Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03524 and MPMX20_03525 overlap by 20 nucleotides MPMX20_03525 and MPMX20_03526 are separated by 171 nucleotides MPMX20_03526 and MPMX20_03527 overlap by 29 nucleotides
MPMX20_03524: MPMX20_03524 - Vitamin B12 import ATP-binding protein BtuD, at 3,719,372 to 3,721,570
_03524
MPMX20_03525: MPMX20_03525 - Type I secretion system membrane fusion protein PrsE, at 3,721,551 to 3,722,750
_03525
MPMX20_03526: MPMX20_03526 - Nucleoside triphosphatase NudI, at 3,722,922 to 3,723,347
_03526
MPMX20_03527: MPMX20_03527 - HTH-type transcriptional regulator NimR, at 3,723,319 to 3,724,077
_03527
Position (kb)
3721
3722
3723 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 3720.571 kb on + strand, within MPMX20_03524 at 3720.571 kb on + strand, within MPMX20_03524 at 3720.575 kb on - strand, within MPMX20_03524 at 3720.579 kb on - strand, within MPMX20_03524 at 3720.579 kb on - strand, within MPMX20_03524 at 3720.689 kb on - strand, within MPMX20_03524 at 3720.704 kb on - strand, within MPMX20_03524 at 3720.718 kb on + strand, within MPMX20_03524 at 3720.747 kb on + strand, within MPMX20_03524 at 3720.747 kb on + strand, within MPMX20_03524 at 3720.747 kb on + strand, within MPMX20_03524 at 3720.747 kb on + strand, within MPMX20_03524 at 3720.755 kb on - strand, within MPMX20_03524 at 3720.755 kb on - strand, within MPMX20_03524 at 3720.803 kb on + strand, within MPMX20_03524 at 3720.813 kb on + strand, within MPMX20_03524 at 3720.844 kb on - strand, within MPMX20_03524 at 3720.869 kb on + strand, within MPMX20_03524 at 3720.869 kb on + strand, within MPMX20_03524 at 3720.877 kb on - strand, within MPMX20_03524 at 3720.877 kb on - strand, within MPMX20_03524 at 3720.900 kb on - strand, within MPMX20_03524 at 3721.032 kb on - strand, within MPMX20_03524 at 3721.032 kb on - strand, within MPMX20_03524 at 3721.094 kb on - strand, within MPMX20_03524 at 3721.117 kb on - strand, within MPMX20_03524 at 3721.198 kb on + strand, within MPMX20_03524 at 3721.199 kb on + strand, within MPMX20_03524 at 3721.199 kb on + strand, within MPMX20_03524 at 3721.199 kb on + strand, within MPMX20_03524 at 3721.207 kb on - strand, within MPMX20_03524 at 3721.207 kb on - strand, within MPMX20_03524 at 3721.207 kb on - strand, within MPMX20_03524 at 3721.207 kb on - strand, within MPMX20_03524 at 3721.207 kb on - strand, within MPMX20_03524 at 3721.207 kb on - strand, within MPMX20_03524 at 3721.225 kb on - strand, within MPMX20_03524 at 3721.232 kb on + strand, within MPMX20_03524 at 3721.240 kb on - strand, within MPMX20_03524 at 3721.293 kb on + strand, within MPMX20_03524 at 3721.293 kb on + strand, within MPMX20_03524 at 3721.296 kb on - strand, within MPMX20_03524 at 3721.366 kb on + strand at 3721.388 kb on - strand at 3721.530 kb on - strand at 3721.721 kb on + strand, within MPMX20_03525 at 3721.779 kb on - strand, within MPMX20_03525 at 3721.817 kb on + strand, within MPMX20_03525 at 3721.846 kb on - strand, within MPMX20_03525 at 3721.888 kb on + strand, within MPMX20_03525 at 3721.909 kb on + strand, within MPMX20_03525 at 3721.909 kb on - strand, within MPMX20_03525 at 3722.015 kb on - strand, within MPMX20_03525 at 3722.024 kb on + strand, within MPMX20_03525 at 3722.032 kb on + strand, within MPMX20_03525 at 3722.032 kb on - strand, within MPMX20_03525 at 3722.055 kb on + strand, within MPMX20_03525 at 3722.063 kb on - strand, within MPMX20_03525 at 3722.131 kb on - strand, within MPMX20_03525 at 3722.187 kb on + strand, within MPMX20_03525 at 3722.199 kb on + strand, within MPMX20_03525 at 3722.205 kb on - strand, within MPMX20_03525 at 3722.214 kb on + strand, within MPMX20_03525 at 3722.375 kb on + strand, within MPMX20_03525 at 3722.383 kb on - strand, within MPMX20_03525 at 3722.447 kb on - strand, within MPMX20_03525 at 3722.481 kb on + strand, within MPMX20_03525 at 3722.528 kb on - strand, within MPMX20_03525 at 3722.535 kb on - strand, within MPMX20_03525 at 3722.544 kb on + strand, within MPMX20_03525 at 3722.544 kb on + strand, within MPMX20_03525 at 3722.544 kb on + strand, within MPMX20_03525 at 3722.544 kb on + strand, within MPMX20_03525 at 3722.568 kb on - strand, within MPMX20_03525 at 3722.598 kb on + strand, within MPMX20_03525 at 3722.598 kb on + strand, within MPMX20_03525 at 3722.598 kb on + strand, within MPMX20_03525 at 3722.603 kb on + strand, within MPMX20_03525 at 3722.603 kb on + strand, within MPMX20_03525 at 3722.606 kb on - strand, within MPMX20_03525 at 3722.611 kb on - strand, within MPMX20_03525 at 3722.623 kb on - strand, within MPMX20_03525 at 3722.641 kb on - strand at 3722.641 kb on - strand at 3722.669 kb on + strand at 3722.677 kb on - strand at 3722.677 kb on - strand at 3722.696 kb on + strand at 3722.722 kb on - strand at 3722.752 kb on - strand at 3722.757 kb on - strand at 3722.790 kb on - strand at 3722.800 kb on - strand at 3722.801 kb on - strand at 3722.820 kb on + strand at 3722.830 kb on + strand at 3722.830 kb on + strand at 3722.830 kb on + strand at 3722.838 kb on - strand at 3722.858 kb on + strand at 3722.866 kb on - strand at 3723.037 kb on + strand, within MPMX20_03526 at 3723.045 kb on - strand, within MPMX20_03526 at 3723.098 kb on - strand, within MPMX20_03526 at 3723.098 kb on - strand, within MPMX20_03526 at 3723.105 kb on + strand, within MPMX20_03526 at 3723.119 kb on + strand, within MPMX20_03526 at 3723.120 kb on + strand, within MPMX20_03526 at 3723.125 kb on + strand, within MPMX20_03526 at 3723.128 kb on - strand, within MPMX20_03526 at 3723.214 kb on + strand, within MPMX20_03526 at 3723.258 kb on - strand, within MPMX20_03526 at 3723.282 kb on - strand, within MPMX20_03526 at 3723.305 kb on - strand at 3723.309 kb on + strand at 3723.419 kb on + strand, within MPMX20_03527 at 3723.468 kb on + strand, within MPMX20_03527 at 3723.543 kb on + strand, within MPMX20_03527 at 3723.580 kb on + strand, within MPMX20_03527 at 3723.588 kb on - strand, within MPMX20_03527 at 3723.588 kb on - strand, within MPMX20_03527 at 3723.588 kb on - strand, within MPMX20_03527 at 3723.677 kb on + strand, within MPMX20_03527 at 3723.683 kb on - strand, within MPMX20_03527 at 3723.702 kb on + strand, within MPMX20_03527
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 3,720,571 + MPMX20_03524 0.55 -0.7 3,720,571 + MPMX20_03524 0.55 -0.7 3,720,575 - MPMX20_03524 0.55 +0.5 3,720,579 - MPMX20_03524 0.55 -1.2 3,720,579 - MPMX20_03524 0.55 -1.1 3,720,689 - MPMX20_03524 0.60 +0.3 3,720,704 - MPMX20_03524 0.61 -0.1 3,720,718 + MPMX20_03524 0.61 +0.5 3,720,747 + MPMX20_03524 0.63 -1.5 3,720,747 + MPMX20_03524 0.63 -1.8 3,720,747 + MPMX20_03524 0.63 +0.6 3,720,747 + MPMX20_03524 0.63 -0.5 3,720,755 - MPMX20_03524 0.63 -1.6 3,720,755 - MPMX20_03524 0.63 -1.7 3,720,803 + MPMX20_03524 0.65 -1.2 3,720,813 + MPMX20_03524 0.66 -1.2 3,720,844 - MPMX20_03524 0.67 -1.6 3,720,869 + MPMX20_03524 0.68 +0.4 3,720,869 + MPMX20_03524 0.68 -0.8 3,720,877 - MPMX20_03524 0.68 -1.5 3,720,877 - MPMX20_03524 0.68 -1.1 3,720,900 - MPMX20_03524 0.69 +0.2 3,721,032 - MPMX20_03524 0.75 -1.3 3,721,032 - MPMX20_03524 0.75 +0.1 3,721,094 - MPMX20_03524 0.78 +0.3 3,721,117 - MPMX20_03524 0.79 -0.7 3,721,198 + MPMX20_03524 0.83 -0.5 3,721,199 + MPMX20_03524 0.83 -0.8 3,721,199 + MPMX20_03524 0.83 -0.9 3,721,199 + MPMX20_03524 0.83 -3.2 3,721,207 - MPMX20_03524 0.83 -2.2 3,721,207 - MPMX20_03524 0.83 -0.6 3,721,207 - MPMX20_03524 0.83 -0.7 3,721,207 - MPMX20_03524 0.83 -0.8 3,721,207 - MPMX20_03524 0.83 +0.5 3,721,207 - MPMX20_03524 0.83 -1.7 3,721,225 - MPMX20_03524 0.84 -0.1 3,721,232 + MPMX20_03524 0.85 -0.9 3,721,240 - MPMX20_03524 0.85 -1.2 3,721,293 + MPMX20_03524 0.87 +1.2 3,721,293 + MPMX20_03524 0.87 -0.9 3,721,296 - MPMX20_03524 0.87 +1.7 3,721,366 + -1.0 3,721,388 - -0.8 3,721,530 - -0.5 3,721,721 + MPMX20_03525 0.14 -2.4 3,721,779 - MPMX20_03525 0.19 -0.7 3,721,817 + MPMX20_03525 0.22 +0.2 3,721,846 - MPMX20_03525 0.25 -1.3 3,721,888 + MPMX20_03525 0.28 -0.7 3,721,909 + MPMX20_03525 0.30 +0.1 3,721,909 - MPMX20_03525 0.30 -3.2 3,722,015 - MPMX20_03525 0.39 -1.3 3,722,024 + MPMX20_03525 0.39 -0.4 3,722,032 + MPMX20_03525 0.40 -2.4 3,722,032 - MPMX20_03525 0.40 -1.6 3,722,055 + MPMX20_03525 0.42 -0.7 3,722,063 - MPMX20_03525 0.43 -0.9 3,722,131 - MPMX20_03525 0.48 -0.7 3,722,187 + MPMX20_03525 0.53 -1.0 3,722,199 + MPMX20_03525 0.54 +0.6 3,722,205 - MPMX20_03525 0.55 -1.4 3,722,214 + MPMX20_03525 0.55 -3.3 3,722,375 + MPMX20_03525 0.69 +0.5 3,722,383 - MPMX20_03525 0.69 -0.9 3,722,447 - MPMX20_03525 0.75 -1.5 3,722,481 + MPMX20_03525 0.78 -2.7 3,722,528 - MPMX20_03525 0.81 -0.9 3,722,535 - MPMX20_03525 0.82 -0.6 3,722,544 + MPMX20_03525 0.83 -0.8 3,722,544 + MPMX20_03525 0.83 -2.0 3,722,544 + MPMX20_03525 0.83 -1.7 3,722,544 + MPMX20_03525 0.83 -0.1 3,722,568 - MPMX20_03525 0.85 -3.2 3,722,598 + MPMX20_03525 0.87 -1.9 3,722,598 + MPMX20_03525 0.87 -0.6 3,722,598 + MPMX20_03525 0.87 -3.6 3,722,603 + MPMX20_03525 0.88 -2.1 3,722,603 + MPMX20_03525 0.88 -0.8 3,722,606 - MPMX20_03525 0.88 -1.9 3,722,611 - MPMX20_03525 0.88 -0.9 3,722,623 - MPMX20_03525 0.89 -0.9 3,722,641 - -1.2 3,722,641 - -1.6 3,722,669 + -1.0 3,722,677 - -0.6 3,722,677 - -2.1 3,722,696 + -1.8 3,722,722 - -1.4 3,722,752 - -2.6 3,722,757 - +0.9 3,722,790 - +1.5 3,722,800 - -0.2 3,722,801 - +0.2 3,722,820 + -2.0 3,722,830 + -0.0 3,722,830 + +1.1 3,722,830 + -1.3 3,722,838 - -1.1 3,722,858 + +0.1 3,722,866 - -1.3 3,723,037 + MPMX20_03526 0.27 +1.3 3,723,045 - MPMX20_03526 0.29 -0.4 3,723,098 - MPMX20_03526 0.41 +5.5 3,723,098 - MPMX20_03526 0.41 -0.3 3,723,105 + MPMX20_03526 0.43 +0.5 3,723,119 + MPMX20_03526 0.46 +0.1 3,723,120 + MPMX20_03526 0.46 +0.0 3,723,125 + MPMX20_03526 0.48 -0.6 3,723,128 - MPMX20_03526 0.48 +1.0 3,723,214 + MPMX20_03526 0.69 +1.6 3,723,258 - MPMX20_03526 0.79 +1.1 3,723,282 - MPMX20_03526 0.85 -0.2 3,723,305 - -1.3 3,723,309 + -1.6 3,723,419 + MPMX20_03527 0.13 +0.7 3,723,468 + MPMX20_03527 0.20 +0.5 3,723,543 + MPMX20_03527 0.30 -0.5 3,723,580 + MPMX20_03527 0.34 +0.1 3,723,588 - MPMX20_03527 0.35 +0.6 3,723,588 - MPMX20_03527 0.35 -1.1 3,723,588 - MPMX20_03527 0.35 +1.5 3,723,677 + MPMX20_03527 0.47 -0.9 3,723,683 - MPMX20_03527 0.48 +1.3 3,723,702 + MPMX20_03527 0.50 -1.5
Or see this region's nucleotide sequence