Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03480

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03478 and MPMX20_03479 are separated by 18 nucleotidesMPMX20_03479 and MPMX20_03480 are separated by 190 nucleotidesMPMX20_03480 and MPMX20_03481 are separated by 91 nucleotides MPMX20_03478: MPMX20_03478 - Ribosome maturation factor RimM, at 3,667,956 to 3,668,492 _03478 MPMX20_03479: MPMX20_03479 - 30S ribosomal protein S16, at 3,668,511 to 3,668,759 _03479 MPMX20_03480: MPMX20_03480 - Signal recognition particle protein, at 3,668,950 to 3,670,311 _03480 MPMX20_03481: MPMX20_03481 - Inner membrane protein YpjD, at 3,670,403 to 3,671,269 _03481 Position (kb) 3668 3669 3670 3671Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3668.538 kb on - strand, within MPMX20_03479at 3668.538 kb on - strand, within MPMX20_03479at 3668.538 kb on - strand, within MPMX20_03479at 3668.900 kb on - strandat 3670.361 kb on - strandat 3670.382 kb on + strandat 3670.384 kb on - strandat 3670.418 kb on - strandat 3670.425 kb on - strandat 3670.431 kb on + strandat 3670.431 kb on + strandat 3670.431 kb on + strandat 3670.439 kb on - strandat 3670.439 kb on - strandat 3670.439 kb on - strandat 3670.521 kb on + strand, within MPMX20_03481at 3670.536 kb on + strand, within MPMX20_03481at 3670.536 kb on + strand, within MPMX20_03481at 3670.536 kb on + strand, within MPMX20_03481at 3670.539 kb on - strand, within MPMX20_03481at 3670.544 kb on - strand, within MPMX20_03481at 3670.670 kb on - strand, within MPMX20_03481at 3670.754 kb on - strand, within MPMX20_03481at 3670.771 kb on - strand, within MPMX20_03481at 3670.771 kb on - strand, within MPMX20_03481at 3670.780 kb on + strand, within MPMX20_03481at 3670.780 kb on + strand, within MPMX20_03481at 3670.793 kb on - strand, within MPMX20_03481at 3670.793 kb on - strand, within MPMX20_03481at 3670.824 kb on - strand, within MPMX20_03481at 3670.855 kb on - strand, within MPMX20_03481at 3670.865 kb on + strand, within MPMX20_03481at 3670.875 kb on - strand, within MPMX20_03481at 3670.889 kb on - strand, within MPMX20_03481at 3670.908 kb on + strand, within MPMX20_03481at 3670.908 kb on + strand, within MPMX20_03481at 3670.929 kb on - strand, within MPMX20_03481at 3670.929 kb on - strand, within MPMX20_03481at 3670.959 kb on + strand, within MPMX20_03481at 3670.984 kb on + strand, within MPMX20_03481at 3670.996 kb on + strand, within MPMX20_03481at 3671.020 kb on + strand, within MPMX20_03481at 3671.025 kb on + strand, within MPMX20_03481at 3671.028 kb on - strand, within MPMX20_03481at 3671.028 kb on - strand, within MPMX20_03481at 3671.040 kb on + strand, within MPMX20_03481at 3671.040 kb on + strand, within MPMX20_03481at 3671.040 kb on + strand, within MPMX20_03481at 3671.040 kb on + strand, within MPMX20_03481at 3671.052 kb on + strand, within MPMX20_03481at 3671.057 kb on + strand, within MPMX20_03481at 3671.057 kb on + strand, within MPMX20_03481at 3671.058 kb on - strand, within MPMX20_03481at 3671.113 kb on + strand, within MPMX20_03481at 3671.144 kb on - strand, within MPMX20_03481at 3671.202 kb on - strandat 3671.286 kb on + strandat 3671.299 kb on + strandat 3671.304 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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3,668,538 - MPMX20_03479 0.11 -2.2
3,668,538 - MPMX20_03479 0.11 +0.3
3,668,538 - MPMX20_03479 0.11 -0.3
3,668,900 - -2.0
3,670,361 - +0.4
3,670,382 + +0.1
3,670,384 - +0.2
3,670,418 - +1.3
3,670,425 - -0.7
3,670,431 + -0.3
3,670,431 + +0.4
3,670,431 + -1.0
3,670,439 - -0.4
3,670,439 - +0.6
3,670,439 - -0.4
3,670,521 + MPMX20_03481 0.14 +0.2
3,670,536 + MPMX20_03481 0.15 -2.4
3,670,536 + MPMX20_03481 0.15 -1.3
3,670,536 + MPMX20_03481 0.15 +0.9
3,670,539 - MPMX20_03481 0.16 -1.5
3,670,544 - MPMX20_03481 0.16 -0.3
3,670,670 - MPMX20_03481 0.31 -0.3
3,670,754 - MPMX20_03481 0.40 +0.0
3,670,771 - MPMX20_03481 0.42 -1.4
3,670,771 - MPMX20_03481 0.42 -3.3
3,670,780 + MPMX20_03481 0.43 -1.1
3,670,780 + MPMX20_03481 0.43 -3.9
3,670,793 - MPMX20_03481 0.45 -0.6
3,670,793 - MPMX20_03481 0.45 -0.3
3,670,824 - MPMX20_03481 0.49 +0.2
3,670,855 - MPMX20_03481 0.52 -1.1
3,670,865 + MPMX20_03481 0.53 -0.4
3,670,875 - MPMX20_03481 0.54 +0.2
3,670,889 - MPMX20_03481 0.56 -0.5
3,670,908 + MPMX20_03481 0.58 -0.1
3,670,908 + MPMX20_03481 0.58 -2.8
3,670,929 - MPMX20_03481 0.61 -0.6
3,670,929 - MPMX20_03481 0.61 +1.7
3,670,959 + MPMX20_03481 0.64 -1.2
3,670,984 + MPMX20_03481 0.67 -1.4
3,670,996 + MPMX20_03481 0.68 -1.9
3,671,020 + MPMX20_03481 0.71 -1.5
3,671,025 + MPMX20_03481 0.72 -1.7
3,671,028 - MPMX20_03481 0.72 -2.8
3,671,028 - MPMX20_03481 0.72 -1.0
3,671,040 + MPMX20_03481 0.73 +0.3
3,671,040 + MPMX20_03481 0.73 -1.5
3,671,040 + MPMX20_03481 0.73 -1.9
3,671,040 + MPMX20_03481 0.73 +0.1
3,671,052 + MPMX20_03481 0.75 -1.8
3,671,057 + MPMX20_03481 0.75 -0.6
3,671,057 + MPMX20_03481 0.75 -0.4
3,671,058 - MPMX20_03481 0.76 -1.9
3,671,113 + MPMX20_03481 0.82 +0.5
3,671,144 - MPMX20_03481 0.85 -1.5
3,671,202 - +0.1
3,671,286 + +0.7
3,671,299 + -0.0
3,671,304 + -0.6

Or see this region's nucleotide sequence