Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02438 and MPMX20_02439 are separated by 144 nucleotides MPMX20_02439 and MPMX20_02440 are separated by 348 nucleotides MPMX20_02440 and MPMX20_02441 are separated by 50 nucleotides
MPMX20_02438: MPMX20_02438 - hypothetical protein, at 2,575,039 to 2,575,488
_02438
MPMX20_02439: MPMX20_02439 - hypothetical protein, at 2,575,633 to 2,575,977
_02439
MPMX20_02440: MPMX20_02440 - tRNA-cytidine(32) 2-sulfurtransferase, at 2,576,326 to 2,577,261
_02440
MPMX20_02441: MPMX20_02441 - ATP-dependent RNA helicase DbpA, at 2,577,312 to 2,578,685
_02441
Position (kb)
2576
2577
2578 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2575.328 kb on + strand, within MPMX20_02438 at 2575.330 kb on - strand, within MPMX20_02438 at 2575.330 kb on - strand, within MPMX20_02438 at 2575.330 kb on - strand, within MPMX20_02438 at 2575.330 kb on - strand, within MPMX20_02438 at 2575.330 kb on - strand, within MPMX20_02438 at 2575.330 kb on - strand, within MPMX20_02438 at 2575.330 kb on - strand, within MPMX20_02438 at 2575.330 kb on - strand, within MPMX20_02438 at 2575.353 kb on + strand, within MPMX20_02438 at 2575.365 kb on + strand, within MPMX20_02438 at 2575.457 kb on + strand at 2575.502 kb on - strand at 2575.502 kb on - strand at 2575.556 kb on - strand at 2575.594 kb on + strand at 2575.594 kb on + strand at 2575.602 kb on - strand at 2575.602 kb on - strand at 2575.602 kb on - strand at 2575.602 kb on - strand at 2575.640 kb on - strand at 2575.647 kb on - strand at 2575.647 kb on - strand at 2575.655 kb on + strand at 2575.656 kb on - strand at 2575.657 kb on - strand at 2575.672 kb on - strand, within MPMX20_02439 at 2575.755 kb on + strand, within MPMX20_02439 at 2575.765 kb on - strand, within MPMX20_02439 at 2575.855 kb on + strand, within MPMX20_02439 at 2575.861 kb on - strand, within MPMX20_02439 at 2575.863 kb on + strand, within MPMX20_02439 at 2575.870 kb on + strand, within MPMX20_02439 at 2575.871 kb on - strand, within MPMX20_02439 at 2575.878 kb on - strand, within MPMX20_02439 at 2575.899 kb on + strand, within MPMX20_02439 at 2575.899 kb on + strand, within MPMX20_02439 at 2575.937 kb on + strand, within MPMX20_02439 at 2575.945 kb on - strand at 2575.972 kb on + strand at 2575.979 kb on + strand at 2575.980 kb on - strand at 2575.987 kb on - strand at 2575.987 kb on - strand at 2575.992 kb on - strand at 2576.004 kb on - strand at 2576.004 kb on - strand at 2576.014 kb on - strand at 2576.031 kb on + strand at 2576.049 kb on + strand at 2576.059 kb on + strand at 2576.141 kb on - strand at 2576.143 kb on - strand at 2576.230 kb on + strand at 2576.244 kb on + strand at 2576.272 kb on + strand at 2576.272 kb on + strand at 2576.280 kb on - strand at 2576.280 kb on - strand at 2576.280 kb on - strand at 2576.280 kb on - strand at 2576.287 kb on + strand at 2576.295 kb on - strand at 2576.295 kb on - strand at 2576.377 kb on + strand at 2576.377 kb on + strand at 2576.385 kb on - strand at 2576.385 kb on - strand at 2576.385 kb on - strand at 2576.386 kb on + strand at 2576.404 kb on + strand at 2576.486 kb on - strand, within MPMX20_02440 at 2576.486 kb on - strand, within MPMX20_02440 at 2576.486 kb on - strand, within MPMX20_02440 at 2576.488 kb on + strand, within MPMX20_02440 at 2576.496 kb on - strand, within MPMX20_02440 at 2576.515 kb on - strand, within MPMX20_02440 at 2576.541 kb on + strand, within MPMX20_02440 at 2576.699 kb on + strand, within MPMX20_02440 at 2576.699 kb on + strand, within MPMX20_02440 at 2576.699 kb on + strand, within MPMX20_02440 at 2576.704 kb on + strand, within MPMX20_02440 at 2576.743 kb on - strand, within MPMX20_02440 at 2576.826 kb on + strand, within MPMX20_02440 at 2576.834 kb on - strand, within MPMX20_02440 at 2576.879 kb on - strand, within MPMX20_02440 at 2576.928 kb on + strand, within MPMX20_02440 at 2576.928 kb on + strand, within MPMX20_02440 at 2576.936 kb on - strand, within MPMX20_02440 at 2576.936 kb on - strand, within MPMX20_02440 at 2576.951 kb on + strand, within MPMX20_02440 at 2576.951 kb on + strand, within MPMX20_02440 at 2577.051 kb on + strand, within MPMX20_02440 at 2577.230 kb on - strand at 2577.288 kb on - strand at 2577.293 kb on + strand at 2577.423 kb on - strand at 2577.427 kb on + strand at 2577.435 kb on - strand at 2577.531 kb on - strand, within MPMX20_02441 at 2577.575 kb on - strand, within MPMX20_02441 at 2577.595 kb on + strand, within MPMX20_02441 at 2577.595 kb on + strand, within MPMX20_02441 at 2577.689 kb on + strand, within MPMX20_02441 at 2577.710 kb on + strand, within MPMX20_02441 at 2577.760 kb on - strand, within MPMX20_02441 at 2577.885 kb on + strand, within MPMX20_02441 at 2577.890 kb on + strand, within MPMX20_02441 at 2577.890 kb on + strand, within MPMX20_02441 at 2577.890 kb on + strand, within MPMX20_02441 at 2577.890 kb on + strand, within MPMX20_02441 at 2577.891 kb on - strand, within MPMX20_02441 at 2577.893 kb on - strand, within MPMX20_02441 at 2577.898 kb on - strand, within MPMX20_02441 at 2577.898 kb on - strand, within MPMX20_02441 at 2577.915 kb on - strand, within MPMX20_02441 at 2577.968 kb on + strand, within MPMX20_02441 at 2577.972 kb on - strand, within MPMX20_02441 at 2578.060 kb on - strand, within MPMX20_02441 at 2578.118 kb on + strand, within MPMX20_02441 at 2578.118 kb on + strand, within MPMX20_02441 at 2578.123 kb on + strand, within MPMX20_02441 at 2578.126 kb on - strand, within MPMX20_02441 at 2578.126 kb on - strand, within MPMX20_02441 at 2578.209 kb on - strand, within MPMX20_02441 at 2578.228 kb on + strand, within MPMX20_02441 at 2578.236 kb on - strand, within MPMX20_02441
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 2,575,328 + MPMX20_02438 0.64 -2.2 2,575,330 - MPMX20_02438 0.65 -0.2 2,575,330 - MPMX20_02438 0.65 +1.1 2,575,330 - MPMX20_02438 0.65 -0.3 2,575,330 - MPMX20_02438 0.65 -1.2 2,575,330 - MPMX20_02438 0.65 +0.4 2,575,330 - MPMX20_02438 0.65 +2.1 2,575,330 - MPMX20_02438 0.65 +0.5 2,575,330 - MPMX20_02438 0.65 +0.5 2,575,353 + MPMX20_02438 0.70 +0.1 2,575,365 + MPMX20_02438 0.72 +0.1 2,575,457 + -1.0 2,575,502 - +0.7 2,575,502 - -1.5 2,575,556 - +2.1 2,575,594 + +0.1 2,575,594 + +1.4 2,575,602 - -0.4 2,575,602 - -2.7 2,575,602 - +0.2 2,575,602 - -0.4 2,575,640 - +1.1 2,575,647 - +1.9 2,575,647 - -2.2 2,575,655 + +0.5 2,575,656 - +0.3 2,575,657 - +0.7 2,575,672 - MPMX20_02439 0.11 +1.7 2,575,755 + MPMX20_02439 0.35 -0.4 2,575,765 - MPMX20_02439 0.38 +0.3 2,575,855 + MPMX20_02439 0.64 +0.1 2,575,861 - MPMX20_02439 0.66 +0.0 2,575,863 + MPMX20_02439 0.67 -1.0 2,575,870 + MPMX20_02439 0.69 -0.2 2,575,871 - MPMX20_02439 0.69 +0.1 2,575,878 - MPMX20_02439 0.71 -0.5 2,575,899 + MPMX20_02439 0.77 +0.0 2,575,899 + MPMX20_02439 0.77 -0.7 2,575,937 + MPMX20_02439 0.88 +0.2 2,575,945 - +0.0 2,575,972 + -0.5 2,575,979 + +0.4 2,575,980 - -0.5 2,575,987 - -0.0 2,575,987 - +0.8 2,575,992 - +1.4 2,576,004 - +0.7 2,576,004 - -0.5 2,576,014 - +0.7 2,576,031 + -0.2 2,576,049 + +0.2 2,576,059 + -1.2 2,576,141 - -1.5 2,576,143 - -0.6 2,576,230 + +0.1 2,576,244 + -0.0 2,576,272 + +0.6 2,576,272 + +0.2 2,576,280 - +0.2 2,576,280 - -1.3 2,576,280 - +1.1 2,576,280 - -1.1 2,576,287 + -0.9 2,576,295 - +0.4 2,576,295 - +1.5 2,576,377 + +0.5 2,576,377 + +0.3 2,576,385 - +0.6 2,576,385 - +0.6 2,576,385 - +0.1 2,576,386 + +0.5 2,576,404 + -1.3 2,576,486 - MPMX20_02440 0.17 +0.7 2,576,486 - MPMX20_02440 0.17 -0.4 2,576,486 - MPMX20_02440 0.17 -0.3 2,576,488 + MPMX20_02440 0.17 +3.5 2,576,496 - MPMX20_02440 0.18 -0.3 2,576,515 - MPMX20_02440 0.20 -0.4 2,576,541 + MPMX20_02440 0.23 +0.4 2,576,699 + MPMX20_02440 0.40 -0.2 2,576,699 + MPMX20_02440 0.40 +1.3 2,576,699 + MPMX20_02440 0.40 -0.5 2,576,704 + MPMX20_02440 0.40 -0.7 2,576,743 - MPMX20_02440 0.45 -0.5 2,576,826 + MPMX20_02440 0.53 +0.3 2,576,834 - MPMX20_02440 0.54 +0.2 2,576,879 - MPMX20_02440 0.59 +1.1 2,576,928 + MPMX20_02440 0.64 +0.6 2,576,928 + MPMX20_02440 0.64 -0.2 2,576,936 - MPMX20_02440 0.65 -0.9 2,576,936 - MPMX20_02440 0.65 -0.4 2,576,951 + MPMX20_02440 0.67 -0.1 2,576,951 + MPMX20_02440 0.67 +0.4 2,577,051 + MPMX20_02440 0.77 +1.0 2,577,230 - +0.1 2,577,288 - +0.5 2,577,293 + -1.7 2,577,423 - -1.5 2,577,427 + +0.4 2,577,435 - +1.0 2,577,531 - MPMX20_02441 0.16 +1.1 2,577,575 - MPMX20_02441 0.19 -0.1 2,577,595 + MPMX20_02441 0.21 -2.7 2,577,595 + MPMX20_02441 0.21 -0.2 2,577,689 + MPMX20_02441 0.27 +0.7 2,577,710 + MPMX20_02441 0.29 -0.3 2,577,760 - MPMX20_02441 0.33 -1.2 2,577,885 + MPMX20_02441 0.42 +0.2 2,577,890 + MPMX20_02441 0.42 -0.0 2,577,890 + MPMX20_02441 0.42 -0.7 2,577,890 + MPMX20_02441 0.42 +0.1 2,577,890 + MPMX20_02441 0.42 +0.2 2,577,891 - MPMX20_02441 0.42 +0.3 2,577,893 - MPMX20_02441 0.42 +1.1 2,577,898 - MPMX20_02441 0.43 +0.1 2,577,898 - MPMX20_02441 0.43 +1.5 2,577,915 - MPMX20_02441 0.44 -0.6 2,577,968 + MPMX20_02441 0.48 +1.1 2,577,972 - MPMX20_02441 0.48 +0.2 2,578,060 - MPMX20_02441 0.54 -2.0 2,578,118 + MPMX20_02441 0.59 +0.4 2,578,118 + MPMX20_02441 0.59 -0.9 2,578,123 + MPMX20_02441 0.59 -0.2 2,578,126 - MPMX20_02441 0.59 +0.1 2,578,126 - MPMX20_02441 0.59 +0.5 2,578,209 - MPMX20_02441 0.65 -0.1 2,578,228 + MPMX20_02441 0.67 +0.8 2,578,236 - MPMX20_02441 0.67 +1.1
Or see this region's nucleotide sequence