Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01615

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01613 and MPMX20_01614 are separated by 80 nucleotidesMPMX20_01614 and MPMX20_01615 are separated by 25 nucleotidesMPMX20_01615 and MPMX20_01616 are separated by 34 nucleotidesMPMX20_01616 and MPMX20_01617 are separated by 60 nucleotides MPMX20_01613: MPMX20_01613 - Methylglyoxal synthase, at 1,706,912 to 1,707,370 _01613 MPMX20_01614: MPMX20_01614 - hypothetical protein, at 1,707,451 to 1,708,260 _01614 MPMX20_01615: MPMX20_01615 - putative protein YccU, at 1,708,286 to 1,708,702 _01615 MPMX20_01616: MPMX20_01616 - Heat shock protein HspQ, at 1,708,737 to 1,709,054 _01616 MPMX20_01617: MPMX20_01617 - Ribosomal RNA large subunit methyltransferase I, at 1,709,115 to 1,710,305 _01617 Position (kb) 1708 1709Strain fitness (log2 ratio) -2 -1 0 1 2at 1707.293 kb on - strand, within MPMX20_01613at 1707.329 kb on - strandat 1707.385 kb on + strandat 1707.393 kb on - strandat 1707.468 kb on + strandat 1707.476 kb on - strandat 1707.602 kb on - strand, within MPMX20_01614at 1707.628 kb on + strand, within MPMX20_01614at 1707.643 kb on + strand, within MPMX20_01614at 1707.709 kb on - strand, within MPMX20_01614at 1707.712 kb on + strand, within MPMX20_01614at 1707.770 kb on - strand, within MPMX20_01614at 1707.779 kb on + strand, within MPMX20_01614at 1707.827 kb on + strand, within MPMX20_01614at 1707.827 kb on + strand, within MPMX20_01614at 1707.835 kb on - strand, within MPMX20_01614at 1707.851 kb on + strand, within MPMX20_01614at 1707.878 kb on + strand, within MPMX20_01614at 1707.902 kb on - strand, within MPMX20_01614at 1707.951 kb on - strand, within MPMX20_01614at 1708.041 kb on + strand, within MPMX20_01614at 1708.191 kb on - strandat 1708.210 kb on - strandat 1708.255 kb on - strandat 1708.302 kb on - strandat 1708.347 kb on - strand, within MPMX20_01615at 1708.379 kb on - strand, within MPMX20_01615at 1708.390 kb on - strand, within MPMX20_01615at 1708.419 kb on - strand, within MPMX20_01615at 1708.419 kb on - strand, within MPMX20_01615at 1708.462 kb on + strand, within MPMX20_01615at 1708.462 kb on + strand, within MPMX20_01615at 1708.462 kb on + strand, within MPMX20_01615at 1708.462 kb on + strand, within MPMX20_01615at 1708.470 kb on - strand, within MPMX20_01615at 1708.604 kb on - strand, within MPMX20_01615at 1708.643 kb on - strand, within MPMX20_01615at 1708.680 kb on + strandat 1708.766 kb on - strandat 1708.841 kb on - strand, within MPMX20_01616at 1708.860 kb on - strand, within MPMX20_01616at 1709.083 kb on + strandat 1709.106 kb on - strandat 1709.162 kb on + strandat 1709.186 kb on - strandat 1709.209 kb on - strandat 1709.279 kb on + strand, within MPMX20_01617at 1709.295 kb on + strand, within MPMX20_01617at 1709.303 kb on - strand, within MPMX20_01617at 1709.303 kb on - strand, within MPMX20_01617at 1709.322 kb on - strand, within MPMX20_01617at 1709.348 kb on + strand, within MPMX20_01617at 1709.365 kb on + strand, within MPMX20_01617at 1709.506 kb on - strand, within MPMX20_01617at 1709.570 kb on + strand, within MPMX20_01617at 1709.578 kb on - strand, within MPMX20_01617at 1709.581 kb on - strand, within MPMX20_01617at 1709.655 kb on - strand, within MPMX20_01617at 1709.684 kb on + strand, within MPMX20_01617at 1709.684 kb on + strand, within MPMX20_01617at 1709.684 kb on + strand, within MPMX20_01617at 1709.684 kb on + strand, within MPMX20_01617at 1709.684 kb on + strand, within MPMX20_01617at 1709.692 kb on - strand, within MPMX20_01617at 1709.692 kb on - strand, within MPMX20_01617

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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1,707,293 - MPMX20_01613 0.83 -0.9
1,707,329 - -1.7
1,707,385 + +0.4
1,707,393 - +0.8
1,707,468 + +0.0
1,707,476 - -1.4
1,707,602 - MPMX20_01614 0.19 +0.3
1,707,628 + MPMX20_01614 0.22 -1.3
1,707,643 + MPMX20_01614 0.24 -0.0
1,707,709 - MPMX20_01614 0.32 +0.4
1,707,712 + MPMX20_01614 0.32 -0.5
1,707,770 - MPMX20_01614 0.39 -1.1
1,707,779 + MPMX20_01614 0.40 +0.2
1,707,827 + MPMX20_01614 0.46 -1.4
1,707,827 + MPMX20_01614 0.46 +0.6
1,707,835 - MPMX20_01614 0.47 -1.6
1,707,851 + MPMX20_01614 0.49 -0.9
1,707,878 + MPMX20_01614 0.53 -0.2
1,707,902 - MPMX20_01614 0.56 -0.6
1,707,951 - MPMX20_01614 0.62 +0.5
1,708,041 + MPMX20_01614 0.73 -0.6
1,708,191 - -0.3
1,708,210 - +1.0
1,708,255 - +0.9
1,708,302 - +1.2
1,708,347 - MPMX20_01615 0.15 -1.8
1,708,379 - MPMX20_01615 0.22 -0.8
1,708,390 - MPMX20_01615 0.25 +0.2
1,708,419 - MPMX20_01615 0.32 +0.1
1,708,419 - MPMX20_01615 0.32 +1.0
1,708,462 + MPMX20_01615 0.42 +1.2
1,708,462 + MPMX20_01615 0.42 -1.2
1,708,462 + MPMX20_01615 0.42 -0.2
1,708,462 + MPMX20_01615 0.42 -1.2
1,708,470 - MPMX20_01615 0.44 +0.7
1,708,604 - MPMX20_01615 0.76 +0.8
1,708,643 - MPMX20_01615 0.86 -1.3
1,708,680 + +1.2
1,708,766 - -0.0
1,708,841 - MPMX20_01616 0.33 +0.4
1,708,860 - MPMX20_01616 0.39 +0.3
1,709,083 + -0.1
1,709,106 - -0.5
1,709,162 + +0.3
1,709,186 - +0.2
1,709,209 - +0.1
1,709,279 + MPMX20_01617 0.14 -0.6
1,709,295 + MPMX20_01617 0.15 -0.1
1,709,303 - MPMX20_01617 0.16 +2.4
1,709,303 - MPMX20_01617 0.16 +0.5
1,709,322 - MPMX20_01617 0.17 -0.2
1,709,348 + MPMX20_01617 0.20 -0.1
1,709,365 + MPMX20_01617 0.21 +0.0
1,709,506 - MPMX20_01617 0.33 -0.4
1,709,570 + MPMX20_01617 0.38 -0.1
1,709,578 - MPMX20_01617 0.39 +0.1
1,709,581 - MPMX20_01617 0.39 +0.1
1,709,655 - MPMX20_01617 0.45 -0.9
1,709,684 + MPMX20_01617 0.48 +0.8
1,709,684 + MPMX20_01617 0.48 +1.3
1,709,684 + MPMX20_01617 0.48 -1.8
1,709,684 + MPMX20_01617 0.48 -0.2
1,709,684 + MPMX20_01617 0.48 -0.1
1,709,692 - MPMX20_01617 0.48 -0.5
1,709,692 - MPMX20_01617 0.48 -0.5

Or see this region's nucleotide sequence