Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00023

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00020 and MPMX20_00021 are separated by 91 nucleotidesMPMX20_00021 and MPMX20_00022 overlap by 11 nucleotidesMPMX20_00022 and MPMX20_00023 overlap by 17 nucleotidesMPMX20_00023 and MPMX20_00024 are separated by 17 nucleotides MPMX20_00020: MPMX20_00020 - 6-phospho-alpha-glucosidase, at 21,423 to 22,745 _00020 MPMX20_00021: MPMX20_00021 - Inner membrane protein YidH, at 22,837 to 23,184 _00021 MPMX20_00022: MPMX20_00022 - Inner membrane protein YidG, at 23,174 to 23,521 _00022 MPMX20_00023: MPMX20_00023 - D-serine dehydratase, at 23,505 to 24,797 _00023 MPMX20_00024: MPMX20_00024 - D-serine transporter DsdX, at 24,815 to 26,152 _00024 Position (kb) 23 24 25Strain fitness (log2 ratio) -3 -2 -1 0 1at 22.527 kb on - strand, within MPMX20_00020at 22.527 kb on - strand, within MPMX20_00020at 22.536 kb on - strand, within MPMX20_00020at 22.545 kb on + strand, within MPMX20_00020at 22.571 kb on - strand, within MPMX20_00020at 22.609 kb on + strand, within MPMX20_00020at 22.609 kb on + strand, within MPMX20_00020at 22.609 kb on + strand, within MPMX20_00020at 22.609 kb on + strand, within MPMX20_00020at 22.653 kb on - strandat 22.655 kb on + strandat 22.655 kb on + strandat 22.655 kb on + strandat 22.663 kb on - strandat 22.724 kb on + strandat 22.724 kb on + strandat 22.737 kb on - strandat 22.811 kb on - strandat 22.861 kb on + strandat 22.919 kb on - strand, within MPMX20_00021at 22.929 kb on - strand, within MPMX20_00021at 22.942 kb on + strand, within MPMX20_00021at 22.942 kb on + strand, within MPMX20_00021at 22.942 kb on + strand, within MPMX20_00021at 22.950 kb on - strand, within MPMX20_00021at 22.950 kb on - strand, within MPMX20_00021at 22.950 kb on - strand, within MPMX20_00021at 22.957 kb on - strand, within MPMX20_00021at 22.989 kb on - strand, within MPMX20_00021at 22.989 kb on - strand, within MPMX20_00021at 22.996 kb on + strand, within MPMX20_00021at 22.996 kb on + strand, within MPMX20_00021at 22.996 kb on + strand, within MPMX20_00021at 23.004 kb on - strand, within MPMX20_00021at 23.169 kb on + strandat 23.234 kb on + strand, within MPMX20_00022at 23.320 kb on - strand, within MPMX20_00022at 23.430 kb on - strand, within MPMX20_00022at 23.430 kb on - strand, within MPMX20_00022at 23.501 kb on - strandat 23.538 kb on - strandat 23.572 kb on - strandat 23.574 kb on + strandat 23.574 kb on + strandat 23.583 kb on + strandat 23.713 kb on + strand, within MPMX20_00023at 23.713 kb on + strand, within MPMX20_00023at 23.848 kb on - strand, within MPMX20_00023at 23.848 kb on - strand, within MPMX20_00023at 23.874 kb on + strand, within MPMX20_00023at 23.975 kb on - strand, within MPMX20_00023at 23.987 kb on - strand, within MPMX20_00023at 24.050 kb on + strand, within MPMX20_00023at 24.060 kb on - strand, within MPMX20_00023at 24.066 kb on - strand, within MPMX20_00023at 24.124 kb on - strand, within MPMX20_00023at 24.148 kb on + strand, within MPMX20_00023at 24.148 kb on + strand, within MPMX20_00023at 24.148 kb on + strand, within MPMX20_00023at 24.148 kb on + strand, within MPMX20_00023at 24.148 kb on + strand, within MPMX20_00023at 24.148 kb on + strand, within MPMX20_00023at 24.156 kb on - strand, within MPMX20_00023at 24.156 kb on - strand, within MPMX20_00023at 24.179 kb on + strand, within MPMX20_00023at 24.182 kb on - strand, within MPMX20_00023at 24.228 kb on + strand, within MPMX20_00023at 24.236 kb on - strand, within MPMX20_00023at 24.236 kb on - strand, within MPMX20_00023at 24.242 kb on + strand, within MPMX20_00023at 24.250 kb on - strand, within MPMX20_00023at 24.318 kb on - strand, within MPMX20_00023at 24.386 kb on - strand, within MPMX20_00023at 24.386 kb on - strand, within MPMX20_00023at 24.414 kb on + strand, within MPMX20_00023at 24.422 kb on + strand, within MPMX20_00023at 24.451 kb on - strand, within MPMX20_00023at 24.460 kb on - strand, within MPMX20_00023at 24.509 kb on + strand, within MPMX20_00023at 24.509 kb on + strand, within MPMX20_00023at 24.509 kb on + strand, within MPMX20_00023at 24.517 kb on - strand, within MPMX20_00023at 24.539 kb on - strand, within MPMX20_00023at 24.658 kb on + strand, within MPMX20_00023at 24.668 kb on + strandat 24.671 kb on - strandat 24.673 kb on + strandat 24.692 kb on - strandat 24.710 kb on + strandat 24.710 kb on + strandat 24.710 kb on + strandat 24.718 kb on - strandat 24.887 kb on - strandat 25.008 kb on - strand, within MPMX20_00024at 25.020 kb on - strand, within MPMX20_00024at 25.020 kb on - strand, within MPMX20_00024at 25.087 kb on - strand, within MPMX20_00024at 25.091 kb on + strand, within MPMX20_00024at 25.118 kb on + strand, within MPMX20_00024at 25.134 kb on + strand, within MPMX20_00024at 25.134 kb on + strand, within MPMX20_00024at 25.164 kb on + strand, within MPMX20_00024at 25.164 kb on - strand, within MPMX20_00024at 25.165 kb on - strand, within MPMX20_00024at 25.251 kb on - strand, within MPMX20_00024at 25.273 kb on - strand, within MPMX20_00024at 25.273 kb on - strand, within MPMX20_00024at 25.306 kb on + strand, within MPMX20_00024at 25.308 kb on - strand, within MPMX20_00024at 25.309 kb on + strand, within MPMX20_00024at 25.309 kb on + strand, within MPMX20_00024at 25.336 kb on + strand, within MPMX20_00024at 25.337 kb on - strand, within MPMX20_00024at 25.418 kb on - strand, within MPMX20_00024at 25.457 kb on - strand, within MPMX20_00024at 25.527 kb on + strand, within MPMX20_00024at 25.527 kb on + strand, within MPMX20_00024at 25.628 kb on - strand, within MPMX20_00024at 25.650 kb on + strand, within MPMX20_00024at 25.686 kb on - strand, within MPMX20_00024at 25.686 kb on - strand, within MPMX20_00024at 25.688 kb on + strand, within MPMX20_00024at 25.696 kb on - strand, within MPMX20_00024at 25.707 kb on + strand, within MPMX20_00024at 25.707 kb on + strand, within MPMX20_00024at 25.715 kb on - strand, within MPMX20_00024at 25.715 kb on - strand, within MPMX20_00024at 25.748 kb on - strand, within MPMX20_00024

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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22,527 - MPMX20_00020 0.83 -0.2
22,527 - MPMX20_00020 0.83 +0.2
22,536 - MPMX20_00020 0.84 -0.6
22,545 + MPMX20_00020 0.85 +0.1
22,571 - MPMX20_00020 0.87 -0.1
22,609 + MPMX20_00020 0.90 -0.3
22,609 + MPMX20_00020 0.90 +0.2
22,609 + MPMX20_00020 0.90 -0.4
22,609 + MPMX20_00020 0.90 +0.8
22,653 - +0.0
22,655 + +1.2
22,655 + +0.4
22,655 + -0.4
22,663 - -0.5
22,724 + +0.7
22,724 + +1.6
22,737 - -2.0
22,811 - -0.2
22,861 + +0.9
22,919 - MPMX20_00021 0.24 -0.8
22,929 - MPMX20_00021 0.26 -0.2
22,942 + MPMX20_00021 0.30 -1.7
22,942 + MPMX20_00021 0.30 -0.1
22,942 + MPMX20_00021 0.30 -1.5
22,950 - MPMX20_00021 0.32 +0.3
22,950 - MPMX20_00021 0.32 +0.2
22,950 - MPMX20_00021 0.32 -0.0
22,957 - MPMX20_00021 0.34 -1.7
22,989 - MPMX20_00021 0.44 -1.1
22,989 - MPMX20_00021 0.44 +1.6
22,996 + MPMX20_00021 0.46 -0.7
22,996 + MPMX20_00021 0.46 -0.8
22,996 + MPMX20_00021 0.46 -0.5
23,004 - MPMX20_00021 0.48 -1.0
23,169 + -1.8
23,234 + MPMX20_00022 0.17 +1.0
23,320 - MPMX20_00022 0.42 -0.4
23,430 - MPMX20_00022 0.74 +0.0
23,430 - MPMX20_00022 0.74 +0.8
23,501 - +1.0
23,538 - -0.8
23,572 - -2.0
23,574 + -0.0
23,574 + -1.9
23,583 + +1.3
23,713 + MPMX20_00023 0.16 -1.1
23,713 + MPMX20_00023 0.16 -1.4
23,848 - MPMX20_00023 0.27 -0.0
23,848 - MPMX20_00023 0.27 -1.6
23,874 + MPMX20_00023 0.29 +0.6
23,975 - MPMX20_00023 0.36 -0.3
23,987 - MPMX20_00023 0.37 -2.5
24,050 + MPMX20_00023 0.42 -1.6
24,060 - MPMX20_00023 0.43 -0.3
24,066 - MPMX20_00023 0.43 -1.1
24,124 - MPMX20_00023 0.48 -0.0
24,148 + MPMX20_00023 0.50 +0.2
24,148 + MPMX20_00023 0.50 -2.3
24,148 + MPMX20_00023 0.50 -2.0
24,148 + MPMX20_00023 0.50 -2.9
24,148 + MPMX20_00023 0.50 -1.3
24,148 + MPMX20_00023 0.50 -0.8
24,156 - MPMX20_00023 0.50 -0.9
24,156 - MPMX20_00023 0.50 -1.2
24,179 + MPMX20_00023 0.52 -1.8
24,182 - MPMX20_00023 0.52 -0.9
24,228 + MPMX20_00023 0.56 +0.0
24,236 - MPMX20_00023 0.57 -0.4
24,236 - MPMX20_00023 0.57 -3.4
24,242 + MPMX20_00023 0.57 -1.6
24,250 - MPMX20_00023 0.58 +0.0
24,318 - MPMX20_00023 0.63 -0.8
24,386 - MPMX20_00023 0.68 -1.2
24,386 - MPMX20_00023 0.68 -2.9
24,414 + MPMX20_00023 0.70 -1.5
24,422 + MPMX20_00023 0.71 -1.0
24,451 - MPMX20_00023 0.73 -0.1
24,460 - MPMX20_00023 0.74 -1.2
24,509 + MPMX20_00023 0.78 -1.3
24,509 + MPMX20_00023 0.78 -1.8
24,509 + MPMX20_00023 0.78 -2.1
24,517 - MPMX20_00023 0.78 -2.8
24,539 - MPMX20_00023 0.80 -1.7
24,658 + MPMX20_00023 0.89 -1.6
24,668 + -1.5
24,671 - -0.6
24,673 + -2.2
24,692 - +0.1
24,710 + -2.5
24,710 + +1.6
24,710 + -0.9
24,718 - +0.1
24,887 - -0.3
25,008 - MPMX20_00024 0.14 +0.1
25,020 - MPMX20_00024 0.15 -0.9
25,020 - MPMX20_00024 0.15 +0.8
25,087 - MPMX20_00024 0.20 -0.4
25,091 + MPMX20_00024 0.21 -2.4
25,118 + MPMX20_00024 0.23 +0.0
25,134 + MPMX20_00024 0.24 -0.5
25,134 + MPMX20_00024 0.24 -0.9
25,164 + MPMX20_00024 0.26 +0.2
25,164 - MPMX20_00024 0.26 -0.7
25,165 - MPMX20_00024 0.26 -0.8
25,251 - MPMX20_00024 0.33 -0.4
25,273 - MPMX20_00024 0.34 +0.1
25,273 - MPMX20_00024 0.34 -0.5
25,306 + MPMX20_00024 0.37 -0.8
25,308 - MPMX20_00024 0.37 +1.2
25,309 + MPMX20_00024 0.37 -0.2
25,309 + MPMX20_00024 0.37 -0.2
25,336 + MPMX20_00024 0.39 -1.5
25,337 - MPMX20_00024 0.39 -2.8
25,418 - MPMX20_00024 0.45 -1.9
25,457 - MPMX20_00024 0.48 +0.8
25,527 + MPMX20_00024 0.53 -0.9
25,527 + MPMX20_00024 0.53 -0.8
25,628 - MPMX20_00024 0.61 -2.9
25,650 + MPMX20_00024 0.62 -0.3
25,686 - MPMX20_00024 0.65 -0.9
25,686 - MPMX20_00024 0.65 -0.3
25,688 + MPMX20_00024 0.65 -1.2
25,696 - MPMX20_00024 0.66 -2.1
25,707 + MPMX20_00024 0.67 -1.5
25,707 + MPMX20_00024 0.67 +0.5
25,715 - MPMX20_00024 0.67 -0.6
25,715 - MPMX20_00024 0.67 -1.1
25,748 - MPMX20_00024 0.70 -1.2

Or see this region's nucleotide sequence