Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03415

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03413 and MPMX20_03414 are separated by 16 nucleotidesMPMX20_03414 and MPMX20_03415 are separated by 52 nucleotidesMPMX20_03415 and MPMX20_03416 overlap by 10 nucleotidesMPMX20_03416 and MPMX20_03417 are separated by 125 nucleotides MPMX20_03413: MPMX20_03413 - tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ, at 3,598,168 to 3,599,010 _03413 MPMX20_03414: MPMX20_03414 - Inositol-1-monophosphatase, at 3,599,027 to 3,599,830 _03414 MPMX20_03415: MPMX20_03415 - hypothetical protein, at 3,599,883 to 3,600,863 _03415 MPMX20_03416: MPMX20_03416 - hypothetical protein, at 3,600,854 to 3,601,492 _03416 MPMX20_03417: MPMX20_03417 - hypothetical protein, at 3,601,618 to 3,602,895 _03417 Position (kb) 3599 3600 3601Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3598.898 kb on + strand, within MPMX20_03413at 3598.975 kb on + strandat 3598.975 kb on + strandat 3598.975 kb on + strandat 3598.975 kb on + strandat 3598.975 kb on + strandat 3598.975 kb on + strandat 3598.975 kb on + strandat 3598.975 kb on + strandat 3598.975 kb on + strandat 3598.983 kb on - strandat 3598.983 kb on - strandat 3598.983 kb on - strandat 3598.983 kb on - strandat 3598.983 kb on - strandat 3598.983 kb on - strandat 3598.983 kb on - strandat 3598.983 kb on - strandat 3598.983 kb on - strandat 3598.983 kb on - strandat 3598.983 kb on - strandat 3598.983 kb on - strandat 3599.824 kb on + strandat 3599.889 kb on - strandat 3599.891 kb on + strandat 3600.049 kb on + strand, within MPMX20_03415at 3600.109 kb on + strand, within MPMX20_03415at 3600.136 kb on + strand, within MPMX20_03415at 3600.144 kb on - strand, within MPMX20_03415at 3600.192 kb on - strand, within MPMX20_03415at 3600.237 kb on + strand, within MPMX20_03415at 3600.321 kb on - strand, within MPMX20_03415at 3600.405 kb on + strand, within MPMX20_03415at 3600.408 kb on - strand, within MPMX20_03415at 3600.480 kb on - strand, within MPMX20_03415at 3600.593 kb on + strand, within MPMX20_03415at 3600.601 kb on - strand, within MPMX20_03415at 3600.601 kb on - strand, within MPMX20_03415at 3600.641 kb on + strand, within MPMX20_03415at 3600.704 kb on - strand, within MPMX20_03415at 3600.815 kb on + strandat 3600.889 kb on + strandat 3600.940 kb on + strand, within MPMX20_03416at 3600.967 kb on + strand, within MPMX20_03416at 3600.975 kb on - strand, within MPMX20_03416at 3600.975 kb on - strand, within MPMX20_03416at 3601.019 kb on + strand, within MPMX20_03416at 3601.026 kb on + strand, within MPMX20_03416at 3601.033 kb on + strand, within MPMX20_03416at 3601.033 kb on + strand, within MPMX20_03416at 3601.033 kb on + strand, within MPMX20_03416at 3601.036 kb on - strand, within MPMX20_03416at 3601.041 kb on - strand, within MPMX20_03416at 3601.041 kb on - strand, within MPMX20_03416at 3601.046 kb on - strand, within MPMX20_03416at 3601.088 kb on + strand, within MPMX20_03416at 3601.088 kb on + strand, within MPMX20_03416at 3601.091 kb on - strand, within MPMX20_03416at 3601.133 kb on + strand, within MPMX20_03416at 3601.133 kb on + strand, within MPMX20_03416at 3601.133 kb on + strand, within MPMX20_03416at 3601.141 kb on - strand, within MPMX20_03416at 3601.141 kb on - strand, within MPMX20_03416at 3601.142 kb on + strand, within MPMX20_03416at 3601.301 kb on + strand, within MPMX20_03416at 3601.384 kb on + strand, within MPMX20_03416at 3601.426 kb on - strand, within MPMX20_03416at 3601.450 kb on - strandat 3601.475 kb on + strandat 3601.477 kb on + strandat 3601.483 kb on - strandat 3601.615 kb on - strandat 3601.617 kb on + strandat 3601.625 kb on - strandat 3601.727 kb on - strandat 3601.748 kb on + strand, within MPMX20_03417at 3601.751 kb on + strand, within MPMX20_03417at 3601.766 kb on + strand, within MPMX20_03417at 3601.841 kb on + strand, within MPMX20_03417at 3601.855 kb on + strand, within MPMX20_03417at 3601.858 kb on - strand, within MPMX20_03417

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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3,598,898 + MPMX20_03413 0.87 -0.1
3,598,975 + -0.0
3,598,975 + -0.8
3,598,975 + +1.7
3,598,975 + +0.4
3,598,975 + -0.7
3,598,975 + -2.4
3,598,975 + -0.9
3,598,975 + +1.3
3,598,975 + -0.9
3,598,983 - +0.7
3,598,983 - +0.9
3,598,983 - +0.9
3,598,983 - +0.2
3,598,983 - -0.2
3,598,983 - +1.6
3,598,983 - +0.1
3,598,983 - +0.5
3,598,983 - +0.9
3,598,983 - -0.2
3,598,983 - -1.9
3,598,983 - +1.3
3,599,824 + +0.0
3,599,889 - -0.0
3,599,891 + +0.3
3,600,049 + MPMX20_03415 0.17 +1.2
3,600,109 + MPMX20_03415 0.23 -2.6
3,600,136 + MPMX20_03415 0.26 -1.1
3,600,144 - MPMX20_03415 0.27 -0.0
3,600,192 - MPMX20_03415 0.31 +0.4
3,600,237 + MPMX20_03415 0.36 +1.0
3,600,321 - MPMX20_03415 0.45 +0.8
3,600,405 + MPMX20_03415 0.53 +1.0
3,600,408 - MPMX20_03415 0.54 -0.7
3,600,480 - MPMX20_03415 0.61 +1.0
3,600,593 + MPMX20_03415 0.72 +0.7
3,600,601 - MPMX20_03415 0.73 -1.1
3,600,601 - MPMX20_03415 0.73 +0.0
3,600,641 + MPMX20_03415 0.77 +1.2
3,600,704 - MPMX20_03415 0.84 +1.1
3,600,815 + +0.3
3,600,889 + +0.2
3,600,940 + MPMX20_03416 0.13 +0.3
3,600,967 + MPMX20_03416 0.18 +1.5
3,600,975 - MPMX20_03416 0.19 +0.5
3,600,975 - MPMX20_03416 0.19 +1.5
3,601,019 + MPMX20_03416 0.26 +0.4
3,601,026 + MPMX20_03416 0.27 +1.1
3,601,033 + MPMX20_03416 0.28 +0.0
3,601,033 + MPMX20_03416 0.28 +0.0
3,601,033 + MPMX20_03416 0.28 -0.1
3,601,036 - MPMX20_03416 0.28 -0.2
3,601,041 - MPMX20_03416 0.29 -0.4
3,601,041 - MPMX20_03416 0.29 +0.5
3,601,046 - MPMX20_03416 0.30 +0.5
3,601,088 + MPMX20_03416 0.37 +0.5
3,601,088 + MPMX20_03416 0.37 +0.6
3,601,091 - MPMX20_03416 0.37 -0.0
3,601,133 + MPMX20_03416 0.44 -1.8
3,601,133 + MPMX20_03416 0.44 -0.1
3,601,133 + MPMX20_03416 0.44 +0.2
3,601,141 - MPMX20_03416 0.45 -0.3
3,601,141 - MPMX20_03416 0.45 -0.5
3,601,142 + MPMX20_03416 0.45 +1.1
3,601,301 + MPMX20_03416 0.70 +0.1
3,601,384 + MPMX20_03416 0.83 +0.2
3,601,426 - MPMX20_03416 0.90 -0.1
3,601,450 - -2.0
3,601,475 + +0.3
3,601,477 + -0.8
3,601,483 - -0.5
3,601,615 - +1.3
3,601,617 + +0.2
3,601,625 - -0.3
3,601,727 - +2.3
3,601,748 + MPMX20_03417 0.10 +3.4
3,601,751 + MPMX20_03417 0.10 +0.9
3,601,766 + MPMX20_03417 0.12 +1.5
3,601,841 + MPMX20_03417 0.17 +1.5
3,601,855 + MPMX20_03417 0.19 +1.1
3,601,858 - MPMX20_03417 0.19 +1.1

Or see this region's nucleotide sequence