Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00458

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00456 and MPMX20_00457 are separated by 71 nucleotidesMPMX20_00457 and MPMX20_00458 are separated by 62 nucleotidesMPMX20_00458 and MPMX20_00459 are separated by 192 nucleotidesMPMX20_00459 and MPMX20_00460 are separated by 38 nucleotides MPMX20_00456: MPMX20_00456 - Modulator of FtsH protease HflC, at 471,118 to 472,122 _00456 MPMX20_00457: MPMX20_00457 - hypothetical protein, at 472,194 to 472,391 _00457 MPMX20_00458: MPMX20_00458 - Adenylosuccinate synthetase, at 472,454 to 473,794 _00458 MPMX20_00459: MPMX20_00459 - HTH-type transcriptional repressor NsrR, at 473,987 to 474,412 _00459 MPMX20_00460: MPMX20_00460 - Ribonuclease R, at 474,451 to 476,892 _00460 Position (kb) 472 473 474Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 471.590 kb on - strand, within MPMX20_00456at 471.663 kb on - strand, within MPMX20_00456at 471.705 kb on + strand, within MPMX20_00456at 471.705 kb on + strand, within MPMX20_00456at 471.713 kb on - strand, within MPMX20_00456at 471.715 kb on + strand, within MPMX20_00456at 471.715 kb on - strand, within MPMX20_00456at 471.723 kb on - strand, within MPMX20_00456at 471.743 kb on + strand, within MPMX20_00456at 471.774 kb on + strand, within MPMX20_00456at 471.784 kb on + strand, within MPMX20_00456at 471.842 kb on + strand, within MPMX20_00456at 471.898 kb on - strand, within MPMX20_00456at 471.928 kb on - strand, within MPMX20_00456at 471.928 kb on - strand, within MPMX20_00456at 471.935 kb on + strand, within MPMX20_00456at 471.993 kb on - strand, within MPMX20_00456at 472.104 kb on + strandat 472.104 kb on + strandat 472.104 kb on + strandat 472.141 kb on + strandat 472.210 kb on + strandat 472.220 kb on + strand, within MPMX20_00457at 472.243 kb on + strand, within MPMX20_00457at 472.243 kb on + strand, within MPMX20_00457at 472.243 kb on + strand, within MPMX20_00457at 472.280 kb on + strand, within MPMX20_00457at 472.288 kb on - strand, within MPMX20_00457at 472.291 kb on + strand, within MPMX20_00457at 472.336 kb on + strand, within MPMX20_00457at 472.336 kb on + strand, within MPMX20_00457at 472.344 kb on - strand, within MPMX20_00457at 472.344 kb on - strand, within MPMX20_00457at 472.344 kb on - strand, within MPMX20_00457at 472.344 kb on - strand, within MPMX20_00457at 473.804 kb on + strandat 473.804 kb on + strandat 473.812 kb on - strandat 473.812 kb on - strandat 473.944 kb on + strandat 474.008 kb on + strandat 474.028 kb on + strandat 474.028 kb on + strandat 474.028 kb on + strandat 474.028 kb on + strandat 474.036 kb on - strand, within MPMX20_00459at 474.085 kb on + strand, within MPMX20_00459at 474.085 kb on + strand, within MPMX20_00459at 474.085 kb on + strand, within MPMX20_00459at 474.085 kb on + strand, within MPMX20_00459at 474.085 kb on + strand, within MPMX20_00459at 474.085 kb on + strand, within MPMX20_00459at 474.085 kb on + strand, within MPMX20_00459at 474.085 kb on + strand, within MPMX20_00459at 474.093 kb on - strand, within MPMX20_00459at 474.093 kb on - strand, within MPMX20_00459at 474.093 kb on - strand, within MPMX20_00459at 474.093 kb on - strand, within MPMX20_00459at 474.093 kb on - strand, within MPMX20_00459at 474.093 kb on - strand, within MPMX20_00459at 474.093 kb on - strand, within MPMX20_00459at 474.093 kb on - strand, within MPMX20_00459at 474.093 kb on - strand, within MPMX20_00459at 474.093 kb on - strand, within MPMX20_00459at 474.093 kb on - strand, within MPMX20_00459at 474.093 kb on - strand, within MPMX20_00459at 474.130 kb on + strand, within MPMX20_00459at 474.149 kb on - strand, within MPMX20_00459at 474.187 kb on + strand, within MPMX20_00459at 474.212 kb on - strand, within MPMX20_00459at 474.212 kb on - strand, within MPMX20_00459at 474.294 kb on + strand, within MPMX20_00459at 474.356 kb on - strand, within MPMX20_00459at 474.384 kb on - strandat 474.428 kb on + strandat 474.510 kb on - strandat 474.529 kb on - strandat 474.577 kb on + strandat 474.603 kb on + strandat 474.606 kb on - strandat 474.692 kb on + strandat 474.741 kb on - strand, within MPMX20_00460at 474.768 kb on + strand, within MPMX20_00460at 474.782 kb on + strand, within MPMX20_00460at 474.790 kb on - strand, within MPMX20_00460

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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471,590 - MPMX20_00456 0.47 +0.6
471,663 - MPMX20_00456 0.54 -4.3
471,705 + MPMX20_00456 0.58 -2.2
471,705 + MPMX20_00456 0.58 -1.3
471,713 - MPMX20_00456 0.59 -1.5
471,715 + MPMX20_00456 0.59 -1.8
471,715 - MPMX20_00456 0.59 -3.4
471,723 - MPMX20_00456 0.60 -1.4
471,743 + MPMX20_00456 0.62 -2.4
471,774 + MPMX20_00456 0.65 -4.0
471,784 + MPMX20_00456 0.66 -2.5
471,842 + MPMX20_00456 0.72 -1.5
471,898 - MPMX20_00456 0.78 -2.4
471,928 - MPMX20_00456 0.81 -0.9
471,928 - MPMX20_00456 0.81 -2.2
471,935 + MPMX20_00456 0.81 -2.2
471,993 - MPMX20_00456 0.87 -0.1
472,104 + -0.5
472,104 + +0.2
472,104 + +0.1
472,141 + -0.2
472,210 + +0.7
472,220 + MPMX20_00457 0.13 +0.2
472,243 + MPMX20_00457 0.25 +0.2
472,243 + MPMX20_00457 0.25 +1.0
472,243 + MPMX20_00457 0.25 -0.5
472,280 + MPMX20_00457 0.43 +0.2
472,288 - MPMX20_00457 0.47 +0.1
472,291 + MPMX20_00457 0.49 +0.5
472,336 + MPMX20_00457 0.72 +1.0
472,336 + MPMX20_00457 0.72 -0.3
472,344 - MPMX20_00457 0.76 -1.0
472,344 - MPMX20_00457 0.76 +0.1
472,344 - MPMX20_00457 0.76 -1.0
472,344 - MPMX20_00457 0.76 -1.3
473,804 + +1.0
473,804 + +0.4
473,812 - +0.3
473,812 - -1.1
473,944 + -0.2
474,008 + -0.5
474,028 + -0.4
474,028 + +0.5
474,028 + -0.1
474,028 + +2.0
474,036 - MPMX20_00459 0.12 -2.4
474,085 + MPMX20_00459 0.23 -0.5
474,085 + MPMX20_00459 0.23 +0.3
474,085 + MPMX20_00459 0.23 +1.1
474,085 + MPMX20_00459 0.23 +0.7
474,085 + MPMX20_00459 0.23 +0.2
474,085 + MPMX20_00459 0.23 +0.1
474,085 + MPMX20_00459 0.23 -0.0
474,085 + MPMX20_00459 0.23 -0.1
474,093 - MPMX20_00459 0.25 +0.9
474,093 - MPMX20_00459 0.25 +0.6
474,093 - MPMX20_00459 0.25 +1.1
474,093 - MPMX20_00459 0.25 -1.2
474,093 - MPMX20_00459 0.25 -0.8
474,093 - MPMX20_00459 0.25 -0.3
474,093 - MPMX20_00459 0.25 -1.0
474,093 - MPMX20_00459 0.25 -0.3
474,093 - MPMX20_00459 0.25 -0.4
474,093 - MPMX20_00459 0.25 +0.4
474,093 - MPMX20_00459 0.25 -2.1
474,093 - MPMX20_00459 0.25 -0.5
474,130 + MPMX20_00459 0.34 -0.5
474,149 - MPMX20_00459 0.38 -2.4
474,187 + MPMX20_00459 0.47 +1.5
474,212 - MPMX20_00459 0.53 -0.5
474,212 - MPMX20_00459 0.53 -0.1
474,294 + MPMX20_00459 0.72 -1.3
474,356 - MPMX20_00459 0.87 -1.1
474,384 - +0.0
474,428 + +0.2
474,510 - -0.6
474,529 - -0.5
474,577 + +0.0
474,603 + -1.4
474,606 - -1.5
474,692 + -2.7
474,741 - MPMX20_00460 0.12 -0.5
474,768 + MPMX20_00460 0.13 -0.7
474,782 + MPMX20_00460 0.14 -1.6
474,790 - MPMX20_00460 0.14 -0.3

Or see this region's nucleotide sequence