Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03527

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03525 and MPMX20_03526 are separated by 171 nucleotidesMPMX20_03526 and MPMX20_03527 overlap by 29 nucleotidesMPMX20_03527 and MPMX20_03528 are separated by 69 nucleotidesMPMX20_03528 and MPMX20_03529 are separated by 2 nucleotides MPMX20_03525: MPMX20_03525 - Type I secretion system membrane fusion protein PrsE, at 3,721,551 to 3,722,750 _03525 MPMX20_03526: MPMX20_03526 - Nucleoside triphosphatase NudI, at 3,722,922 to 3,723,347 _03526 MPMX20_03527: MPMX20_03527 - HTH-type transcriptional regulator NimR, at 3,723,319 to 3,724,077 _03527 MPMX20_03528: MPMX20_03528 - hypothetical protein, at 3,724,147 to 3,724,566 _03528 MPMX20_03529: MPMX20_03529 - hypothetical protein, at 3,724,569 to 3,725,141 _03529 Position (kb) 3723 3724 3725Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3722.375 kb on + strand, within MPMX20_03525at 3722.383 kb on - strand, within MPMX20_03525at 3722.447 kb on - strand, within MPMX20_03525at 3722.481 kb on + strand, within MPMX20_03525at 3722.528 kb on - strand, within MPMX20_03525at 3722.535 kb on - strand, within MPMX20_03525at 3722.544 kb on + strand, within MPMX20_03525at 3722.544 kb on + strand, within MPMX20_03525at 3722.544 kb on + strand, within MPMX20_03525at 3722.544 kb on + strand, within MPMX20_03525at 3722.568 kb on - strand, within MPMX20_03525at 3722.598 kb on + strand, within MPMX20_03525at 3722.598 kb on + strand, within MPMX20_03525at 3722.598 kb on + strand, within MPMX20_03525at 3722.603 kb on + strand, within MPMX20_03525at 3722.603 kb on + strand, within MPMX20_03525at 3722.606 kb on - strand, within MPMX20_03525at 3722.611 kb on - strand, within MPMX20_03525at 3722.623 kb on - strand, within MPMX20_03525at 3722.641 kb on - strandat 3722.641 kb on - strandat 3722.669 kb on + strandat 3722.677 kb on - strandat 3722.677 kb on - strandat 3722.696 kb on + strandat 3722.722 kb on - strandat 3722.752 kb on - strandat 3722.757 kb on - strandat 3722.790 kb on - strandat 3722.800 kb on - strandat 3722.801 kb on - strandat 3722.820 kb on + strandat 3722.830 kb on + strandat 3722.830 kb on + strandat 3722.830 kb on + strandat 3722.838 kb on - strandat 3722.858 kb on + strandat 3722.866 kb on - strandat 3723.037 kb on + strand, within MPMX20_03526at 3723.045 kb on - strand, within MPMX20_03526at 3723.098 kb on - strand, within MPMX20_03526at 3723.098 kb on - strand, within MPMX20_03526at 3723.105 kb on + strand, within MPMX20_03526at 3723.119 kb on + strand, within MPMX20_03526at 3723.120 kb on + strand, within MPMX20_03526at 3723.125 kb on + strand, within MPMX20_03526at 3723.128 kb on - strand, within MPMX20_03526at 3723.214 kb on + strand, within MPMX20_03526at 3723.258 kb on - strand, within MPMX20_03526at 3723.282 kb on - strand, within MPMX20_03526at 3723.305 kb on - strandat 3723.309 kb on + strandat 3723.419 kb on + strand, within MPMX20_03527at 3723.468 kb on + strand, within MPMX20_03527at 3723.543 kb on + strand, within MPMX20_03527at 3723.580 kb on + strand, within MPMX20_03527at 3723.588 kb on - strand, within MPMX20_03527at 3723.588 kb on - strand, within MPMX20_03527at 3723.588 kb on - strand, within MPMX20_03527at 3723.677 kb on + strand, within MPMX20_03527at 3723.683 kb on - strand, within MPMX20_03527at 3723.702 kb on + strand, within MPMX20_03527at 3723.812 kb on + strand, within MPMX20_03527at 3723.875 kb on + strand, within MPMX20_03527at 3723.890 kb on + strand, within MPMX20_03527at 3723.903 kb on - strand, within MPMX20_03527at 3723.931 kb on + strand, within MPMX20_03527at 3723.931 kb on + strand, within MPMX20_03527at 3724.024 kb on + strandat 3724.032 kb on + strandat 3724.113 kb on + strandat 3724.141 kb on + strandat 3724.144 kb on + strandat 3724.152 kb on - strandat 3724.165 kb on - strandat 3724.166 kb on + strandat 3724.268 kb on + strand, within MPMX20_03528at 3724.278 kb on + strand, within MPMX20_03528at 3724.278 kb on + strand, within MPMX20_03528at 3724.310 kb on + strand, within MPMX20_03528at 3724.330 kb on - strand, within MPMX20_03528at 3724.331 kb on - strand, within MPMX20_03528at 3724.364 kb on + strand, within MPMX20_03528at 3724.372 kb on + strand, within MPMX20_03528at 3724.400 kb on - strand, within MPMX20_03528at 3724.464 kb on - strand, within MPMX20_03528at 3724.464 kb on - strand, within MPMX20_03528at 3724.481 kb on - strand, within MPMX20_03528at 3724.532 kb on - strandat 3724.561 kb on + strandat 3724.569 kb on - strandat 3724.569 kb on - strandat 3724.598 kb on + strandat 3724.604 kb on + strandat 3724.604 kb on + strandat 3724.606 kb on + strandat 3724.612 kb on - strandat 3724.623 kb on - strandat 3724.695 kb on + strand, within MPMX20_03529at 3724.703 kb on - strand, within MPMX20_03529at 3724.766 kb on + strand, within MPMX20_03529at 3724.787 kb on + strand, within MPMX20_03529at 3724.838 kb on + strand, within MPMX20_03529at 3724.838 kb on + strand, within MPMX20_03529at 3724.845 kb on + strand, within MPMX20_03529at 3724.845 kb on + strand, within MPMX20_03529at 3724.845 kb on + strand, within MPMX20_03529at 3724.846 kb on - strand, within MPMX20_03529at 3724.853 kb on - strand, within MPMX20_03529at 3724.884 kb on - strand, within MPMX20_03529at 3724.924 kb on - strand, within MPMX20_03529at 3724.976 kb on + strand, within MPMX20_03529at 3725.000 kb on + strand, within MPMX20_03529at 3725.000 kb on + strand, within MPMX20_03529at 3725.000 kb on + strand, within MPMX20_03529at 3725.008 kb on - strand, within MPMX20_03529

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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3,722,375 + MPMX20_03525 0.69 +0.1
3,722,383 - MPMX20_03525 0.69 -1.0
3,722,447 - MPMX20_03525 0.75 -0.3
3,722,481 + MPMX20_03525 0.78 -0.2
3,722,528 - MPMX20_03525 0.81 +0.5
3,722,535 - MPMX20_03525 0.82 -0.4
3,722,544 + MPMX20_03525 0.83 -1.1
3,722,544 + MPMX20_03525 0.83 -1.7
3,722,544 + MPMX20_03525 0.83 -1.8
3,722,544 + MPMX20_03525 0.83 -1.3
3,722,568 - MPMX20_03525 0.85 -1.3
3,722,598 + MPMX20_03525 0.87 -0.9
3,722,598 + MPMX20_03525 0.87 -1.5
3,722,598 + MPMX20_03525 0.87 -0.6
3,722,603 + MPMX20_03525 0.88 -1.3
3,722,603 + MPMX20_03525 0.88 -1.2
3,722,606 - MPMX20_03525 0.88 -0.9
3,722,611 - MPMX20_03525 0.88 -0.7
3,722,623 - MPMX20_03525 0.89 -1.5
3,722,641 - -1.0
3,722,641 - -0.5
3,722,669 + -1.2
3,722,677 - +0.1
3,722,677 - -0.6
3,722,696 + -0.4
3,722,722 - -1.6
3,722,752 - -0.9
3,722,757 - -0.1
3,722,790 - +0.7
3,722,800 - +0.8
3,722,801 - +1.0
3,722,820 + -2.2
3,722,830 + +1.0
3,722,830 + +1.5
3,722,830 + -0.3
3,722,838 - +0.5
3,722,858 + -1.6
3,722,866 - +1.6
3,723,037 + MPMX20_03526 0.27 +0.2
3,723,045 - MPMX20_03526 0.29 +1.7
3,723,098 - MPMX20_03526 0.41 +3.3
3,723,098 - MPMX20_03526 0.41 -0.0
3,723,105 + MPMX20_03526 0.43 -0.5
3,723,119 + MPMX20_03526 0.46 +1.1
3,723,120 + MPMX20_03526 0.46 -0.5
3,723,125 + MPMX20_03526 0.48 -0.9
3,723,128 - MPMX20_03526 0.48 +1.0
3,723,214 + MPMX20_03526 0.69 +2.9
3,723,258 - MPMX20_03526 0.79 +0.8
3,723,282 - MPMX20_03526 0.85 -0.8
3,723,305 - +1.4
3,723,309 + -1.7
3,723,419 + MPMX20_03527 0.13 -0.1
3,723,468 + MPMX20_03527 0.20 -0.7
3,723,543 + MPMX20_03527 0.30 -1.6
3,723,580 + MPMX20_03527 0.34 +1.1
3,723,588 - MPMX20_03527 0.35 +1.0
3,723,588 - MPMX20_03527 0.35 -1.3
3,723,588 - MPMX20_03527 0.35 +2.0
3,723,677 + MPMX20_03527 0.47 +0.7
3,723,683 - MPMX20_03527 0.48 +0.4
3,723,702 + MPMX20_03527 0.50 -0.1
3,723,812 + MPMX20_03527 0.65 -1.5
3,723,875 + MPMX20_03527 0.73 +1.5
3,723,890 + MPMX20_03527 0.75 -1.1
3,723,903 - MPMX20_03527 0.77 -1.1
3,723,931 + MPMX20_03527 0.81 -0.7
3,723,931 + MPMX20_03527 0.81 +0.2
3,724,024 + +0.9
3,724,032 + -0.8
3,724,113 + -2.0
3,724,141 + +2.6
3,724,144 + -0.8
3,724,152 - +0.3
3,724,165 - +0.7
3,724,166 + -2.0
3,724,268 + MPMX20_03528 0.29 -0.6
3,724,278 + MPMX20_03528 0.31 -0.1
3,724,278 + MPMX20_03528 0.31 +1.3
3,724,310 + MPMX20_03528 0.39 -1.5
3,724,330 - MPMX20_03528 0.44 +1.2
3,724,331 - MPMX20_03528 0.44 +0.1
3,724,364 + MPMX20_03528 0.52 -0.6
3,724,372 + MPMX20_03528 0.54 -0.4
3,724,400 - MPMX20_03528 0.60 +0.2
3,724,464 - MPMX20_03528 0.75 -0.3
3,724,464 - MPMX20_03528 0.75 -1.3
3,724,481 - MPMX20_03528 0.80 +0.6
3,724,532 - -0.4
3,724,561 + -0.3
3,724,569 - -0.8
3,724,569 - +1.1
3,724,598 + +0.2
3,724,604 + +0.4
3,724,604 + +0.7
3,724,606 + -0.6
3,724,612 - +1.4
3,724,623 - +0.4
3,724,695 + MPMX20_03529 0.22 +0.4
3,724,703 - MPMX20_03529 0.23 -0.4
3,724,766 + MPMX20_03529 0.34 -0.1
3,724,787 + MPMX20_03529 0.38 -0.1
3,724,838 + MPMX20_03529 0.47 -0.3
3,724,838 + MPMX20_03529 0.47 -1.1
3,724,845 + MPMX20_03529 0.48 +0.1
3,724,845 + MPMX20_03529 0.48 -0.4
3,724,845 + MPMX20_03529 0.48 -0.2
3,724,846 - MPMX20_03529 0.48 +0.6
3,724,853 - MPMX20_03529 0.50 +0.7
3,724,884 - MPMX20_03529 0.55 +0.5
3,724,924 - MPMX20_03529 0.62 +0.1
3,724,976 + MPMX20_03529 0.71 -0.1
3,725,000 + MPMX20_03529 0.75 +0.2
3,725,000 + MPMX20_03529 0.75 -1.4
3,725,000 + MPMX20_03529 0.75 +0.2
3,725,008 - MPMX20_03529 0.77 -0.2

Or see this region's nucleotide sequence