Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03525 and MPMX20_03526 are separated by 171 nucleotides MPMX20_03526 and MPMX20_03527 overlap by 29 nucleotides MPMX20_03527 and MPMX20_03528 are separated by 69 nucleotides MPMX20_03528 and MPMX20_03529 are separated by 2 nucleotides
MPMX20_03525: MPMX20_03525 - Type I secretion system membrane fusion protein PrsE, at 3,721,551 to 3,722,750
_03525
MPMX20_03526: MPMX20_03526 - Nucleoside triphosphatase NudI, at 3,722,922 to 3,723,347
_03526
MPMX20_03527: MPMX20_03527 - HTH-type transcriptional regulator NimR, at 3,723,319 to 3,724,077
_03527
MPMX20_03528: MPMX20_03528 - hypothetical protein, at 3,724,147 to 3,724,566
_03528
MPMX20_03529: MPMX20_03529 - hypothetical protein, at 3,724,569 to 3,725,141
_03529
Position (kb)
3723
3724
3725 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3722.375 kb on + strand, within MPMX20_03525 at 3722.383 kb on - strand, within MPMX20_03525 at 3722.447 kb on - strand, within MPMX20_03525 at 3722.481 kb on + strand, within MPMX20_03525 at 3722.528 kb on - strand, within MPMX20_03525 at 3722.535 kb on - strand, within MPMX20_03525 at 3722.544 kb on + strand, within MPMX20_03525 at 3722.544 kb on + strand, within MPMX20_03525 at 3722.544 kb on + strand, within MPMX20_03525 at 3722.544 kb on + strand, within MPMX20_03525 at 3722.568 kb on - strand, within MPMX20_03525 at 3722.598 kb on + strand, within MPMX20_03525 at 3722.598 kb on + strand, within MPMX20_03525 at 3722.598 kb on + strand, within MPMX20_03525 at 3722.603 kb on + strand, within MPMX20_03525 at 3722.603 kb on + strand, within MPMX20_03525 at 3722.606 kb on - strand, within MPMX20_03525 at 3722.611 kb on - strand, within MPMX20_03525 at 3722.623 kb on - strand, within MPMX20_03525 at 3722.641 kb on - strand at 3722.641 kb on - strand at 3722.669 kb on + strand at 3722.677 kb on - strand at 3722.677 kb on - strand at 3722.696 kb on + strand at 3722.722 kb on - strand at 3722.752 kb on - strand at 3722.757 kb on - strand at 3722.790 kb on - strand at 3722.800 kb on - strand at 3722.801 kb on - strand at 3722.820 kb on + strand at 3722.830 kb on + strand at 3722.830 kb on + strand at 3722.830 kb on + strand at 3722.838 kb on - strand at 3722.858 kb on + strand at 3722.866 kb on - strand at 3723.037 kb on + strand, within MPMX20_03526 at 3723.045 kb on - strand, within MPMX20_03526 at 3723.098 kb on - strand, within MPMX20_03526 at 3723.098 kb on - strand, within MPMX20_03526 at 3723.105 kb on + strand, within MPMX20_03526 at 3723.119 kb on + strand, within MPMX20_03526 at 3723.120 kb on + strand, within MPMX20_03526 at 3723.125 kb on + strand, within MPMX20_03526 at 3723.128 kb on - strand, within MPMX20_03526 at 3723.214 kb on + strand, within MPMX20_03526 at 3723.258 kb on - strand, within MPMX20_03526 at 3723.282 kb on - strand, within MPMX20_03526 at 3723.305 kb on - strand at 3723.309 kb on + strand at 3723.419 kb on + strand, within MPMX20_03527 at 3723.468 kb on + strand, within MPMX20_03527 at 3723.543 kb on + strand, within MPMX20_03527 at 3723.580 kb on + strand, within MPMX20_03527 at 3723.588 kb on - strand, within MPMX20_03527 at 3723.588 kb on - strand, within MPMX20_03527 at 3723.588 kb on - strand, within MPMX20_03527 at 3723.677 kb on + strand, within MPMX20_03527 at 3723.683 kb on - strand, within MPMX20_03527 at 3723.702 kb on + strand, within MPMX20_03527 at 3723.812 kb on + strand, within MPMX20_03527 at 3723.875 kb on + strand, within MPMX20_03527 at 3723.890 kb on + strand, within MPMX20_03527 at 3723.903 kb on - strand, within MPMX20_03527 at 3723.931 kb on + strand, within MPMX20_03527 at 3723.931 kb on + strand, within MPMX20_03527 at 3724.024 kb on + strand at 3724.032 kb on + strand at 3724.113 kb on + strand at 3724.141 kb on + strand at 3724.144 kb on + strand at 3724.152 kb on - strand at 3724.165 kb on - strand at 3724.166 kb on + strand at 3724.268 kb on + strand, within MPMX20_03528 at 3724.278 kb on + strand, within MPMX20_03528 at 3724.278 kb on + strand, within MPMX20_03528 at 3724.310 kb on + strand, within MPMX20_03528 at 3724.330 kb on - strand, within MPMX20_03528 at 3724.331 kb on - strand, within MPMX20_03528 at 3724.364 kb on + strand, within MPMX20_03528 at 3724.372 kb on + strand, within MPMX20_03528 at 3724.400 kb on - strand, within MPMX20_03528 at 3724.464 kb on - strand, within MPMX20_03528 at 3724.464 kb on - strand, within MPMX20_03528 at 3724.481 kb on - strand, within MPMX20_03528 at 3724.532 kb on - strand at 3724.561 kb on + strand at 3724.569 kb on - strand at 3724.569 kb on - strand at 3724.598 kb on + strand at 3724.604 kb on + strand at 3724.604 kb on + strand at 3724.606 kb on + strand at 3724.612 kb on - strand at 3724.623 kb on - strand at 3724.695 kb on + strand, within MPMX20_03529 at 3724.703 kb on - strand, within MPMX20_03529 at 3724.766 kb on + strand, within MPMX20_03529 at 3724.787 kb on + strand, within MPMX20_03529 at 3724.838 kb on + strand, within MPMX20_03529 at 3724.838 kb on + strand, within MPMX20_03529 at 3724.845 kb on + strand, within MPMX20_03529 at 3724.845 kb on + strand, within MPMX20_03529 at 3724.845 kb on + strand, within MPMX20_03529 at 3724.846 kb on - strand, within MPMX20_03529 at 3724.853 kb on - strand, within MPMX20_03529 at 3724.884 kb on - strand, within MPMX20_03529 at 3724.924 kb on - strand, within MPMX20_03529 at 3724.976 kb on + strand, within MPMX20_03529 at 3725.000 kb on + strand, within MPMX20_03529 at 3725.000 kb on + strand, within MPMX20_03529 at 3725.000 kb on + strand, within MPMX20_03529 at 3725.008 kb on - strand, within MPMX20_03529
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 3,722,375 + MPMX20_03525 0.69 +0.1 3,722,383 - MPMX20_03525 0.69 -1.0 3,722,447 - MPMX20_03525 0.75 -0.3 3,722,481 + MPMX20_03525 0.78 -0.2 3,722,528 - MPMX20_03525 0.81 +0.5 3,722,535 - MPMX20_03525 0.82 -0.4 3,722,544 + MPMX20_03525 0.83 -1.1 3,722,544 + MPMX20_03525 0.83 -1.7 3,722,544 + MPMX20_03525 0.83 -1.8 3,722,544 + MPMX20_03525 0.83 -1.3 3,722,568 - MPMX20_03525 0.85 -1.3 3,722,598 + MPMX20_03525 0.87 -0.9 3,722,598 + MPMX20_03525 0.87 -1.5 3,722,598 + MPMX20_03525 0.87 -0.6 3,722,603 + MPMX20_03525 0.88 -1.3 3,722,603 + MPMX20_03525 0.88 -1.2 3,722,606 - MPMX20_03525 0.88 -0.9 3,722,611 - MPMX20_03525 0.88 -0.7 3,722,623 - MPMX20_03525 0.89 -1.5 3,722,641 - -1.0 3,722,641 - -0.5 3,722,669 + -1.2 3,722,677 - +0.1 3,722,677 - -0.6 3,722,696 + -0.4 3,722,722 - -1.6 3,722,752 - -0.9 3,722,757 - -0.1 3,722,790 - +0.7 3,722,800 - +0.8 3,722,801 - +1.0 3,722,820 + -2.2 3,722,830 + +1.0 3,722,830 + +1.5 3,722,830 + -0.3 3,722,838 - +0.5 3,722,858 + -1.6 3,722,866 - +1.6 3,723,037 + MPMX20_03526 0.27 +0.2 3,723,045 - MPMX20_03526 0.29 +1.7 3,723,098 - MPMX20_03526 0.41 +3.3 3,723,098 - MPMX20_03526 0.41 -0.0 3,723,105 + MPMX20_03526 0.43 -0.5 3,723,119 + MPMX20_03526 0.46 +1.1 3,723,120 + MPMX20_03526 0.46 -0.5 3,723,125 + MPMX20_03526 0.48 -0.9 3,723,128 - MPMX20_03526 0.48 +1.0 3,723,214 + MPMX20_03526 0.69 +2.9 3,723,258 - MPMX20_03526 0.79 +0.8 3,723,282 - MPMX20_03526 0.85 -0.8 3,723,305 - +1.4 3,723,309 + -1.7 3,723,419 + MPMX20_03527 0.13 -0.1 3,723,468 + MPMX20_03527 0.20 -0.7 3,723,543 + MPMX20_03527 0.30 -1.6 3,723,580 + MPMX20_03527 0.34 +1.1 3,723,588 - MPMX20_03527 0.35 +1.0 3,723,588 - MPMX20_03527 0.35 -1.3 3,723,588 - MPMX20_03527 0.35 +2.0 3,723,677 + MPMX20_03527 0.47 +0.7 3,723,683 - MPMX20_03527 0.48 +0.4 3,723,702 + MPMX20_03527 0.50 -0.1 3,723,812 + MPMX20_03527 0.65 -1.5 3,723,875 + MPMX20_03527 0.73 +1.5 3,723,890 + MPMX20_03527 0.75 -1.1 3,723,903 - MPMX20_03527 0.77 -1.1 3,723,931 + MPMX20_03527 0.81 -0.7 3,723,931 + MPMX20_03527 0.81 +0.2 3,724,024 + +0.9 3,724,032 + -0.8 3,724,113 + -2.0 3,724,141 + +2.6 3,724,144 + -0.8 3,724,152 - +0.3 3,724,165 - +0.7 3,724,166 + -2.0 3,724,268 + MPMX20_03528 0.29 -0.6 3,724,278 + MPMX20_03528 0.31 -0.1 3,724,278 + MPMX20_03528 0.31 +1.3 3,724,310 + MPMX20_03528 0.39 -1.5 3,724,330 - MPMX20_03528 0.44 +1.2 3,724,331 - MPMX20_03528 0.44 +0.1 3,724,364 + MPMX20_03528 0.52 -0.6 3,724,372 + MPMX20_03528 0.54 -0.4 3,724,400 - MPMX20_03528 0.60 +0.2 3,724,464 - MPMX20_03528 0.75 -0.3 3,724,464 - MPMX20_03528 0.75 -1.3 3,724,481 - MPMX20_03528 0.80 +0.6 3,724,532 - -0.4 3,724,561 + -0.3 3,724,569 - -0.8 3,724,569 - +1.1 3,724,598 + +0.2 3,724,604 + +0.4 3,724,604 + +0.7 3,724,606 + -0.6 3,724,612 - +1.4 3,724,623 - +0.4 3,724,695 + MPMX20_03529 0.22 +0.4 3,724,703 - MPMX20_03529 0.23 -0.4 3,724,766 + MPMX20_03529 0.34 -0.1 3,724,787 + MPMX20_03529 0.38 -0.1 3,724,838 + MPMX20_03529 0.47 -0.3 3,724,838 + MPMX20_03529 0.47 -1.1 3,724,845 + MPMX20_03529 0.48 +0.1 3,724,845 + MPMX20_03529 0.48 -0.4 3,724,845 + MPMX20_03529 0.48 -0.2 3,724,846 - MPMX20_03529 0.48 +0.6 3,724,853 - MPMX20_03529 0.50 +0.7 3,724,884 - MPMX20_03529 0.55 +0.5 3,724,924 - MPMX20_03529 0.62 +0.1 3,724,976 + MPMX20_03529 0.71 -0.1 3,725,000 + MPMX20_03529 0.75 +0.2 3,725,000 + MPMX20_03529 0.75 -1.4 3,725,000 + MPMX20_03529 0.75 +0.2 3,725,008 - MPMX20_03529 0.77 -0.2
Or see this region's nucleotide sequence