20_03989 0.55 -0.5
4,183,993 - MPMX20_03989 0.57 -0.4
4,183,993 - MPMX20_03989 0.57 -0.2
4,184,024 + MPMX20_03989 0.60 +0.8
4,184,040 + MPMX20_03989 0.62 +0.2
4,184,109 + MPMX20_03989 0.69 -0.9
4,184,117 - MPMX20_03989 0.70 +0.5
4,184,117 - MPMX20_03989 0.70 +0.2
4,184,117 - MPMX20_03989 0.70 -0.5
4,184,202 + MPMX20_03989 0.78 +0.0
4,184,214 + MPMX20_03989 0.79 +0.4
4,184,257 + MPMX20_03989 0.84 +0.0
4,184,257 + MPMX20_03989 0.84 +0.5
4,184,271 - MPMX20_03989 0.85 +0.5
4,184,307 + MPMX20_03989 0.89 +0.3
4,184,307 + MPMX20_03989 0.89 -0.2
4,184,315 - MPMX20_03989 0.90 +0.1
4,184,352 + +1.7
4,184,360 - +0.0
4,184,433 - +1.3

Or see this region's nucleotide sequence