Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03413 and MPMX20_03414 are separated by 16 nucleotides MPMX20_03414 and MPMX20_03415 are separated by 52 nucleotides MPMX20_03415 and MPMX20_03416 overlap by 10 nucleotides MPMX20_03416 and MPMX20_03417 are separated by 125 nucleotides
MPMX20_03413: MPMX20_03413 - tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ, at 3,598,168 to 3,599,010
_03413
MPMX20_03414: MPMX20_03414 - Inositol-1-monophosphatase, at 3,599,027 to 3,599,830
_03414
MPMX20_03415: MPMX20_03415 - hypothetical protein, at 3,599,883 to 3,600,863
_03415
MPMX20_03416: MPMX20_03416 - hypothetical protein, at 3,600,854 to 3,601,492
_03416
MPMX20_03417: MPMX20_03417 - hypothetical protein, at 3,601,618 to 3,602,895
_03417
Position (kb)
3599
3600
3601 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3598.898 kb on + strand, within MPMX20_03413 at 3598.975 kb on + strand at 3598.975 kb on + strand at 3598.975 kb on + strand at 3598.975 kb on + strand at 3598.975 kb on + strand at 3598.975 kb on + strand at 3598.975 kb on + strand at 3598.975 kb on + strand at 3598.975 kb on + strand at 3598.983 kb on - strand at 3598.983 kb on - strand at 3598.983 kb on - strand at 3598.983 kb on - strand at 3598.983 kb on - strand at 3598.983 kb on - strand at 3598.983 kb on - strand at 3598.983 kb on - strand at 3598.983 kb on - strand at 3598.983 kb on - strand at 3598.983 kb on - strand at 3598.983 kb on - strand at 3599.824 kb on + strand at 3599.889 kb on - strand at 3599.891 kb on + strand at 3600.049 kb on + strand, within MPMX20_03415 at 3600.109 kb on + strand, within MPMX20_03415 at 3600.136 kb on + strand, within MPMX20_03415 at 3600.144 kb on - strand, within MPMX20_03415 at 3600.192 kb on - strand, within MPMX20_03415 at 3600.237 kb on + strand, within MPMX20_03415 at 3600.321 kb on - strand, within MPMX20_03415 at 3600.405 kb on + strand, within MPMX20_03415 at 3600.408 kb on - strand, within MPMX20_03415 at 3600.480 kb on - strand, within MPMX20_03415 at 3600.593 kb on + strand, within MPMX20_03415 at 3600.601 kb on - strand, within MPMX20_03415 at 3600.601 kb on - strand, within MPMX20_03415 at 3600.641 kb on + strand, within MPMX20_03415 at 3600.704 kb on - strand, within MPMX20_03415 at 3600.815 kb on + strand at 3600.889 kb on + strand at 3600.940 kb on + strand, within MPMX20_03416 at 3600.967 kb on + strand, within MPMX20_03416 at 3600.975 kb on - strand, within MPMX20_03416 at 3600.975 kb on - strand, within MPMX20_03416 at 3601.019 kb on + strand, within MPMX20_03416 at 3601.026 kb on + strand, within MPMX20_03416 at 3601.033 kb on + strand, within MPMX20_03416 at 3601.033 kb on + strand, within MPMX20_03416 at 3601.033 kb on + strand, within MPMX20_03416 at 3601.036 kb on - strand, within MPMX20_03416 at 3601.041 kb on - strand, within MPMX20_03416 at 3601.041 kb on - strand, within MPMX20_03416 at 3601.046 kb on - strand, within MPMX20_03416 at 3601.088 kb on + strand, within MPMX20_03416 at 3601.088 kb on + strand, within MPMX20_03416 at 3601.091 kb on - strand, within MPMX20_03416 at 3601.133 kb on + strand, within MPMX20_03416 at 3601.133 kb on + strand, within MPMX20_03416 at 3601.133 kb on + strand, within MPMX20_03416 at 3601.141 kb on - strand, within MPMX20_03416 at 3601.141 kb on - strand, within MPMX20_03416 at 3601.142 kb on + strand, within MPMX20_03416 at 3601.301 kb on + strand, within MPMX20_03416 at 3601.384 kb on + strand, within MPMX20_03416 at 3601.426 kb on - strand, within MPMX20_03416 at 3601.450 kb on - strand at 3601.475 kb on + strand at 3601.477 kb on + strand at 3601.483 kb on - strand at 3601.615 kb on - strand at 3601.617 kb on + strand at 3601.625 kb on - strand at 3601.727 kb on - strand at 3601.748 kb on + strand, within MPMX20_03417 at 3601.751 kb on + strand, within MPMX20_03417 at 3601.766 kb on + strand, within MPMX20_03417 at 3601.841 kb on + strand, within MPMX20_03417 at 3601.855 kb on + strand, within MPMX20_03417 at 3601.858 kb on - strand, within MPMX20_03417
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 3,598,898 + MPMX20_03413 0.87 -0.1 3,598,975 + -0.0 3,598,975 + -0.8 3,598,975 + +1.7 3,598,975 + +0.4 3,598,975 + -0.7 3,598,975 + -2.4 3,598,975 + -0.9 3,598,975 + +1.3 3,598,975 + -0.9 3,598,983 - +0.7 3,598,983 - +0.9 3,598,983 - +0.9 3,598,983 - +0.2 3,598,983 - -0.2 3,598,983 - +1.6 3,598,983 - +0.1 3,598,983 - +0.5 3,598,983 - +0.9 3,598,983 - -0.2 3,598,983 - -1.9 3,598,983 - +1.3 3,599,824 + +0.0 3,599,889 - -0.0 3,599,891 + +0.3 3,600,049 + MPMX20_03415 0.17 +1.2 3,600,109 + MPMX20_03415 0.23 -2.6 3,600,136 + MPMX20_03415 0.26 -1.1 3,600,144 - MPMX20_03415 0.27 -0.0 3,600,192 - MPMX20_03415 0.31 +0.4 3,600,237 + MPMX20_03415 0.36 +1.0 3,600,321 - MPMX20_03415 0.45 +0.8 3,600,405 + MPMX20_03415 0.53 +1.0 3,600,408 - MPMX20_03415 0.54 -0.7 3,600,480 - MPMX20_03415 0.61 +1.0 3,600,593 + MPMX20_03415 0.72 +0.7 3,600,601 - MPMX20_03415 0.73 -1.1 3,600,601 - MPMX20_03415 0.73 +0.0 3,600,641 + MPMX20_03415 0.77 +1.2 3,600,704 - MPMX20_03415 0.84 +1.1 3,600,815 + +0.3 3,600,889 + +0.2 3,600,940 + MPMX20_03416 0.13 +0.3 3,600,967 + MPMX20_03416 0.18 +1.5 3,600,975 - MPMX20_03416 0.19 +0.5 3,600,975 - MPMX20_03416 0.19 +1.5 3,601,019 + MPMX20_03416 0.26 +0.4 3,601,026 + MPMX20_03416 0.27 +1.1 3,601,033 + MPMX20_03416 0.28 +0.0 3,601,033 + MPMX20_03416 0.28 +0.0 3,601,033 + MPMX20_03416 0.28 -0.1 3,601,036 - MPMX20_03416 0.28 -0.2 3,601,041 - MPMX20_03416 0.29 -0.4 3,601,041 - MPMX20_03416 0.29 +0.5 3,601,046 - MPMX20_03416 0.30 +0.5 3,601,088 + MPMX20_03416 0.37 +0.5 3,601,088 + MPMX20_03416 0.37 +0.6 3,601,091 - MPMX20_03416 0.37 -0.0 3,601,133 + MPMX20_03416 0.44 -1.8 3,601,133 + MPMX20_03416 0.44 -0.1 3,601,133 + MPMX20_03416 0.44 +0.2 3,601,141 - MPMX20_03416 0.45 -0.3 3,601,141 - MPMX20_03416 0.45 -0.5 3,601,142 + MPMX20_03416 0.45 +1.1 3,601,301 + MPMX20_03416 0.70 +0.1 3,601,384 + MPMX20_03416 0.83 +0.2 3,601,426 - MPMX20_03416 0.90 -0.1 3,601,450 - -2.0 3,601,475 + +0.3 3,601,477 + -0.8 3,601,483 - -0.5 3,601,615 - +1.3 3,601,617 + +0.2 3,601,625 - -0.3 3,601,727 - +2.3 3,601,748 + MPMX20_03417 0.10 +3.4 3,601,751 + MPMX20_03417 0.10 +0.9 3,601,766 + MPMX20_03417 0.12 +1.5 3,601,841 + MPMX20_03417 0.17 +1.5 3,601,855 + MPMX20_03417 0.19 +1.1 3,601,858 - MPMX20_03417 0.19 +1.1
Or see this region's nucleotide sequence