Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04410 and MPMX20_04411 are separated by 228 nucleotides MPMX20_04411 and MPMX20_04412 are separated by 43 nucleotides
MPMX20_04410: MPMX20_04410 - Cyclic di-GMP phosphodiesterase PdeH, at 4,603,767 to 4,604,540
_04410
MPMX20_04411: MPMX20_04411 - 2-dehydro-3-deoxygluconokinase, at 4,604,769 to 4,605,698
_04411
MPMX20_04412: MPMX20_04412 - Protein YhjJ, at 4,605,742 to 4,607,235
_04412
Position (kb)
4604
4605
4606 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4603.773 kb on - strand at 4603.773 kb on - strand at 4603.773 kb on - strand at 4603.773 kb on - strand at 4603.792 kb on + strand at 4603.795 kb on - strand at 4603.879 kb on - strand, within MPMX20_04410 at 4603.881 kb on + strand, within MPMX20_04410 at 4603.896 kb on - strand, within MPMX20_04410 at 4603.897 kb on + strand, within MPMX20_04410 at 4603.915 kb on - strand, within MPMX20_04410 at 4603.955 kb on + strand, within MPMX20_04410 at 4603.963 kb on + strand, within MPMX20_04410 at 4603.963 kb on - strand, within MPMX20_04410 at 4603.996 kb on + strand, within MPMX20_04410 at 4603.997 kb on + strand, within MPMX20_04410 at 4604.005 kb on - strand, within MPMX20_04410 at 4604.005 kb on - strand, within MPMX20_04410 at 4604.027 kb on + strand, within MPMX20_04410 at 4604.027 kb on + strand, within MPMX20_04410 at 4604.027 kb on + strand, within MPMX20_04410 at 4604.029 kb on + strand, within MPMX20_04410 at 4604.035 kb on - strand, within MPMX20_04410 at 4604.114 kb on - strand, within MPMX20_04410 at 4604.125 kb on + strand, within MPMX20_04410 at 4604.143 kb on - strand, within MPMX20_04410 at 4604.205 kb on + strand, within MPMX20_04410 at 4604.212 kb on - strand, within MPMX20_04410 at 4604.212 kb on - strand, within MPMX20_04410 at 4604.238 kb on + strand, within MPMX20_04410 at 4604.298 kb on + strand, within MPMX20_04410 at 4604.305 kb on - strand, within MPMX20_04410 at 4604.351 kb on + strand, within MPMX20_04410 at 4604.360 kb on + strand, within MPMX20_04410 at 4604.429 kb on + strand, within MPMX20_04410 at 4604.437 kb on - strand, within MPMX20_04410 at 4604.506 kb on + strand at 4604.509 kb on - strand at 4604.514 kb on - strand at 4604.514 kb on - strand at 4604.578 kb on + strand at 4604.584 kb on + strand at 4604.586 kb on + strand at 4604.729 kb on + strand at 4604.751 kb on - strand at 4604.753 kb on + strand at 4604.761 kb on - strand at 4604.761 kb on - strand at 4604.761 kb on - strand at 4604.883 kb on - strand, within MPMX20_04411 at 4604.989 kb on - strand, within MPMX20_04411 at 4605.033 kb on - strand, within MPMX20_04411 at 4605.107 kb on + strand, within MPMX20_04411 at 4605.115 kb on + strand, within MPMX20_04411 at 4605.141 kb on - strand, within MPMX20_04411 at 4605.146 kb on - strand, within MPMX20_04411 at 4605.172 kb on + strand, within MPMX20_04411 at 4605.172 kb on + strand, within MPMX20_04411 at 4605.172 kb on + strand, within MPMX20_04411 at 4605.172 kb on + strand, within MPMX20_04411 at 4605.172 kb on + strand, within MPMX20_04411 at 4605.172 kb on + strand, within MPMX20_04411 at 4605.172 kb on + strand, within MPMX20_04411 at 4605.180 kb on - strand, within MPMX20_04411 at 4605.180 kb on - strand, within MPMX20_04411 at 4605.180 kb on - strand, within MPMX20_04411 at 4605.185 kb on - strand, within MPMX20_04411 at 4605.218 kb on + strand, within MPMX20_04411 at 4605.228 kb on + strand, within MPMX20_04411 at 4605.277 kb on - strand, within MPMX20_04411 at 4605.284 kb on + strand, within MPMX20_04411 at 4605.284 kb on + strand, within MPMX20_04411 at 4605.284 kb on + strand, within MPMX20_04411 at 4605.292 kb on - strand, within MPMX20_04411 at 4605.295 kb on + strand, within MPMX20_04411 at 4605.295 kb on + strand, within MPMX20_04411 at 4605.295 kb on + strand, within MPMX20_04411 at 4605.295 kb on + strand, within MPMX20_04411 at 4605.295 kb on + strand, within MPMX20_04411 at 4605.303 kb on - strand, within MPMX20_04411 at 4605.303 kb on - strand, within MPMX20_04411 at 4605.303 kb on - strand, within MPMX20_04411 at 4605.323 kb on + strand, within MPMX20_04411 at 4605.404 kb on + strand, within MPMX20_04411 at 4605.444 kb on - strand, within MPMX20_04411 at 4605.457 kb on + strand, within MPMX20_04411 at 4605.568 kb on + strand, within MPMX20_04411 at 4605.795 kb on - strand at 4605.883 kb on - strand at 4605.923 kb on + strand, within MPMX20_04412 at 4605.965 kb on - strand, within MPMX20_04412 at 4605.965 kb on - strand, within MPMX20_04412 at 4605.978 kb on + strand, within MPMX20_04412 at 4605.986 kb on - strand, within MPMX20_04412 at 4606.015 kb on + strand, within MPMX20_04412 at 4606.023 kb on - strand, within MPMX20_04412 at 4606.081 kb on - strand, within MPMX20_04412 at 4606.105 kb on - strand, within MPMX20_04412 at 4606.118 kb on + strand, within MPMX20_04412 at 4606.144 kb on - strand, within MPMX20_04412 at 4606.246 kb on - strand, within MPMX20_04412 at 4606.246 kb on - strand, within MPMX20_04412 at 4606.256 kb on - strand, within MPMX20_04412 at 4606.288 kb on + strand, within MPMX20_04412 at 4606.313 kb on + strand, within MPMX20_04412 at 4606.313 kb on + strand, within MPMX20_04412 at 4606.313 kb on + strand, within MPMX20_04412 at 4606.321 kb on - strand, within MPMX20_04412 at 4606.391 kb on + strand, within MPMX20_04412 at 4606.391 kb on - strand, within MPMX20_04412 at 4606.399 kb on - strand, within MPMX20_04412 at 4606.460 kb on - strand, within MPMX20_04412 at 4606.526 kb on + strand, within MPMX20_04412 at 4606.531 kb on + strand, within MPMX20_04412 at 4606.536 kb on + strand, within MPMX20_04412 at 4606.545 kb on + strand, within MPMX20_04412 at 4606.553 kb on - strand, within MPMX20_04412 at 4606.553 kb on - strand, within MPMX20_04412 at 4606.560 kb on - strand, within MPMX20_04412 at 4606.560 kb on - strand, within MPMX20_04412 at 4606.595 kb on - strand, within MPMX20_04412 at 4606.662 kb on + strand, within MPMX20_04412 at 4606.667 kb on + strand, within MPMX20_04412 at 4606.677 kb on + strand, within MPMX20_04412 at 4606.685 kb on - strand, within MPMX20_04412 at 4606.685 kb on - strand, within MPMX20_04412 at 4606.685 kb on - strand, within MPMX20_04412
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 4,603,773 - +0.8 4,603,773 - -1.5 4,603,773 - -0.2 4,603,773 - -0.4 4,603,792 + +0.4 4,603,795 - +2.1 4,603,879 - MPMX20_04410 0.14 +0.9 4,603,881 + MPMX20_04410 0.15 -0.5 4,603,896 - MPMX20_04410 0.17 +0.1 4,603,897 + MPMX20_04410 0.17 +0.4 4,603,915 - MPMX20_04410 0.19 +0.2 4,603,955 + MPMX20_04410 0.24 -2.6 4,603,963 + MPMX20_04410 0.25 -0.4 4,603,963 - MPMX20_04410 0.25 -1.7 4,603,996 + MPMX20_04410 0.30 -0.7 4,603,997 + MPMX20_04410 0.30 -0.1 4,604,005 - MPMX20_04410 0.31 -0.4 4,604,005 - MPMX20_04410 0.31 -1.0 4,604,027 + MPMX20_04410 0.34 +0.1 4,604,027 + MPMX20_04410 0.34 +1.1 4,604,027 + MPMX20_04410 0.34 -2.1 4,604,029 + MPMX20_04410 0.34 -0.9 4,604,035 - MPMX20_04410 0.35 -0.4 4,604,114 - MPMX20_04410 0.45 +0.2 4,604,125 + MPMX20_04410 0.46 -1.5 4,604,143 - MPMX20_04410 0.49 -1.6 4,604,205 + MPMX20_04410 0.57 +0.2 4,604,212 - MPMX20_04410 0.57 +1.4 4,604,212 - MPMX20_04410 0.57 +0.9 4,604,238 + MPMX20_04410 0.61 -0.7 4,604,298 + MPMX20_04410 0.69 -1.5 4,604,305 - MPMX20_04410 0.70 -1.2 4,604,351 + MPMX20_04410 0.75 -0.3 4,604,360 + MPMX20_04410 0.77 -0.3 4,604,429 + MPMX20_04410 0.86 +3.6 4,604,437 - MPMX20_04410 0.87 +0.3 4,604,506 + +0.6 4,604,509 - -0.0 4,604,514 - +1.1 4,604,514 - -1.4 4,604,578 + +2.2 4,604,584 + -1.3 4,604,586 + +1.0 4,604,729 + +1.6 4,604,751 - -1.8 4,604,753 + -0.2 4,604,761 - -0.1 4,604,761 - +0.2 4,604,761 - +0.8 4,604,883 - MPMX20_04411 0.12 -0.6 4,604,989 - MPMX20_04411 0.24 -1.7 4,605,033 - MPMX20_04411 0.28 -0.0 4,605,107 + MPMX20_04411 0.36 +0.9 4,605,115 + MPMX20_04411 0.37 +0.1 4,605,141 - MPMX20_04411 0.40 +0.4 4,605,146 - MPMX20_04411 0.41 +0.2 4,605,172 + MPMX20_04411 0.43 -0.1 4,605,172 + MPMX20_04411 0.43 -0.3 4,605,172 + MPMX20_04411 0.43 +0.6 4,605,172 + MPMX20_04411 0.43 -0.2 4,605,172 + MPMX20_04411 0.43 +0.1 4,605,172 + MPMX20_04411 0.43 -0.7 4,605,172 + MPMX20_04411 0.43 -1.6 4,605,180 - MPMX20_04411 0.44 -0.2 4,605,180 - MPMX20_04411 0.44 +0.6 4,605,180 - MPMX20_04411 0.44 +2.1 4,605,185 - MPMX20_04411 0.45 +0.2 4,605,218 + MPMX20_04411 0.48 +0.4 4,605,228 + MPMX20_04411 0.49 -0.0 4,605,277 - MPMX20_04411 0.55 +0.2 4,605,284 + MPMX20_04411 0.55 -0.0 4,605,284 + MPMX20_04411 0.55 +0.6 4,605,284 + MPMX20_04411 0.55 -1.2 4,605,292 - MPMX20_04411 0.56 -0.2 4,605,295 + MPMX20_04411 0.57 +0.6 4,605,295 + MPMX20_04411 0.57 +0.4 4,605,295 + MPMX20_04411 0.57 -1.5 4,605,295 + MPMX20_04411 0.57 +0.4 4,605,295 + MPMX20_04411 0.57 -0.4 4,605,303 - MPMX20_04411 0.57 -0.1 4,605,303 - MPMX20_04411 0.57 +1.3 4,605,303 - MPMX20_04411 0.57 +3.4 4,605,323 + MPMX20_04411 0.60 -1.0 4,605,404 + MPMX20_04411 0.68 -1.8 4,605,444 - MPMX20_04411 0.73 +0.7 4,605,457 + MPMX20_04411 0.74 +0.0 4,605,568 + MPMX20_04411 0.86 -0.6 4,605,795 - +0.7 4,605,883 - -0.3 4,605,923 + MPMX20_04412 0.12 -0.7 4,605,965 - MPMX20_04412 0.15 -0.6 4,605,965 - MPMX20_04412 0.15 -1.4 4,605,978 + MPMX20_04412 0.16 -1.4 4,605,986 - MPMX20_04412 0.16 -1.2 4,606,015 + MPMX20_04412 0.18 -0.8 4,606,023 - MPMX20_04412 0.19 -1.7 4,606,081 - MPMX20_04412 0.23 -0.3 4,606,105 - MPMX20_04412 0.24 -0.7 4,606,118 + MPMX20_04412 0.25 +0.2 4,606,144 - MPMX20_04412 0.27 -1.5 4,606,246 - MPMX20_04412 0.34 -0.3 4,606,246 - MPMX20_04412 0.34 -1.7 4,606,256 - MPMX20_04412 0.34 -2.7 4,606,288 + MPMX20_04412 0.37 -1.3 4,606,313 + MPMX20_04412 0.38 -1.8 4,606,313 + MPMX20_04412 0.38 +1.1 4,606,313 + MPMX20_04412 0.38 -1.7 4,606,321 - MPMX20_04412 0.39 +1.3 4,606,391 + MPMX20_04412 0.43 -0.4 4,606,391 - MPMX20_04412 0.43 -2.1 4,606,399 - MPMX20_04412 0.44 -0.2 4,606,460 - MPMX20_04412 0.48 +0.5 4,606,526 + MPMX20_04412 0.52 -0.6 4,606,531 + MPMX20_04412 0.53 -2.4 4,606,536 + MPMX20_04412 0.53 -1.1 4,606,545 + MPMX20_04412 0.54 -1.0 4,606,553 - MPMX20_04412 0.54 -1.5 4,606,553 - MPMX20_04412 0.54 -1.1 4,606,560 - MPMX20_04412 0.55 -0.8 4,606,560 - MPMX20_04412 0.55 -0.4 4,606,595 - MPMX20_04412 0.57 +1.1 4,606,662 + MPMX20_04412 0.62 -0.7 4,606,667 + MPMX20_04412 0.62 -0.7 4,606,677 + MPMX20_04412 0.63 -1.4 4,606,685 - MPMX20_04412 0.63 +0.9 4,606,685 - MPMX20_04412 0.63 -0.2 4,606,685 - MPMX20_04412 0.63 +1.1
Or see this region's nucleotide sequence