Experiment: Glycine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02711 and MPMX20_02712 are separated by 169 nucleotides MPMX20_02712 and MPMX20_02713 are separated by 37 nucleotides MPMX20_02713 and MPMX20_02714 are separated by 66 nucleotides
MPMX20_02711: MPMX20_02711 - Long-chain-fatty-acid--CoA ligase, at 2,864,121 to 2,865,839
_02711
MPMX20_02712: MPMX20_02712 - Outer membrane protein Slp, at 2,866,009 to 2,866,590
_02712
MPMX20_02713: MPMX20_02713 - tRNA threonylcarbamoyladenosine biosynthesis protein TsaB, at 2,866,628 to 2,867,323
_02713
MPMX20_02714: MPMX20_02714 - putative ATP-dependent DNA helicase YoaA, at 2,867,390 to 2,869,300
_02714
Position (kb)
2866
2867 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2865.096 kb on - strand, within MPMX20_02711 at 2865.106 kb on - strand, within MPMX20_02711 at 2865.117 kb on + strand, within MPMX20_02711 at 2865.125 kb on + strand, within MPMX20_02711 at 2865.147 kb on - strand, within MPMX20_02711 at 2865.210 kb on + strand, within MPMX20_02711 at 2865.218 kb on - strand, within MPMX20_02711 at 2865.312 kb on + strand, within MPMX20_02711 at 2865.318 kb on - strand, within MPMX20_02711 at 2865.334 kb on + strand, within MPMX20_02711 at 2865.506 kb on - strand, within MPMX20_02711 at 2865.527 kb on - strand, within MPMX20_02711 at 2865.544 kb on - strand, within MPMX20_02711 at 2865.605 kb on - strand, within MPMX20_02711 at 2865.639 kb on + strand, within MPMX20_02711 at 2865.686 kb on - strand at 2865.692 kb on + strand at 2865.700 kb on - strand at 2865.705 kb on - strand at 2865.705 kb on - strand at 2865.746 kb on + strand at 2865.751 kb on + strand at 2865.751 kb on + strand at 2865.751 kb on + strand at 2865.751 kb on + strand at 2865.784 kb on + strand at 2865.786 kb on - strand at 2865.790 kb on + strand at 2865.790 kb on + strand at 2865.798 kb on - strand at 2865.814 kb on + strand at 2865.822 kb on - strand at 2865.822 kb on - strand at 2865.908 kb on + strand at 2866.040 kb on + strand at 2866.040 kb on + strand at 2866.040 kb on + strand at 2866.040 kb on + strand at 2866.040 kb on + strand at 2866.040 kb on + strand at 2866.043 kb on - strand at 2866.048 kb on - strand at 2866.094 kb on - strand, within MPMX20_02712 at 2866.107 kb on - strand, within MPMX20_02712 at 2866.223 kb on - strand, within MPMX20_02712 at 2866.246 kb on + strand, within MPMX20_02712 at 2866.254 kb on - strand, within MPMX20_02712 at 2866.348 kb on - strand, within MPMX20_02712 at 2866.390 kb on + strand, within MPMX20_02712 at 2866.443 kb on + strand, within MPMX20_02712 at 2866.451 kb on - strand, within MPMX20_02712 at 2866.482 kb on + strand, within MPMX20_02712 at 2866.533 kb on + strand at 2866.541 kb on - strand at 2866.541 kb on - strand at 2866.543 kb on - strand at 2866.564 kb on - strand at 2866.571 kb on + strand at 2866.571 kb on + strand at 2866.571 kb on + strand at 2866.579 kb on - strand at 2866.623 kb on - strand at 2867.489 kb on - strand at 2867.511 kb on + strand at 2867.546 kb on + strand at 2867.563 kb on - strand at 2867.563 kb on - strand at 2867.573 kb on + strand at 2867.574 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (C) remove 2,865,096 - MPMX20_02711 0.57 -3.0 2,865,106 - MPMX20_02711 0.57 -0.3 2,865,117 + MPMX20_02711 0.58 -2.2 2,865,125 + MPMX20_02711 0.58 +1.0 2,865,147 - MPMX20_02711 0.60 -3.3 2,865,210 + MPMX20_02711 0.63 -1.8 2,865,218 - MPMX20_02711 0.64 -2.0 2,865,312 + MPMX20_02711 0.69 -2.2 2,865,318 - MPMX20_02711 0.70 +0.5 2,865,334 + MPMX20_02711 0.71 -1.7 2,865,506 - MPMX20_02711 0.81 -1.1 2,865,527 - MPMX20_02711 0.82 +0.3 2,865,544 - MPMX20_02711 0.83 -1.2 2,865,605 - MPMX20_02711 0.86 -0.5 2,865,639 + MPMX20_02711 0.88 -0.7 2,865,686 - -0.6 2,865,692 + -1.8 2,865,700 - -1.5 2,865,705 - +1.2 2,865,705 - -0.1 2,865,746 + -3.3 2,865,751 + -1.7 2,865,751 + +0.4 2,865,751 + -0.5 2,865,751 + -2.2 2,865,784 + -1.3 2,865,786 - +0.5 2,865,790 + -0.2 2,865,790 + -0.1 2,865,798 - +2.2 2,865,814 + +0.4 2,865,822 - +0.1 2,865,822 - -1.6 2,865,908 + +1.2 2,866,040 + +0.2 2,866,040 + -1.7 2,866,040 + -0.8 2,866,040 + +0.1 2,866,040 + +2.2 2,866,040 + +0.2 2,866,043 - +2.3 2,866,048 - -1.1 2,866,094 - MPMX20_02712 0.15 +0.6 2,866,107 - MPMX20_02712 0.17 -0.2 2,866,223 - MPMX20_02712 0.37 -1.8 2,866,246 + MPMX20_02712 0.41 -0.7 2,866,254 - MPMX20_02712 0.42 +0.5 2,866,348 - MPMX20_02712 0.58 -2.4 2,866,390 + MPMX20_02712 0.65 -1.1 2,866,443 + MPMX20_02712 0.75 -0.4 2,866,451 - MPMX20_02712 0.76 -1.0 2,866,482 + MPMX20_02712 0.81 +0.6 2,866,533 + +0.5 2,866,541 - -0.3 2,866,541 - -3.6 2,866,543 - +0.7 2,866,564 - +0.8 2,866,571 + -0.3 2,866,571 + -0.5 2,866,571 + +0.5 2,866,579 - -1.6 2,866,623 - -0.4 2,867,489 - -1.8 2,867,511 + -0.3 2,867,546 + +1.5 2,867,563 - +1.2 2,867,563 - +1.0 2,867,573 + -0.8 2,867,574 - +0.8
Or see this region's nucleotide sequence