Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04411

Experiment: L-Asparagine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04410 and MPMX20_04411 are separated by 228 nucleotidesMPMX20_04411 and MPMX20_04412 are separated by 43 nucleotides MPMX20_04410: MPMX20_04410 - Cyclic di-GMP phosphodiesterase PdeH, at 4,603,767 to 4,604,540 _04410 MPMX20_04411: MPMX20_04411 - 2-dehydro-3-deoxygluconokinase, at 4,604,769 to 4,605,698 _04411 MPMX20_04412: MPMX20_04412 - Protein YhjJ, at 4,605,742 to 4,607,235 _04412 Position (kb) 4604 4605 4606Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4603.773 kb on - strandat 4603.773 kb on - strandat 4603.773 kb on - strandat 4603.773 kb on - strandat 4603.792 kb on + strandat 4603.795 kb on - strandat 4603.879 kb on - strand, within MPMX20_04410at 4603.881 kb on + strand, within MPMX20_04410at 4603.896 kb on - strand, within MPMX20_04410at 4603.897 kb on + strand, within MPMX20_04410at 4603.915 kb on - strand, within MPMX20_04410at 4603.955 kb on + strand, within MPMX20_04410at 4603.963 kb on + strand, within MPMX20_04410at 4603.963 kb on - strand, within MPMX20_04410at 4603.996 kb on + strand, within MPMX20_04410at 4603.997 kb on + strand, within MPMX20_04410at 4604.005 kb on - strand, within MPMX20_04410at 4604.005 kb on - strand, within MPMX20_04410at 4604.027 kb on + strand, within MPMX20_04410at 4604.027 kb on + strand, within MPMX20_04410at 4604.027 kb on + strand, within MPMX20_04410at 4604.029 kb on + strand, within MPMX20_04410at 4604.035 kb on - strand, within MPMX20_04410at 4604.114 kb on - strand, within MPMX20_04410at 4604.125 kb on + strand, within MPMX20_04410at 4604.143 kb on - strand, within MPMX20_04410at 4604.205 kb on + strand, within MPMX20_04410at 4604.212 kb on - strand, within MPMX20_04410at 4604.212 kb on - strand, within MPMX20_04410at 4604.238 kb on + strand, within MPMX20_04410at 4604.298 kb on + strand, within MPMX20_04410at 4604.305 kb on - strand, within MPMX20_04410at 4604.351 kb on + strand, within MPMX20_04410at 4604.360 kb on + strand, within MPMX20_04410at 4604.429 kb on + strand, within MPMX20_04410at 4604.437 kb on - strand, within MPMX20_04410at 4604.506 kb on + strandat 4604.509 kb on - strandat 4604.514 kb on - strandat 4604.514 kb on - strandat 4604.578 kb on + strandat 4604.584 kb on + strandat 4604.586 kb on + strandat 4604.729 kb on + strandat 4604.751 kb on - strandat 4604.753 kb on + strandat 4604.761 kb on - strandat 4604.761 kb on - strandat 4604.761 kb on - strandat 4604.883 kb on - strand, within MPMX20_04411at 4604.989 kb on - strand, within MPMX20_04411at 4605.033 kb on - strand, within MPMX20_04411at 4605.107 kb on + strand, within MPMX20_04411at 4605.115 kb on + strand, within MPMX20_04411at 4605.141 kb on - strand, within MPMX20_04411at 4605.146 kb on - strand, within MPMX20_04411at 4605.172 kb on + strand, within MPMX20_04411at 4605.172 kb on + strand, within MPMX20_04411at 4605.172 kb on + strand, within MPMX20_04411at 4605.172 kb on + strand, within MPMX20_04411at 4605.172 kb on + strand, within MPMX20_04411at 4605.172 kb on + strand, within MPMX20_04411at 4605.172 kb on + strand, within MPMX20_04411at 4605.180 kb on - strand, within MPMX20_04411at 4605.180 kb on - strand, within MPMX20_04411at 4605.180 kb on - strand, within MPMX20_04411at 4605.185 kb on - strand, within MPMX20_04411at 4605.218 kb on + strand, within MPMX20_04411at 4605.228 kb on + strand, within MPMX20_04411at 4605.277 kb on - strand, within MPMX20_04411at 4605.284 kb on + strand, within MPMX20_04411at 4605.284 kb on + strand, within MPMX20_04411at 4605.284 kb on + strand, within MPMX20_04411at 4605.292 kb on - strand, within MPMX20_04411at 4605.295 kb on + strand, within MPMX20_04411at 4605.295 kb on + strand, within MPMX20_04411at 4605.295 kb on + strand, within MPMX20_04411at 4605.295 kb on + strand, within MPMX20_04411at 4605.295 kb on + strand, within MPMX20_04411at 4605.303 kb on - strand, within MPMX20_04411at 4605.303 kb on - strand, within MPMX20_04411at 4605.303 kb on - strand, within MPMX20_04411at 4605.323 kb on + strand, within MPMX20_04411at 4605.404 kb on + strand, within MPMX20_04411at 4605.444 kb on - strand, within MPMX20_04411at 4605.457 kb on + strand, within MPMX20_04411at 4605.568 kb on + strand, within MPMX20_04411at 4605.795 kb on - strandat 4605.883 kb on - strandat 4605.923 kb on + strand, within MPMX20_04412at 4605.965 kb on - strand, within MPMX20_04412at 4605.965 kb on - strand, within MPMX20_04412at 4605.978 kb on + strand, within MPMX20_04412at 4605.986 kb on - strand, within MPMX20_04412at 4606.015 kb on + strand, within MPMX20_04412at 4606.023 kb on - strand, within MPMX20_04412at 4606.081 kb on - strand, within MPMX20_04412at 4606.105 kb on - strand, within MPMX20_04412at 4606.118 kb on + strand, within MPMX20_04412at 4606.144 kb on - strand, within MPMX20_04412at 4606.246 kb on - strand, within MPMX20_04412at 4606.246 kb on - strand, within MPMX20_04412at 4606.256 kb on - strand, within MPMX20_04412at 4606.288 kb on + strand, within MPMX20_04412at 4606.313 kb on + strand, within MPMX20_04412at 4606.313 kb on + strand, within MPMX20_04412at 4606.313 kb on + strand, within MPMX20_04412at 4606.321 kb on - strand, within MPMX20_04412at 4606.391 kb on + strand, within MPMX20_04412at 4606.391 kb on - strand, within MPMX20_04412at 4606.399 kb on - strand, within MPMX20_04412at 4606.460 kb on - strand, within MPMX20_04412at 4606.526 kb on + strand, within MPMX20_04412at 4606.531 kb on + strand, within MPMX20_04412at 4606.536 kb on + strand, within MPMX20_04412at 4606.545 kb on + strand, within MPMX20_04412at 4606.553 kb on - strand, within MPMX20_04412at 4606.553 kb on - strand, within MPMX20_04412at 4606.560 kb on - strand, within MPMX20_04412at 4606.560 kb on - strand, within MPMX20_04412at 4606.595 kb on - strand, within MPMX20_04412at 4606.662 kb on + strand, within MPMX20_04412at 4606.667 kb on + strand, within MPMX20_04412at 4606.677 kb on + strand, within MPMX20_04412at 4606.685 kb on - strand, within MPMX20_04412at 4606.685 kb on - strand, within MPMX20_04412at 4606.685 kb on - strand, within MPMX20_04412

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
remove
4,603,773 - +0.8
4,603,773 - -1.5
4,603,773 - -0.2
4,603,773 - -0.4
4,603,792 + +0.4
4,603,795 - +2.1
4,603,879 - MPMX20_04410 0.14 +0.9
4,603,881 + MPMX20_04410 0.15 -0.5
4,603,896 - MPMX20_04410 0.17 +0.1
4,603,897 + MPMX20_04410 0.17 +0.4
4,603,915 - MPMX20_04410 0.19 +0.2
4,603,955 + MPMX20_04410 0.24 -2.6
4,603,963 + MPMX20_04410 0.25 -0.4
4,603,963 - MPMX20_04410 0.25 -1.7
4,603,996 + MPMX20_04410 0.30 -0.7
4,603,997 + MPMX20_04410 0.30 -0.1
4,604,005 - MPMX20_04410 0.31 -0.4
4,604,005 - MPMX20_04410 0.31 -1.0
4,604,027 + MPMX20_04410 0.34 +0.1
4,604,027 + MPMX20_04410 0.34 +1.1
4,604,027 + MPMX20_04410 0.34 -2.1
4,604,029 + MPMX20_04410 0.34 -0.9
4,604,035 - MPMX20_04410 0.35 -0.4
4,604,114 - MPMX20_04410 0.45 +0.2
4,604,125 + MPMX20_04410 0.46 -1.5
4,604,143 - MPMX20_04410 0.49 -1.6
4,604,205 + MPMX20_04410 0.57 +0.2
4,604,212 - MPMX20_04410 0.57 +1.4
4,604,212 - MPMX20_04410 0.57 +0.9
4,604,238 + MPMX20_04410 0.61 -0.7
4,604,298 + MPMX20_04410 0.69 -1.5
4,604,305 - MPMX20_04410 0.70 -1.2
4,604,351 + MPMX20_04410 0.75 -0.3
4,604,360 + MPMX20_04410 0.77 -0.3
4,604,429 + MPMX20_04410 0.86 +3.6
4,604,437 - MPMX20_04410 0.87 +0.3
4,604,506 + +0.6
4,604,509 - -0.0
4,604,514 - +1.1
4,604,514 - -1.4
4,604,578 + +2.2
4,604,584 + -1.3
4,604,586 + +1.0
4,604,729 + +1.6
4,604,751 - -1.8
4,604,753 + -0.2
4,604,761 - -0.1
4,604,761 - +0.2
4,604,761 - +0.8
4,604,883 - MPMX20_04411 0.12 -0.6
4,604,989 - MPMX20_04411 0.24 -1.7
4,605,033 - MPMX20_04411 0.28 -0.0
4,605,107 + MPMX20_04411 0.36 +0.9
4,605,115 + MPMX20_04411 0.37 +0.1
4,605,141 - MPMX20_04411 0.40 +0.4
4,605,146 - MPMX20_04411 0.41 +0.2
4,605,172 + MPMX20_04411 0.43 -0.1
4,605,172 + MPMX20_04411 0.43 -0.3
4,605,172 + MPMX20_04411 0.43 +0.6
4,605,172 + MPMX20_04411 0.43 -0.2
4,605,172 + MPMX20_04411 0.43 +0.1
4,605,172 + MPMX20_04411 0.43 -0.7
4,605,172 + MPMX20_04411 0.43 -1.6
4,605,180 - MPMX20_04411 0.44 -0.2
4,605,180 - MPMX20_04411 0.44 +0.6
4,605,180 - MPMX20_04411 0.44 +2.1
4,605,185 - MPMX20_04411 0.45 +0.2
4,605,218 + MPMX20_04411 0.48 +0.4
4,605,228 + MPMX20_04411 0.49 -0.0
4,605,277 - MPMX20_04411 0.55 +0.2
4,605,284 + MPMX20_04411 0.55 -0.0
4,605,284 + MPMX20_04411 0.55 +0.6
4,605,284 + MPMX20_04411 0.55 -1.2
4,605,292 - MPMX20_04411 0.56 -0.2
4,605,295 + MPMX20_04411 0.57 +0.6
4,605,295 + MPMX20_04411 0.57 +0.4
4,605,295 + MPMX20_04411 0.57 -1.5
4,605,295 + MPMX20_04411 0.57 +0.4
4,605,295 + MPMX20_04411 0.57 -0.4
4,605,303 - MPMX20_04411 0.57 -0.1
4,605,303 - MPMX20_04411 0.57 +1.3
4,605,303 - MPMX20_04411 0.57 +3.4
4,605,323 + MPMX20_04411 0.60 -1.0
4,605,404 + MPMX20_04411 0.68 -1.8
4,605,444 - MPMX20_04411 0.73 +0.7
4,605,457 + MPMX20_04411 0.74 +0.0
4,605,568 + MPMX20_04411 0.86 -0.6
4,605,795 - +0.7
4,605,883 - -0.3
4,605,923 + MPMX20_04412 0.12 -0.7
4,605,965 - MPMX20_04412 0.15 -0.6
4,605,965 - MPMX20_04412 0.15 -1.4
4,605,978 + MPMX20_04412 0.16 -1.4
4,605,986 - MPMX20_04412 0.16 -1.2
4,606,015 + MPMX20_04412 0.18 -0.8
4,606,023 - MPMX20_04412 0.19 -1.7
4,606,081 - MPMX20_04412 0.23 -0.3
4,606,105 - MPMX20_04412 0.24 -0.7
4,606,118 + MPMX20_04412 0.25 +0.2
4,606,144 - MPMX20_04412 0.27 -1.5
4,606,246 - MPMX20_04412 0.34 -0.3
4,606,246 - MPMX20_04412 0.34 -1.7
4,606,256 - MPMX20_04412 0.34 -2.7
4,606,288 + MPMX20_04412 0.37 -1.3
4,606,313 + MPMX20_04412 0.38 -1.8
4,606,313 + MPMX20_04412 0.38 +1.1
4,606,313 + MPMX20_04412 0.38 -1.7
4,606,321 - MPMX20_04412 0.39 +1.3
4,606,391 + MPMX20_04412 0.43 -0.4
4,606,391 - MPMX20_04412 0.43 -2.1
4,606,399 - MPMX20_04412 0.44 -0.2
4,606,460 - MPMX20_04412 0.48 +0.5
4,606,526 + MPMX20_04412 0.52 -0.6
4,606,531 + MPMX20_04412 0.53 -2.4
4,606,536 + MPMX20_04412 0.53 -1.1
4,606,545 + MPMX20_04412 0.54 -1.0
4,606,553 - MPMX20_04412 0.54 -1.5
4,606,553 - MPMX20_04412 0.54 -1.1
4,606,560 - MPMX20_04412 0.55 -0.8
4,606,560 - MPMX20_04412 0.55 -0.4
4,606,595 - MPMX20_04412 0.57 +1.1
4,606,662 + MPMX20_04412 0.62 -0.7
4,606,667 + MPMX20_04412 0.62 -0.7
4,606,677 + MPMX20_04412 0.63 -1.4
4,606,685 - MPMX20_04412 0.63 +0.9
4,606,685 - MPMX20_04412 0.63 -0.2
4,606,685 - MPMX20_04412 0.63 +1.1

Or see this region's nucleotide sequence