Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02636

Experiment: L-Cysteine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02634 and MPMX20_02635 overlap by 4 nucleotidesMPMX20_02635 and MPMX20_02636 overlap by 1 nucleotidesMPMX20_02636 and MPMX20_02637 are separated by 41 nucleotides MPMX20_02634: MPMX20_02634 - Protein YchQ, at 2,778,094 to 2,778,486 _02634 MPMX20_02635: MPMX20_02635 - Release factor glutamine methyltransferase, at 2,778,483 to 2,779,313 _02635 MPMX20_02636: MPMX20_02636 - Peptide chain release factor RF1, at 2,779,313 to 2,780,395 _02636 MPMX20_02637: MPMX20_02637 - Glutamyl-tRNA reductase, at 2,780,437 to 2,781,693 _02637 Position (kb) 2779 2780 2781Strain fitness (log2 ratio) -3 -2 -1 0 1at 2778.336 kb on - strand, within MPMX20_02634at 2778.339 kb on + strand, within MPMX20_02634at 2778.347 kb on - strand, within MPMX20_02634at 2778.347 kb on - strand, within MPMX20_02634at 2778.347 kb on - strand, within MPMX20_02634at 2778.438 kb on + strand, within MPMX20_02634at 2778.446 kb on + strand, within MPMX20_02634at 2778.446 kb on + strand, within MPMX20_02634at 2778.459 kb on - strandat 2778.803 kb on + strand, within MPMX20_02635at 2778.833 kb on + strand, within MPMX20_02635at 2778.841 kb on - strand, within MPMX20_02635at 2778.856 kb on + strand, within MPMX20_02635at 2778.930 kb on + strand, within MPMX20_02635at 2779.073 kb on - strand, within MPMX20_02635at 2779.086 kb on - strand, within MPMX20_02635at 2779.289 kb on + strandat 2779.297 kb on - strandat 2779.297 kb on - strandat 2779.297 kb on - strandat 2780.447 kb on - strandat 2780.447 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Cysteine (C)
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2,778,336 - MPMX20_02634 0.62 +0.1
2,778,339 + MPMX20_02634 0.62 -0.8
2,778,347 - MPMX20_02634 0.64 +1.2
2,778,347 - MPMX20_02634 0.64 -0.1
2,778,347 - MPMX20_02634 0.64 +1.0
2,778,438 + MPMX20_02634 0.88 -0.2
2,778,446 + MPMX20_02634 0.90 +0.1
2,778,446 + MPMX20_02634 0.90 -2.3
2,778,459 - +0.2
2,778,803 + MPMX20_02635 0.39 -1.4
2,778,833 + MPMX20_02635 0.42 -1.3
2,778,841 - MPMX20_02635 0.43 -2.8
2,778,856 + MPMX20_02635 0.45 -1.1
2,778,930 + MPMX20_02635 0.54 -1.8
2,779,073 - MPMX20_02635 0.71 -1.5
2,779,086 - MPMX20_02635 0.73 -2.7
2,779,289 + -1.8
2,779,297 - -3.2
2,779,297 - +0.9
2,779,297 - -1.4
2,780,447 - -1.4
2,780,447 - -1.3

Or see this region's nucleotide sequence