Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02440

Experiment: L-Proline (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_02438 and MPMX20_02439 are separated by 144 nucleotidesMPMX20_02439 and MPMX20_02440 are separated by 348 nucleotidesMPMX20_02440 and MPMX20_02441 are separated by 50 nucleotides MPMX20_02438: MPMX20_02438 - hypothetical protein, at 2,575,039 to 2,575,488 _02438 MPMX20_02439: MPMX20_02439 - hypothetical protein, at 2,575,633 to 2,575,977 _02439 MPMX20_02440: MPMX20_02440 - tRNA-cytidine(32) 2-sulfurtransferase, at 2,576,326 to 2,577,261 _02440 MPMX20_02441: MPMX20_02441 - ATP-dependent RNA helicase DbpA, at 2,577,312 to 2,578,685 _02441 Position (kb) 2576 2577 2578Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2575.328 kb on + strand, within MPMX20_02438at 2575.330 kb on - strand, within MPMX20_02438at 2575.330 kb on - strand, within MPMX20_02438at 2575.330 kb on - strand, within MPMX20_02438at 2575.330 kb on - strand, within MPMX20_02438at 2575.330 kb on - strand, within MPMX20_02438at 2575.330 kb on - strand, within MPMX20_02438at 2575.330 kb on - strand, within MPMX20_02438at 2575.330 kb on - strand, within MPMX20_02438at 2575.353 kb on + strand, within MPMX20_02438at 2575.365 kb on + strand, within MPMX20_02438at 2575.457 kb on + strandat 2575.502 kb on - strandat 2575.502 kb on - strandat 2575.556 kb on - strandat 2575.594 kb on + strandat 2575.594 kb on + strandat 2575.602 kb on - strandat 2575.602 kb on - strandat 2575.602 kb on - strandat 2575.602 kb on - strandat 2575.640 kb on - strandat 2575.647 kb on - strandat 2575.647 kb on - strandat 2575.655 kb on + strandat 2575.656 kb on - strandat 2575.657 kb on - strandat 2575.672 kb on - strand, within MPMX20_02439at 2575.755 kb on + strand, within MPMX20_02439at 2575.765 kb on - strand, within MPMX20_02439at 2575.855 kb on + strand, within MPMX20_02439at 2575.861 kb on - strand, within MPMX20_02439at 2575.863 kb on + strand, within MPMX20_02439at 2575.870 kb on + strand, within MPMX20_02439at 2575.871 kb on - strand, within MPMX20_02439at 2575.878 kb on - strand, within MPMX20_02439at 2575.899 kb on + strand, within MPMX20_02439at 2575.899 kb on + strand, within MPMX20_02439at 2575.937 kb on + strand, within MPMX20_02439at 2575.945 kb on - strandat 2575.972 kb on + strandat 2575.979 kb on + strandat 2575.980 kb on - strandat 2575.987 kb on - strandat 2575.987 kb on - strandat 2575.992 kb on - strandat 2576.004 kb on - strandat 2576.004 kb on - strandat 2576.014 kb on - strandat 2576.031 kb on + strandat 2576.049 kb on + strandat 2576.059 kb on + strandat 2576.141 kb on - strandat 2576.143 kb on - strandat 2576.230 kb on + strandat 2576.244 kb on + strandat 2576.272 kb on + strandat 2576.272 kb on + strandat 2576.280 kb on - strandat 2576.280 kb on - strandat 2576.280 kb on - strandat 2576.280 kb on - strandat 2576.287 kb on + strandat 2576.295 kb on - strandat 2576.295 kb on - strandat 2576.377 kb on + strandat 2576.377 kb on + strandat 2576.385 kb on - strandat 2576.385 kb on - strandat 2576.385 kb on - strandat 2576.386 kb on + strandat 2576.404 kb on + strandat 2576.486 kb on - strand, within MPMX20_02440at 2576.486 kb on - strand, within MPMX20_02440at 2576.486 kb on - strand, within MPMX20_02440at 2576.488 kb on + strand, within MPMX20_02440at 2576.496 kb on - strand, within MPMX20_02440at 2576.515 kb on - strand, within MPMX20_02440at 2576.541 kb on + strand, within MPMX20_02440at 2576.699 kb on + strand, within MPMX20_02440at 2576.699 kb on + strand, within MPMX20_02440at 2576.699 kb on + strand, within MPMX20_02440at 2576.704 kb on + strand, within MPMX20_02440at 2576.743 kb on - strand, within MPMX20_02440at 2576.826 kb on + strand, within MPMX20_02440at 2576.834 kb on - strand, within MPMX20_02440at 2576.879 kb on - strand, within MPMX20_02440at 2576.928 kb on + strand, within MPMX20_02440at 2576.928 kb on + strand, within MPMX20_02440at 2576.936 kb on - strand, within MPMX20_02440at 2576.936 kb on - strand, within MPMX20_02440at 2576.951 kb on + strand, within MPMX20_02440at 2576.951 kb on + strand, within MPMX20_02440at 2577.051 kb on + strand, within MPMX20_02440at 2577.230 kb on - strandat 2577.288 kb on - strandat 2577.293 kb on + strandat 2577.423 kb on - strandat 2577.427 kb on + strandat 2577.435 kb on - strandat 2577.531 kb on - strand, within MPMX20_02441at 2577.575 kb on - strand, within MPMX20_02441at 2577.595 kb on + strand, within MPMX20_02441at 2577.595 kb on + strand, within MPMX20_02441at 2577.689 kb on + strand, within MPMX20_02441at 2577.710 kb on + strand, within MPMX20_02441at 2577.760 kb on - strand, within MPMX20_02441at 2577.885 kb on + strand, within MPMX20_02441at 2577.890 kb on + strand, within MPMX20_02441at 2577.890 kb on + strand, within MPMX20_02441at 2577.890 kb on + strand, within MPMX20_02441at 2577.890 kb on + strand, within MPMX20_02441at 2577.891 kb on - strand, within MPMX20_02441at 2577.893 kb on - strand, within MPMX20_02441at 2577.898 kb on - strand, within MPMX20_02441at 2577.898 kb on - strand, within MPMX20_02441at 2577.915 kb on - strand, within MPMX20_02441at 2577.968 kb on + strand, within MPMX20_02441at 2577.972 kb on - strand, within MPMX20_02441at 2578.060 kb on - strand, within MPMX20_02441at 2578.118 kb on + strand, within MPMX20_02441at 2578.118 kb on + strand, within MPMX20_02441at 2578.123 kb on + strand, within MPMX20_02441at 2578.126 kb on - strand, within MPMX20_02441at 2578.126 kb on - strand, within MPMX20_02441at 2578.209 kb on - strand, within MPMX20_02441at 2578.228 kb on + strand, within MPMX20_02441at 2578.236 kb on - strand, within MPMX20_02441

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
remove
2,575,328 + MPMX20_02438 0.64 -2.2
2,575,330 - MPMX20_02438 0.65 -0.2
2,575,330 - MPMX20_02438 0.65 +1.1
2,575,330 - MPMX20_02438 0.65 -0.3
2,575,330 - MPMX20_02438 0.65 -1.2
2,575,330 - MPMX20_02438 0.65 +0.4
2,575,330 - MPMX20_02438 0.65 +2.1
2,575,330 - MPMX20_02438 0.65 +0.5
2,575,330 - MPMX20_02438 0.65 +0.5
2,575,353 + MPMX20_02438 0.70 +0.1
2,575,365 + MPMX20_02438 0.72 +0.1
2,575,457 + -1.0
2,575,502 - +0.7
2,575,502 - -1.5
2,575,556 - +2.1
2,575,594 + +0.1
2,575,594 + +1.4
2,575,602 - -0.4
2,575,602 - -2.7
2,575,602 - +0.2
2,575,602 - -0.4
2,575,640 - +1.1
2,575,647 - +1.9
2,575,647 - -2.2
2,575,655 + +0.5
2,575,656 - +0.3
2,575,657 - +0.7
2,575,672 - MPMX20_02439 0.11 +1.7
2,575,755 + MPMX20_02439 0.35 -0.4
2,575,765 - MPMX20_02439 0.38 +0.3
2,575,855 + MPMX20_02439 0.64 +0.1
2,575,861 - MPMX20_02439 0.66 +0.0
2,575,863 + MPMX20_02439 0.67 -1.0
2,575,870 + MPMX20_02439 0.69 -0.2
2,575,871 - MPMX20_02439 0.69 +0.1
2,575,878 - MPMX20_02439 0.71 -0.5
2,575,899 + MPMX20_02439 0.77 +0.0
2,575,899 + MPMX20_02439 0.77 -0.7
2,575,937 + MPMX20_02439 0.88 +0.2
2,575,945 - +0.0
2,575,972 + -0.5
2,575,979 + +0.4
2,575,980 - -0.5
2,575,987 - -0.0
2,575,987 - +0.8
2,575,992 - +1.4
2,576,004 - +0.7
2,576,004 - -0.5
2,576,014 - +0.7
2,576,031 + -0.2
2,576,049 + +0.2
2,576,059 + -1.2
2,576,141 - -1.5
2,576,143 - -0.6
2,576,230 + +0.1
2,576,244 + -0.0
2,576,272 + +0.6
2,576,272 + +0.2
2,576,280 - +0.2
2,576,280 - -1.3
2,576,280 - +1.1
2,576,280 - -1.1
2,576,287 + -0.9
2,576,295 - +0.4
2,576,295 - +1.5
2,576,377 + +0.5
2,576,377 + +0.3
2,576,385 - +0.6
2,576,385 - +0.6
2,576,385 - +0.1
2,576,386 + +0.5
2,576,404 + -1.3
2,576,486 - MPMX20_02440 0.17 +0.7
2,576,486 - MPMX20_02440 0.17 -0.4
2,576,486 - MPMX20_02440 0.17 -0.3
2,576,488 + MPMX20_02440 0.17 +3.5
2,576,496 - MPMX20_02440 0.18 -0.3
2,576,515 - MPMX20_02440 0.20 -0.4
2,576,541 + MPMX20_02440 0.23 +0.4
2,576,699 + MPMX20_02440 0.40 -0.2
2,576,699 + MPMX20_02440 0.40 +1.3
2,576,699 + MPMX20_02440 0.40 -0.5
2,576,704 + MPMX20_02440 0.40 -0.7
2,576,743 - MPMX20_02440 0.45 -0.5
2,576,826 + MPMX20_02440 0.53 +0.3
2,576,834 - MPMX20_02440 0.54 +0.2
2,576,879 - MPMX20_02440 0.59 +1.1
2,576,928 + MPMX20_02440 0.64 +0.6
2,576,928 + MPMX20_02440 0.64 -0.2
2,576,936 - MPMX20_02440 0.65 -0.9
2,576,936 - MPMX20_02440 0.65 -0.4
2,576,951 + MPMX20_02440 0.67 -0.1
2,576,951 + MPMX20_02440 0.67 +0.4
2,577,051 + MPMX20_02440 0.77 +1.0
2,577,230 - +0.1
2,577,288 - +0.5
2,577,293 + -1.7
2,577,423 - -1.5
2,577,427 + +0.4
2,577,435 - +1.0
2,577,531 - MPMX20_02441 0.16 +1.1
2,577,575 - MPMX20_02441 0.19 -0.1
2,577,595 + MPMX20_02441 0.21 -2.7
2,577,595 + MPMX20_02441 0.21 -0.2
2,577,689 + MPMX20_02441 0.27 +0.7
2,577,710 + MPMX20_02441 0.29 -0.3
2,577,760 - MPMX20_02441 0.33 -1.2
2,577,885 + MPMX20_02441 0.42 +0.2
2,577,890 + MPMX20_02441 0.42 -0.0
2,577,890 + MPMX20_02441 0.42 -0.7
2,577,890 + MPMX20_02441 0.42 +0.1
2,577,890 + MPMX20_02441 0.42 +0.2
2,577,891 - MPMX20_02441 0.42 +0.3
2,577,893 - MPMX20_02441 0.42 +1.1
2,577,898 - MPMX20_02441 0.43 +0.1
2,577,898 - MPMX20_02441 0.43 +1.5
2,577,915 - MPMX20_02441 0.44 -0.6
2,577,968 + MPMX20_02441 0.48 +1.1
2,577,972 - MPMX20_02441 0.48 +0.2
2,578,060 - MPMX20_02441 0.54 -2.0
2,578,118 + MPMX20_02441 0.59 +0.4
2,578,118 + MPMX20_02441 0.59 -0.9
2,578,123 + MPMX20_02441 0.59 -0.2
2,578,126 - MPMX20_02441 0.59 +0.1
2,578,126 - MPMX20_02441 0.59 +0.5
2,578,209 - MPMX20_02441 0.65 -0.1
2,578,228 + MPMX20_02441 0.67 +0.8
2,578,236 - MPMX20_02441 0.67 +1.1

Or see this region's nucleotide sequence